BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg474344
Length=796
Score E
Sequences producing significant alignments: (Bits) Value
AT1G52280.1 | Symbols: AtRABG3d, RABG3d | RAB GTPase homolog G3... 1240 0.0
AT1G49300.1 | Symbols: ATRAB7, ATRABG3E, RABG3E | RAB GTPase ho... 351 4e-96
> AT1G52280.1 | Symbols: AtRABG3d, RABG3d | RAB GTPase homolog
G3D | chr1:19467969-19469586 REVERSE LENGTH=939
Length=939
Score = 1240 bits (671), Expect = 0.0
Identities = 721/745 (97%), Gaps = 4/745 (1%)
Strand=Plus/Plus
Query 19 gaaag-agaaaaacagagacagtttcttcgctgaaaagaaaaaccaaaaT-AGCTAAATC 76
||||| || |||||||||||||||||||||||||||||||||||| |||| |||||||||
Sbjct 63 GAAAGAAG-AAAACAGAGACAGTTTCTTCGCTGAAAAGAAAAACC-AAATCAGCTAAATC 120
Query 77 CCTAAAAGTTTCCGTCAATGTCTTCTCGCCGGAGAGTTCTTCTCAAGGTTATCATTCTCG 136
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 CCTAAAAGTTTCCGTCAATGTCTTCTCGCCGGAGAGTTCTTCTCAAGGTTATCATTCTCG 180
Query 137 GTGATAGCGGGGTTGGGAAGACTTCGTTGATGAATCAGTTTGTGAATCGAAAGTTTAGTA 196
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 GTGATAGCGGTGTTGGGAAGACTTCGTTGATGAATCAGTTTGTGAATCGAAAGTTTAGTA 240
Query 197 ATCAGTATAAAGCGACGATTGGAGCAGATTTTTTGACTAAAGAGGTTCAAATTGATGACA 256
||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 241 ATCAGTATAAAGCTACGATTGGAGCAGATTTTTTGACTAAAGAGGTTCAAATAGATGACA 300
Query 257 GAATCTTCACTTTACAGATTTGGGATACTGCTGGGCAAGAAAGATTTCAAAGTTTGGGAG 316
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 301 GAATCTTCACTTTACAGATTTGGGATACTGCTGGACAAGAAAGATTTCAAAGTTTGGGAG 360
Query 317 TCGCGTTTTACCGAGGAGCGGATTGTTGTGTTCTTGTGTATGATGTCAATGTTATGAAAT 376
| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 361 TTGCGTTTTACCGAGGAGCGGATTGTTGTGTTCTTGTCTATGATGTCAATGTTATGAAAT 420
Query 377 CTTTTGATAATCTTAATAACTGGAGGGAAGAGTTCTTGATTCAGGCTAGTCCATCGGATC 436
|||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct 421 CTTTTGATAATCTTAATAACTGGAGGGAAGAGTTCTTGATTCAGGCTAGTCCTTCAGATC 480
Query 437 CTGAAAACTTTCCGTTTGTCGTGTTGGGGAACAAAACCGATGTTGACGGTGGCAAGAGCC 496
||||||||||||| ||||| |||||||||||||| || |||||||| ||||| ||||||
Sbjct 481 CTGAAAACTTTCCATTTGTTGTGTTGGGGAACAAGACTGATGTTGATGGTGGAAAGAGCA 540
Query 497 GAGTGGTTTCTGAGAAAAAGGCAAAGGCATGGTGTGCATCTAAAGGAAACATTCCTTACT 556
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 GAGTGGTTTCTGAGAAAAAGGCAAAGGCATGGTGTGCATCTAAAGGAAACATTCCTTACT 600
Query 557 TTGAGACTTCCGCCAAAGAAGGATTCAATGTAGATGCGGCTTTCGAATGCATAACCAAAA 616
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 601 TTGAGACTTCCGCCAAAGAAGGATTCAATGTAGATGCGGCTTTCGAATGCATTACCAAAA 660
Query 617 ATGCATTCAAGAATGAACCTGAAGAGGAACCGTACCTTCCCGACACCATTGATGTTGCCG 676
|||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 661 ATGCTTTCAAGAATGAACCTGAAGAAGAACCGTACCTTCCCGACACCATTGATGTTGCCG 720
Query 677 GAGGTCAGCAACAAAGATCAACAGGGTGTGAATGCTAATCAAGCAAAACTTTGTTGCAGA 736
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 721 GAGGTCAGCAACAAAGATCAACAGGGTGTGAATGCTAATCAAGCAAAAGTTTGTTGCAGA 780
Query 737 TATATTGTTTTGTTTGGCACATTTT 761
|| ||||||||||||||||||||||
Sbjct 781 TACATTGTTTTGTTTGGCACATTTT 805
Score = 65.8 bits (35), Expect = 6e-10
Identities = 37/38 (97%), Gaps = 0/38 (0%)
Strand=Plus/Plus
Query 759 TTTTGAATTACAGATTGTAATGAATTGGGTTCCTTTTT 796
|||||| |||||||||||||||||||||||||||||||
Sbjct 856 TTTTGAGTTACAGATTGTAATGAATTGGGTTCCTTTTT 893
> AT1G49300.1 | Symbols: ATRAB7, ATRABG3E, RABG3E | RAB GTPase
homolog G3E | chr1:18234724-18237231 FORWARD LENGTH=1002
Length=1002
Score = 351 bits (190), Expect = 4e-96
Identities = 490/633 (77%), Gaps = 28/633 (4%)
Strand=Plus/Plus
Query 94 ATGTCTTCTCGCCGGAGAGTTCTTCTCAAGGTTATCATTCTCGGTGATAGCGGGGTTGGG 153
||| ||||||| | ||| ||| ||||| || ||||| |||||||||||||||||||||
Sbjct 119 ATGCCTTCTCGTAGAAGAACTCTCCTCAAAGTCATCATCCTCGGTGATAGCGGGGTTGGG 178
Query 154 AAGACTTCGTTGATGAATCAGTTTGTGAATCGA-AAGTTTAGTAATCAGTATAAAGCGAC 212
|||||||| || |||||||| | ||| ||| | ||||| || || |||||||| || ||
Sbjct 179 AAGACTTCTTTAATGAATCAATATGTTAAT-AAGAAGTTCAGCAACCAGTATAAGGCAAC 237
Query 213 GATTGGAGCAGATTTTTTGACTAAAGAGGTTCAAATTGATGACAGAATCTTCACTTTACA 272
||||| || ||||| |||||||| || |||||| |||| ||| | | |||||||||||
Sbjct 238 TATTGGGGCTGATTTCTTGACTAAGGAAGTTCAATTTGAAGACCGGCTTTTCACTTTACA 297
Query 273 GATTTGGGATACTGCTGGGCAAGAAAGATTTCAAAGT-TTGGGAGTCGCGTTTTACCGAG 331
||| ||||| || ||||| |||||||| ||||| ||| || || || |||||||| || |
Sbjct 298 GATCTGGGACACAGCTGGTCAAGAAAGGTTTCAGAGTCTT-GGTGTTGCGTTTTATCGTG 356
Query 332 GAGCGGATTGTTGTGTTCTTGTGTATGATGTCAATGTTATG--AAATCTTTTGATAATCT 389
| || ||||| ||||||||||| ||||||||||| | | ||||| || || ||||
Sbjct 357 GTGCTGATTGCTGTGTTCTTGTATATGATGTCAA--CTCCGCAAAATCATTCGAGGATCT 414
Query 390 TAATAACTGGAGGGAAGAGTT-CTTGATTCAGGCTAGTCCATCGGATCCTGAAAACTTTC 448
|| ||||||||||||||||| || ||| ||||| ||||| |||||||| || |||||||
Sbjct 415 CAACAACTGGAGGGAAGAGTTTCT-GATCCAGGCAAGTCCTTCGGATCCAGAGAACTTTC 473
Query 449 CGTTTGTCGTGT-TGGGGAACAAAACCGATGTTGACGGTGGCAAG-AGCCGAGTGGTTTC 506
| ||||| || | | || || || | |||||| || ||||| ||| ||||| ||||| ||
Sbjct 474 CCTTTGTTGT-TATCGGTAATAAGATCGATGTGGATGGTGG-AAGCAGCCGGGTGGTATC 531
Query 507 TGAGAAAAAGGCAA-AGGCATGGTGTGCATCTAAAGGAAACATTCCTTACTTTGAGACTT 565
||||| ||||| || | |||||||| || |||||||||||||| |||| ||| || |
Sbjct 532 AGAGAAGAAGGCTCGAG-CTTGGTGTGCTTCGAAAGGAAACATTCCATACTATGAAACCT 590
Query 566 CCGCCAAAGAAGG-ATTCAATGTAGATG-CGGCTTTCGAATGCATAACCAAAAATGCATT 623
| || |||| ||| | ||||||||| | || | ||| |||||||| | || ||| |
Sbjct 591 CAGCTAAAGTAGGCAC-CAATGTAGAAGACG-CGTTCCTGTGCATAACTACGAACGCAAT 648
Query 624 CAAGAATGAACCTGAAGAGGAACCGTACCTTCCCGACACCATTGATGTTGCCGGAGGTCA 683
|||| || | || || ||| |||||| || ||||| || ||||| | ||| ||
Sbjct 649 GAAGAGTGGAGAAGAGGAAGAAATGTACCTACCAGACACGATCGATGT--C-GGAAC-CA 704
Query 684 GCAA-CAA-AGA--TCAACAGGGTGTGAATGCT 712
|||| | | ||| |||||||| ||||||||||
Sbjct 705 GCAATCCACAGAGGTCAACAGGATGTGAATGCT 737
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38730527337
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5