BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg474340
Length=640
Score E
Sequences producing significant alignments: (Bits) Value
AT1G52230.1 | Symbols: PSAH2, PSAH-2, PSI-H | photosystem I sub... 922 0.0
AT3G16140.1 | Symbols: PSAH-1 | photosystem I subunit H-1 | chr... 532 1e-150
> AT1G52230.1 | Symbols: PSAH2, PSAH-2, PSI-H | photosystem I subunit
H2 | chr1:19454836-19455668 FORWARD LENGTH=664
Length=664
Score = 922 bits (499), Expect = 0.0
Identities = 583/620 (94%), Gaps = 19/620 (3%)
Strand=Plus/Plus
Query 1 ACAAATTACATCAATCCACTCACTTACTTTGG---C-AAC--A-AACAACAAAGAGAG-- 51
|||||||||||||||||||||||||||||||| | ||| | ||||||||||||||
Sbjct 1 ACAAATTACATCAATCCACTCACTTACTTTGGCAACAAACAAACAACAACAAAGAGAGAA 60
Query 52 A--AACATGGCGTCTTTTGCAACCATCGCCGCCGTACAACCTTCTGCCGCCGTGAAAGGA 109
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 ATTAACATGGCGTCTTTTGCAACCATCGCCGCCGTACAACCTTCTGCCGCCGTGAAAGGA 120
Query 110 CTCGGAGGTAGCTCTCTCGCCGGAGCTAAGCTCTTTATCAAGCCTTCTCGCCAAAGCTTC 169
|| |||||||||||||| ||||||||||||||||| ||||| ||||||||||||||||||
Sbjct 121 CTTGGAGGTAGCTCTCTTGCCGGAGCTAAGCTCTTCATCAAACCTTCTCGCCAAAGCTTC 180
Query 170 AAAACCAAATCCACCAGAGCTGGTGCTGTGGTGGCTAAGTATGGAGACAAAAGTGTCTAC 229
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 181 AAAACCAAATCCACCAGAGCTGGTGCTGTGGTGGCTAAGTATGGAGACAAAAGTGTATAC 240
Query 230 TTTGATTTAGAAGATTTGGGTAACACAACAGGACAATGGGATGTGTATGGATCTGATGCT 289
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 TTTGATTTAGAAGATTTGGGTAACACAACAGGACAATGGGATGTGTATGGATCTGATGCT 300
Query 290 CCTTCTCCTTATAACCCACTTCAGAGCAAGTTCTTTGAGACATTTGCTGCTCCTTTCACA 349
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 CCTTCTCCTTATAACCCACTTCAGAGCAAGTTCTTTGAGACATTTGCTGCTCCTTTCACA 360
Query 350 AAGAGAGGTTTGCTTCTCAAGTTTTTGATTCTTGGAGGAGGTTCTTTGCTTACTTATGTC 409
|||||||||||||||||||| |||||||||||||||||||| ||||||||||| |||||
Sbjct 361 AAGAGAGGTTTGCTTCTCAAATTTTTGATTCTTGGAGGAGGCTCTTTGCTTACATATGTT 420
Query 410 AGCGCGAACTCTACCGGCGATGTTCTTCCGATTAAGAGAGGTCCTCAAGAGCCACCTAAG 469
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 AGTGCGAACTCTACCGGCGATGTTCTTCCGATTAAGAGAGGTCCTCAAGAGCCACCTAAG 480
Query 470 CTCGGTCCTCGCGGCAAGCTTTAAATTAGCTTTCTAAA-TCTTTGAAAAAGTCTGGAAAC 528
|||||||||||||||||||||||||||||||||||||| ||||| |||||||| | ||||
Sbjct 481 CTCGGTCCTCGCGGCAAGCTTTAAATTAGCTTTCTAAAATCTTTCAAAAAGTCAG-AAAC 539
Query 529 TTTCTTCCCAATTCTGTGAACCCTTTTTAGTGATTTATGTATATTGTTGTGTTGTGTTAA 588
||||| ||||||||| |||||||| |||| || | ||| | || ||| || | |||||||
Sbjct 540 TTTCTCCCCAATTCTATGAACCCTATTTA-TG-TATAT-TGTACTGT-GT-T-GTGTTAA 593
Query 589 TTGCTTTGTAAGCTAGTGAT 608
||||||||||||||||||||
Sbjct 594 TTGCTTTGTAAGCTAGTGAT 613
> AT3G16140.1 | Symbols: PSAH-1 | photosystem I subunit H-1 | chr3:5468509-5469481
REVERSE LENGTH=665
Length=665
Score = 532 bits (288), Expect = 1e-150
Identities = 388/437 (89%), Gaps = 4/437 (1%)
Strand=Plus/Plus
Query 55 CATGGCGTCTTTTGCAACCATCGCCGCCGT-ACAACCTTCTGCCGCCGTGAAAGGACTCG 113
|||||||||| |||||||| ||||||| || | |||| || |||||| | ||||||||||
Sbjct 66 CATGGCGTCTCTTGCAACCGTCGCCGCTGTGA-AACCATCCGCCGCCATAAAAGGACTCG 124
Query 114 GAGGTAGCTCTCTCGCCGGAGCTAAGCTCTTTATCAAGCCTTCTCGCCAAAGCTTCAAAA 173
| || ||||| ||||||||||||||||||| ||||||||||| |||| ||||| |||
Sbjct 125 GCGGCAGCTCACTCGCCGGAGCTAAGCTCTCCATCAAGCCTTCCCGCCTGAGCTTTAAAC 184
Query 174 CCAAATCCA-CCAGAGCTGGTGCTGTGGTGGCTAAGTATGGAGACAAAAGTGTCTACTTT 232
||||||||| || | ||| || |||||||||||||||||||||||||||||||||||||
Sbjct 185 CCAAATCCATCC-GGGCTAATGGTGTGGTGGCTAAGTATGGAGACAAAAGTGTCTACTTT 243
Query 233 GATTTAGAAGATTTGGGTAACACAACAGGACAATGGGATGTGTATGGATCTGATGCTCCT 292
|| |||||||||||||||||||||||||| |||||||| || || || ||||||||||||
Sbjct 244 GACTTAGAAGATTTGGGTAACACAACAGGTCAATGGGACGTATACGGCTCTGATGCTCCT 303
Query 293 TCTCCTTATAACCCACTTCAGAGCAAGTTCTTTGAGACATTTGCTGCTCCTTTCACAAAG 352
|||||||| || || |||||||||||||||||||||||||| ||||| || |||||||||
Sbjct 304 TCTCCTTACAATCCTCTTCAGAGCAAGTTCTTTGAGACATTCGCTGCCCCATTCACAAAG 363
Query 353 AGAGGTTTGCTTCTCAAGTTTTTGATTCTTGGAGGAGGTTCTTTGCTTACTTATGTCAGC 412
||||| ||||| |||||||| ||||| ||||||||||| |||||||||||||||||||||
Sbjct 364 AGAGGATTGCTCCTCAAGTTCTTGATCCTTGGAGGAGGCTCTTTGCTTACTTATGTCAGC 423
Query 413 GCGAACTCTACCGGCGATGTTCTTCCGATTAAGAGAGGTCCTCAAGAGCCACCTAAGCTC 472
|| | |||||||||||| |||||||| || |||||||||||||| ||||| |||||||||
Sbjct 424 GCTACCTCTACCGGCGAAGTTCTTCCCATCAAGAGAGGTCCTCAGGAGCCGCCTAAGCTC 483
Query 473 GGTCCTCGCGGCAAGCT 489
|||||||||||||||||
Sbjct 484 GGTCCTCGCGGCAAGCT 500
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30894000405
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5