BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg474342
Length=671
Score E
Sequences producing significant alignments: (Bits) Value
AT1G52240.1 | Symbols: ATROPGEF11, ROPGEF11, PIRF1 | RHO guanyl... 527 6e-149
AT3G16120.1 | Symbols: | Dynein light chain type 1 family prot... 327 6e-89
> AT1G52240.1 | Symbols: ATROPGEF11, ROPGEF11, PIRF1 | RHO guanyl-nucleotide
exchange factor 11 | chr1:19455766-19459574 REVERSE
LENGTH=2046
Length=2046
Score = 527 bits (285), Expect = 6e-149
Identities = 377/417 (90%), Gaps = 23/417 (6%)
Strand=Plus/Plus
Query 13 AGAACAGTTGTGTTCGTTCGTGCCATTCTTTTGAATAG-TTATACTAATATTTATCATCT 71
|||||||||||||||||||||||||||||||||||| | |||||| || || |||
Sbjct 1 AGAACAGTTGTGTTCGTTCGTGCCATTCTTTTGAAT-GCTTATAC--GTA--CAT-TTCT 54
Query 72 TCTTGAAAAGACTTTGCATCCAAGAACCCGTGAGGAAGTAATTGAAATCTAAACTCAGTG 131
|||||||||||||||| ||||||||||||||||||||| | |||| | |||||
Sbjct 55 TCTTGAAAAGACTTTGAATCCAAGAACCCGTGAGGAAG----T--AATC----C-CAGTG 103
Query 132 AAGAGAAGACGACAAAGAAAAAGGAGTCTATAAAGATCCAAAGCTTTCCTTGTCCTTATT 191
|||||||||||||||||||||||||| ||||||||||||||||||| ||||||| ||| |
Sbjct 104 AAGAGAAGACGACAAAGAAAAAGGAGCCTATAAAGATCCAAAGCTTCCCTTGTCTTTAGT 163
Query 192 TCTCAGC-AGAAAACTGAAAAACGTTTTGAGTT-TT---TGAGAGAGAGATAGAGAAAGA 246
||||| | | |||| |||||||||||| ||||| || ||||||||||||||||||||
Sbjct 164 TCTCATCAAAAAAATTGAAAAACGTTTGGAGTTATTGAGAGAGAGAGAGATAGAGAAAGA 223
Query 247 TGTTGGAAGGCAAAGCAATGGTGGAAGATTCAGACATGCCAGTGAAGATGCAGATGCAAG 306
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 224 TGTTGGAAGGCAAAGCAATGGTGGAAGATTCAGACATGCCAGTGAAGATGCAGATGCAAG 283
Query 307 CTATGTCTTTTGCTTCTCAAGCTCTTGATCTTTTTGATGTCTTTGATTGTAAATCCATTG 366
||||| | |||||||||||||||||||| ||||||||||||||||| |||||||||||||
Sbjct 284 CTATGGCATTTGCTTCTCAAGCTCTTGACCTTTTTGATGTCTTTGACTGTAAATCCATTG 343
Query 367 CTGGTCACATCAAGAAGGAGTTTGATGAGAGATATGGGAGTGGATGGCAATGTGTGG 423
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 344 CTGGTCACATCAAGAAGGAGTTTGATGAGAGATATGGGAGTGGATGGCAATGTGTGG 400
> AT3G16120.1 | Symbols: | Dynein light chain type 1 family protein
| chr3:5464769-5465531 FORWARD LENGTH=684
Length=684
Score = 327 bits (177), Expect = 6e-89
Identities = 244/277 (88%), Gaps = 2/277 (1%)
Strand=Plus/Plus
Query 242 AAAGATGTTGGAAGGCAAAGC-AATGGTGGAAGATTCAGACATGCCAGTGAAGATGCAGA 300
||||||||||||||| ||||| || ||||||||| |||||||||| ||||||||||| |
Sbjct 263 AAAGATGTTGGAAGGGAAAGCGAA-GGTGGAAGAGACAGACATGCCTGTGAAGATGCAAA 321
Query 301 TGCAAGCTATGTCTTTTGCTTCTCAAGCTCTTGATCTTTTTGATGTCTTTGATTGTAAAT 360
||||||| ||| ||||||||||| |||| |||||||||||||||||||||| || ||
Sbjct 322 TGCAAGCAATGAAGATTGCTTCTCAATCTCTCGATCTTTTTGATGTCTTTGATTCTATAT 381
Query 361 CCATTGCTGGTCACATCAAGAAGGAGTTTGATGAGAGATATGGGAGTGGATGGCAATGTG 420
|||| |||| |||||||||||||||||| |||||||||||||| ||||||||||||||||
Sbjct 382 CCATCGCTGCTCACATCAAGAAGGAGTTCGATGAGAGATATGGAAGTGGATGGCAATGTG 441
Query 421 TGGTGGGATCAAATTTTGGGTGTTTCTTCACACATTCTAAAGGGACTTTTATCTATTTCC 480
| |||||| | |||||||||||||||||||||||||||||||| ||||| |||||||| |
Sbjct 442 TCGTGGGAACCAATTTTGGGTGTTTCTTCACACATTCTAAAGGAACTTTCATCTATTTTC 501
Query 481 AATTGGAGACACTTAAGTTTCTCATCTTTAAAGGCGC 517
| |||| ||| || || || |||||||| ||||||||
Sbjct 502 ATTTGGGGACTCTCAACTTCCTCATCTTCAAAGGCGC 538
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32451258962
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5