BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg474345
Length=1791
Score E
Sequences producing significant alignments: (Bits) Value
AT1G52290.1 | Symbols: | Protein kinase superfamily protein | ... 1949 0.0
AT1G23540.1 | Symbols: IGI1, AtPERK12 | Protein kinase superfam... 171 3e-41
> AT1G52290.1 | Symbols: | Protein kinase superfamily protein
| chr1:19470033-19472449 REVERSE LENGTH=1835
Length=1835
Score = 1949 bits (1055), Expect = 0.0
Identities = 1274/1374 (93%), Gaps = 38/1374 (3%)
Strand=Plus/Plus
Query 449 ATAATCTTCAGCAATGGGGTTCATCAGAGATTGGACACAACTTGTTTACATATGAAGATT 508
||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||
Sbjct 434 ATAATCTTCAGCAATGGAGTTCATCAGAGATTGGACAAAACTTGTTTACATATGAAGATT 493
Query 509 TGTCTAAAGCAACTAGTAACTTCTCCAACACTAACCTTATTGGACAAGGTGGGTTTGGTT 568
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 494 TGTCTAAAGCAACTAGTAACTTCTCCAACACTAACCTTCTTGGACAAGGTGGGTTTGGTT 553
Query 569 ATGTTCATAGAGGAGTTCTTGTTGATGGAACTTTGGTTGCTATTAAGCAGCTTAAAGCTG 628
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 554 ATGTTCATAGAGGAGTTCTTGTTGATGGAACTTTGGTTGCTATTAAGCAGCTTAAATCTG 613
Query 629 GAAGTGGACAAGGTGAACGAGAGTTTCAAGCTGAGATACAAACTATTAGTAGAGTTCATC 688
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 614 GAAGTGGACAAGGTGAACGAGAGTTTCAAGCTGAGATACAGACTATTAGTAGAGTTCATC 673
Query 689 ATAGGCATCTTGTTTCTCTTCTTGGTTATTGTATCACTGGAGCTCAAAGATTACTTGTTT 748
|||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||
Sbjct 674 ATAGGCATCTTGTTTCTCTTCTTGGTTATTGTATCACTGGTGCTCAAAGATTGCTTGTTT 733
Query 749 ATGAGTTTGTGCCTAATAAGACTCTAGAGTTTCATTTGCACGAGAAAGGGAGACCGGTAA 808
||||||||||||||||||||||||| || |||||||| |||||||||| |||||||||||
Sbjct 734 ATGAGTTTGTGCCTAATAAGACTCTCGAATTTCATTTACACGAGAAAGAGAGACCGGTAA 793
Query 809 TGGAGTGGTCCAAGAGGATGAAGATTGCTTTGGGTGCAGCTAAAGGATTGGCATACTTAC 868
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 794 TGGAGTGGTCAAAGAGGATGAAGATTGCTTTGGGTGCAGCTAAAGGATTGGCATACTTAC 853
Query 869 ATGAAGATTGTAATCCTAAGACAATACACCGCGATGTCAAGGCTGCAAATATTCTGATCG 928
||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct 854 ATGAAGATTGTAATCCTAAGACAATACACCGCGATGTCAAGGCTGCAAATATTCTAATTG 913
Query 929 ATGATAGCTTTGAGGCGAAGCTAGCAGATTTTGGACTCGCCAGGTCTTCTTTGGACACTG 988
| ||||||| |||||||||| |||||||||||||||| |||||||||||||| |||||||
Sbjct 914 ACGATAGCTATGAGGCGAAGTTAGCAGATTTTGGACTTGCCAGGTCTTCTTTAGACACTG 973
Query 989 ATACTCATGTTTCCACTCGGATAATGGGAACATTCGGTTACTTGGCTCCTGAATATGCTT 1048
|||||||||| ||||||||||| |||||||| ||||||||||||||||||||||||||||
Sbjct 974 ATACTCATGTCTCCACTCGGATTATGGGAACCTTCGGTTACTTGGCTCCTGAATATGCTT 1033
Query 1049 CTTCTGGGAAACTCACTGATAAATCAGATGTCTTCTCATTTGGAGTGGTGCTTCTTGAAT 1108
|||| |||||||| ||||| |||||||||||||||||| ||||||||||||||||||||
Sbjct 1034 CTTCAGGGAAACTTACTGAGAAATCAGATGTCTTCTCAATTGGAGTGGTGCTTCTTGAAC 1093
Query 1109 TGATAACCGGACGCCGTCCTGTTGATAAATCACAGCCTTTTGCTGATGATGATAGCATCG 1168
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1094 TGATAACCGGACGCCGTCCTGTTGATAAATCACAGCCTTTTGCTGATGATGATAGCATCG 1153
Query 1169 TTGATTGGGCGAAACCTCTGATGATACAAGT-TCTAAACGATGGCAACTTTGATGGTCTT 1227
|||||||||| ||||||||||||||||||| | |||||||||| |||||||| ||||||
Sbjct 1154 TTGATTGGGCAAAACCTCTGATGATACAAGCGT-TAAACGATGGAAACTTTGACGGTCTT 1212
Query 1228 GTTGACCCGCGGTTAGAGAATGACTTTGATATCAACGAAATGACGAGAATGGTTGCTTGC 1287
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1213 GTTGACCCGCGGTTAGAGAATGATTTTGATATCAACGAAATGACGAGAATGGTTGCTTGC 1272
Query 1288 GCTGCTGCTAGTGTCCGTCATTCAGCCAAACGCCGCCCAAAAATGAGCCAGATAGTTCGA 1347
|||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct 1273 GCTGCTGCTAGTGTCCGTCATTCAGCTAAACGTCGCCCAAAAATGAGCCAGATAGTTCGA 1332
Query 1348 GCATTCGAAGGAAACATATCTATAGATGACCTAACAGAAGGAGCTGCTCCAGGACACAGC 1407
|||||||||||||| |||||||||||||||||||||||||||||||| |||||||| ||
Sbjct 1333 GCATTCGAAGGAAATATATCTATAGATGACCTAACAGAAGGAGCTGCCCCAGGACAAAGT 1392
Query 1408 ACTATCTACAGCTTAGACGGGAGCTCAGATTATAGCTCGACACAATACAAAGAAGACTTG 1467
||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1393 ACTATTTACAGCTTAGACGGGAGCTCAGATTATAGCTCAACACAATACAAAGAAGACTTG 1452
Query 1468 AAGAAATTCAAGAAAATGGCACTT-GAAAGCCAGACATTTGGTAGCAGCGAGTGTAGCGG 1526
|||||||||||||||||||| || |||||| | ||||||||||||||||| || || ||
Sbjct 1453 AAGAAATTCAAGAAAATGGCG-TTCGAAAGCAAAACATTTGGTAGCAGCGAATGCAGTGG 1511
Query 1527 TTTGACTAGCGACAACGGTCAGAACCCATCAGTCTCGTCTAGCATCACTGAAGGCCAACG 1586
||||||||||||||| |||||||||||||||| ||||||||| ||||| |||||||||||
Sbjct 1512 TTTGACTAGCGACAATGGTCAGAACCCATCAGGCTCGTCTAGTATCACCGAAGGCCAACG 1571
Query 1587 TACAACGCAAGAGATCGAACCGGAGATGAAAACCAAGGAGACAAT-AACTTAAAAACAGA 1645
||||||||| |||||||||||||||| ||| |||||||| ||| | ||||| ||| ||||
Sbjct 1572 TACAACGCAGGAGATCGAACCGGAGAAGAATACCAAGGACACA-TGAACTTTAAA-CAGA 1629
Query 1646 GGATTCTTGGTAATA-------C--AT--TTT-GGGGTAGG-----T---TT-AGGTGTA 1684
||||||||||||||| | || ||| |||||||| | || |||||||
Sbjct 1630 GGATTCTTGGTAATAGTTAAGTCTTATCATTTTGGGGTAGGACCCGTAGGTTTAGGTGTA 1689
Query 1685 AACAAACAC-ATT-ATTA--CGCGCCTTCACTTTTA-TT-TTCTC-ATGTGTGGCTCTAA 1737
|| | ||| ||| |||| ||||| |||||||||| || || || ||||||||||||||
Sbjct 1690 AA-ACACATTATTCATTAGACGCGCTTTCACTTTTAATTATT-TCCATGTGTGGCTCTAA 1747
Query 1738 TCAAAACTGTCATGAGCCTGATTTTTGCACGTGAATATTATTTCTTAGAGATTT 1791
|| ||||||||||||||||||| || ||||||||||||||||| || |||||||
Sbjct 1748 TCGAAACTGTCATGAGCCTGATATT-GCACGTGAATATTATTTGTTGGAGATTT 1800
Score = 427 bits (231), Expect = 2e-118
Identities = 309/345 (90%), Gaps = 11/345 (3%)
Strand=Plus/Plus
Query 32 GAAAAACCAAATCA---TCATCATTTTCCGATCTAATGTC-ATCGTCTCCGT-TCCCTTC 86
|||||||||||||| ||||||| ||| ||||||||||| | || | | | |||||||
Sbjct 53 GAAAAACCAAATCATCCTCATCATCTTCTGATCTAATGTCTACCGAC-AC-TATCCCTTC 110
Query 87 ATTCTCATCTCCACCGGCGCCGGAGTTTCTTTCCACCACACAAAACACGGCAACGTCGCC 146
||||||||||||||||||||||||||| ||||||||||| | ||||||| ||||| ||
Sbjct 111 CCTCTCATCTCCACCGGCGCCGGAGTTTCCTTCCACCACACCAGACACGGCGACGTCACC 170
Query 147 AGCTCCGTCTCAGCCATCCATCAACGGACCTTCTTGGCTGTCTCCGTTCCCGGAGACGAC 206
||||||||||||||||||||||| ||||||||||| | || ||||||| |||||||| ||
Sbjct 171 AGCTCCGTCTCAGCCATCCATCATCGGACCTTCTTCGTTGGCTCCGTTTCCGGAGACAAC 230
Query 207 AACAAACATTGATGGAGGCTCGCGAAATGTAGCATTAACTGGACTTATTACTGGAGTAGT 266
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 231 AACAAACATTGATGGAGGCTCGAGAAATGTAGCATTAACTGGACTTATTACTGGAGTAGT 290
Query 267 TCTCGGAGCTACGATTGTTCTTA-TCGGAGTTTGTATCTTTGTCTGTTTCTATaaaagaa 325
||||||||||||| |||| || | ||||||||||||||||||||||||||||||||||||
Sbjct 291 TCTCGGAGCTACGTTTGTCCT-ACTCGGAGTTTGTATCTTTGTCTGTTTCTATAAAAGAA 349
Query 326 agcagaggaagttgaagatgaagaagaa-gaaagatattgaagCT 369
|| |||||||||| |||| ||||||||| ||| ||||| ||||||
Sbjct 350 AGAAGAGGAAGTTAAAGAAGAAGAAGAAAGAA-GATATCGAAGCT 393
Score = 67.6 bits (36), Expect = 4e-10
Identities = 38/39 (97%), Gaps = 0/39 (0%)
Strand=Plus/Plus
Query 1 GTCTTCATCTTCGTCTTCACTTCCGCCATGAGAAAAACC 39
|||||| ||||||||||||||||||||||||||||||||
Sbjct 1 GTCTTCGTCTTCGTCTTCACTTCCGCCATGAGAAAAACC 39
> AT1G23540.1 | Symbols: IGI1, AtPERK12 | Protein kinase superfamily
protein | chr1:8346827-8349786 REVERSE LENGTH=2278
Length=2278
Score = 171 bits (92), Expect = 3e-41
Identities = 393/535 (73%), Gaps = 34/535 (6%)
Strand=Plus/Plus
Query 604 GTTGCTATTAAGCAGCTTAAAGCTGGAAGTGGACAAGGTGAACGAGAGTTTCAA-GCTGA 662
||||| |||||||||||||||||||||||||||||||||| || || || ||| || ||
Sbjct 1186 GTTGCGGTTAAGCAGCTTAAAGCTGGAAGTGGACAAGGTGACCGTGAATT-CAAAGCAGA 1244
Query 663 GATACAAA-CTATTAGTAGAGTTCATCATAGGCATCTTGTT-TCTCTTCTTGGTTATTGT 720
| | | | | || || | ||||||||| | ||| ||| | ||||| ||||||| ||
Sbjct 1245 GGTTGAGATC-ATCAGCCGCGTTCATCATCGCCAT-TTGGTCTCTCTGGTTGGTTACTGC 1302
Query 721 ATCACTGGAGCT-CAAAGATTACTTGTTTATGAGTTTGTGCCTAAT-AAGACTCTAG-AG 777
|| | | | | || ||||| ||| | ||||||| ||| ||||| || || || | ||
Sbjct 1303 ATTTCAG-ACCAGCATAGATTGCTTATCTATGAGTATGTTTCTAATCAA-AC-CTTGGAG 1359
Query 778 TTTCATTTGCACGAGAAAGGGA--GACCGGTAATGGAGTGGTCCAAGAG-GATGAAGATT 834
||||||||| | ||||||| | || || | |||||||| ||||| | | |||
Sbjct 1360 CATCATTTGCATG-GAAAGGGTTTG-CCAGTTTTAGAGTGGTCTAAGAGAG-TCCGGATC 1416
Query 835 GCTTTGGG-TGCAGCTAAAGGATTGGCATA-CTTACATGAAGATTGTAATCCTAAGA-CA 891
||| | || | |||| ||||| |||||||| ||| || ||||| ||| |||| || | ||
Sbjct 1417 GCTATAGGAT-CAGCCAAAGGGTTGGCATATCTT-CACGAAGACTGTCATCCGAAAATCA 1474
Query 892 ATACACCGCGATGTCAAGGCTGCAAATATTCTGATCGATGATAGCTT-TGAGGCGAAGCT 950
| ||| | ||| | ||| | ||||||||||| | |||||| | | ||| || || |
Sbjct 1475 TT-CACAGAGATATAAAGTCAGCAAATATTCTTCTAGATGAT-GAATATGAAGCTCAGGT 1532
Query 951 AGCAGATTTTGGACTCGCCAGGTCTTCTTTGG-ACA-CTGATACTCATGTTTCCACTCGG 1008
|| ||||||||||| || || || | || ||| | | ||||||||||| ||||||
Sbjct 1533 TGCTGATTTTGGACTTGCTAGA-CT-CAATGATACAACACAAACTCATGTTTCAACTCGG 1590
Query 1009 ATAATGGGAACATTCGGTTACTTGGCTCCTGAATATGCTTCTTCTGGGAAACTCACTGAT 1068
| |||||||| ||||| ||| | || || |||||||| || ||| ||| | ||||||
Sbjct 1591 GTTATGGGAACCTTCGGGTACCTAGCGCCGGAATATGCATCAAGTGGAAAATTGACTGAT 1650
Query 1069 AAATCAGATGTCTTCTCATTTGGAGTGGTGCTTCTT-GAA-TTGATAACCGGACG 1121
| ||| ||||| |||||||| || || || || ||| || ||| |||| |||||
Sbjct 1651 AGATCCGATGTATTCTCATTCGGGGTTGTTCT-CTTAGAGCTTG-TAACTGGACG 1703
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 88603961925
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5