BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg474331
Length=954
Score E
Sequences producing significant alignments: (Bits) Value
AT1G52155.1 | Symbols: | unknown protein; Has 37 Blast hits to... 1375 0.0
> AT1G52155.1 | Symbols: | unknown protein; Has 37 Blast hits
to 37 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa
- 0; Fungi - 0; Plants - 35; Viruses - 0; Other Eukaryotes
- 2 (source: NCBI BLink). | chr1:19417666-19419853 FORWARD
LENGTH=1222
Length=1222
Score = 1375 bits (744), Expect = 0.0
Identities = 890/958 (93%), Gaps = 19/958 (2%)
Strand=Plus/Plus
Query 1 ATGTCTTTTGGTGTATATGTGACTGGTGTTCTGTTTCAGACAGCTTCATTTGTGTCTTTT 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 253 ATGTCTTTTGGTGTATATGTGACTGGTGTTCTGTTTCAGACAGCTTCATTTGTGTCTTTT 312
Query 61 TTACTCATCTCTCATGGTTATTGCATCACTTGTGAACGGCTCTCATTGACTGAACGCAGA 120
||||| |||||||| ||||||||||||||||||||||||||||| ||||| ||||| |||
Sbjct 313 TTACTTATCTCTCACGGTTATTGCATCACTTGTGAACGGCTCTCGTTGACCGAACGTAGA 372
Query 121 ACCACTGCTTCACTTGGTTGTGTTTTTTACTTGACGCTTGTTGGATACAGAGCTTCTGTT 180
|| || ||||||||||||||||| ||||| ||||| ||||||||||||||||||||||||
Sbjct 373 ACTACAGCTTCACTTGGTTGTGTCTTTTATTTGACTCTTGTTGGATACAGAGCTTCTGTT 432
Query 181 CCTTATTTTGCTGTGCTTCTGATACTTAACTACATGATCTCATTCTATGTTATATTCCAC 240
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 433 CCTTATTTTGCAGTGCTTCTGATACTTAACTACATGATCTCATTCTATGTTATATTCCAT 492
Query 241 CACATATCGCAAAACCTAGCGGTCTTACGAGAACAGCTAAGTTTTATCGAGGATGAGAAT 300
|||||||||||||| |||||||| |||||||||||||| ||||||||||| |||||||||
Sbjct 493 CACATATCGCAAAATCTAGCGGTGTTACGAGAACAGCTGAGTTTTATCGAAGATGAGAAT 552
Query 301 GTTCAAGCTATGCATGATGCTGTCTATGCTAAATATATTATGTTCAAAAAATTCCAAGGA 360
||||||||||||||||||||||| ||||||||||| || |||||||||||||||||||||
Sbjct 553 GTTCAAGCTATGCATGATGCTGTATATGCTAAATACATCATGTTCAAAAAATTCCAAGGA 612
Query 361 GCTATGCAGATTGTAGCAATGGCAGAAACTGTGATTTATATGAACATGGATAACTCCTCG 420
||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct 613 GCTATGCAGATTGTAGCAATGGCAGAAACTGTGATCTACATGAACATGGATAACTCCTCA 672
Query 421 CAGAACTATTGGCTCCGGCTACTAATTCGAGAATGGGCTCAGTTCTGCATTTTTCTCTAT 480
|| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 673 CAAAACTATTGGCTCAGGCTACTAATTCGAGAATGGGCTCAGTTCTGCATTTTTCTCTAT 732
Query 481 ATTGGTTGGACTTTCAGGTCTCAGGACATGGCACCGCGTTTCTCGGTAATGCCTACACTA 540
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 733 ATTGGTTGGACTTTCAGGTCTCAGGATATGGCACCGCGTTTCTCGGTAATGCCTACACTA 792
Query 541 AAACCTAAAGAGAATACAGTTATTCCTCCGATTTATAGCATGGACATGGACGCAAAATCT 600
||||| |||||||||||| ||||||||||||||||||||||||| |||||||||||||||
Sbjct 793 AAACCGAAAGAGAATACAATTATTCCTCCGATTTATAGCATGGAAATGGACGCAAAATCT 852
Query 601 TTCAAAGAATTCAGAAGTCAAGAATGGAACATCGGAGTGCCAATGCCATATTCAAACTAC 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 853 TTCAAAGAATTCAGAAGTCAAGAATGGAACATCGGAGTGCCAATGCCATATTCAAACTAC 912
Query 661 GAAAAGCAAAAAGATTCAGTTCTAGTGATAATTCAGCATCCGCGATAGCATTCAGAGAGA 720
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 913 GAAAAGCAAAAAGATTCAGTTCTAGTGATAATTCAGCATCCGCGATAGCATTTAGAGAGA 972
Query 721 CGCGGAAA-ATACAACGCTT-CCTCTTTCCATCTTCCTATTTAGAGTGAAAGATCACCAA 778
|| ||| |||||| | || ||||| |||||||||||| ||||||||||||||||||
Sbjct 973 AGCA-AAAGATACAATGTTTTCCTCTATCCATCTTCCTAAAGAGAGTGAAAGATCACCAA 1031
Query 779 AAACGACTAAGCGTCTCTCCGATTAAGACAAGATGCTTCCTCAGCAACTACTTTGTCCCT 838
|| ||| ||| |||||| ||||||||||||||||||||||||||||||| || || ||
Sbjct 1032 AATTGACAAAGTTTCTCTCTGATTAAGACAAGATGCTTCCTCAGCAACTACCTT-TCTCT 1090
Query 839 CTTTCC-TTTGG-TTTTGCGGGTTTCTTATCTTATAGAGGAATAAAAGTTGATTTTAATG 896
|||||| ||| ||||| |||||||||||||||||||||||||||| || | |
Sbjct 1091 CTTTCCATTTACATTTTG-GGGTTTCTTATCTTATAGAGGAATAAAA-TT--T------G 1140
Query 897 TATAGATGCAAAAATTAGTTCTAGTATAAATATGCTTCAAATGAAAATGTACACACAA 954
|||||||||||||| |||||||||||||| | |||||||||||||||||| ||||||
Sbjct 1141 TATAGATGCAAAAACTAGTTCTAGTATAA-T--GCTTCAAATGAAAATGTAAACACAA 1195
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46667522563
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5