BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg474342 Length=671 Score E Sequences producing significant alignments: (Bits) Value AT1G52240.1 | Symbols: ATROPGEF11, ROPGEF11, PIRF1 | RHO guanyl... 527 6e-149 AT3G16120.1 | Symbols: | Dynein light chain type 1 family prot... 327 6e-89 > AT1G52240.1 | Symbols: ATROPGEF11, ROPGEF11, PIRF1 | RHO guanyl-nucleotide exchange factor 11 | chr1:19455766-19459574 REVERSE LENGTH=2046 Length=2046 Score = 527 bits (285), Expect = 6e-149 Identities = 377/417 (90%), Gaps = 23/417 (6%) Strand=Plus/Plus Query 13 AGAACAGTTGTGTTCGTTCGTGCCATTCTTTTGAATAG-TTATACTAATATTTATCATCT 71 |||||||||||||||||||||||||||||||||||| | |||||| || || ||| Sbjct 1 AGAACAGTTGTGTTCGTTCGTGCCATTCTTTTGAAT-GCTTATAC--GTA--CAT-TTCT 54 Query 72 TCTTGAAAAGACTTTGCATCCAAGAACCCGTGAGGAAGTAATTGAAATCTAAACTCAGTG 131 |||||||||||||||| ||||||||||||||||||||| | |||| | ||||| Sbjct 55 TCTTGAAAAGACTTTGAATCCAAGAACCCGTGAGGAAG----T--AATC----C-CAGTG 103 Query 132 AAGAGAAGACGACAAAGAAAAAGGAGTCTATAAAGATCCAAAGCTTTCCTTGTCCTTATT 191 |||||||||||||||||||||||||| ||||||||||||||||||| ||||||| ||| | Sbjct 104 AAGAGAAGACGACAAAGAAAAAGGAGCCTATAAAGATCCAAAGCTTCCCTTGTCTTTAGT 163 Query 192 TCTCAGC-AGAAAACTGAAAAACGTTTTGAGTT-TT---TGAGAGAGAGATAGAGAAAGA 246 ||||| | | |||| |||||||||||| ||||| || |||||||||||||||||||| Sbjct 164 TCTCATCAAAAAAATTGAAAAACGTTTGGAGTTATTGAGAGAGAGAGAGATAGAGAAAGA 223 Query 247 TGTTGGAAGGCAAAGCAATGGTGGAAGATTCAGACATGCCAGTGAAGATGCAGATGCAAG 306 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 224 TGTTGGAAGGCAAAGCAATGGTGGAAGATTCAGACATGCCAGTGAAGATGCAGATGCAAG 283 Query 307 CTATGTCTTTTGCTTCTCAAGCTCTTGATCTTTTTGATGTCTTTGATTGTAAATCCATTG 366 ||||| | |||||||||||||||||||| ||||||||||||||||| ||||||||||||| Sbjct 284 CTATGGCATTTGCTTCTCAAGCTCTTGACCTTTTTGATGTCTTTGACTGTAAATCCATTG 343 Query 367 CTGGTCACATCAAGAAGGAGTTTGATGAGAGATATGGGAGTGGATGGCAATGTGTGG 423 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 344 CTGGTCACATCAAGAAGGAGTTTGATGAGAGATATGGGAGTGGATGGCAATGTGTGG 400 > AT3G16120.1 | Symbols: | Dynein light chain type 1 family protein | chr3:5464769-5465531 FORWARD LENGTH=684 Length=684 Score = 327 bits (177), Expect = 6e-89 Identities = 244/277 (88%), Gaps = 2/277 (1%) Strand=Plus/Plus Query 242 AAAGATGTTGGAAGGCAAAGC-AATGGTGGAAGATTCAGACATGCCAGTGAAGATGCAGA 300 ||||||||||||||| ||||| || ||||||||| |||||||||| ||||||||||| | Sbjct 263 AAAGATGTTGGAAGGGAAAGCGAA-GGTGGAAGAGACAGACATGCCTGTGAAGATGCAAA 321 Query 301 TGCAAGCTATGTCTTTTGCTTCTCAAGCTCTTGATCTTTTTGATGTCTTTGATTGTAAAT 360 ||||||| ||| ||||||||||| |||| |||||||||||||||||||||| || || Sbjct 322 TGCAAGCAATGAAGATTGCTTCTCAATCTCTCGATCTTTTTGATGTCTTTGATTCTATAT 381 Query 361 CCATTGCTGGTCACATCAAGAAGGAGTTTGATGAGAGATATGGGAGTGGATGGCAATGTG 420 |||| |||| |||||||||||||||||| |||||||||||||| |||||||||||||||| Sbjct 382 CCATCGCTGCTCACATCAAGAAGGAGTTCGATGAGAGATATGGAAGTGGATGGCAATGTG 441 Query 421 TGGTGGGATCAAATTTTGGGTGTTTCTTCACACATTCTAAAGGGACTTTTATCTATTTCC 480 | |||||| | |||||||||||||||||||||||||||||||| ||||| |||||||| | Sbjct 442 TCGTGGGAACCAATTTTGGGTGTTTCTTCACACATTCTAAAGGAACTTTCATCTATTTTC 501 Query 481 AATTGGAGACACTTAAGTTTCTCATCTTTAAAGGCGC 517 | |||| ||| || || || |||||||| |||||||| Sbjct 502 ATTTGGGGACTCTCAACTTCCTCATCTTCAAAGGCGC 538 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 32451258962 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5