BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg474346
Length=1910
Score E
Sequences producing significant alignments: (Bits) Value
AT1G52310.1 | Symbols: | protein kinase family protein / C-typ... 2758 0.0
> AT1G52310.1 | Symbols: | protein kinase family protein / C-type
lectin domain-containing protein | chr1:19478124-19480610
FORWARD LENGTH=1978
Length=1978
Score = 2758 bits (1493), Expect = 0.0
Identities = 1749/1874 (93%), Gaps = 12/1874 (1%)
Strand=Plus/Plus
Query 40 AGCATAAAGTCTGCGTCTTTCTTTCAGATGTTATGACTTAA-CGGGT-TTTATGTAGCTG 97
||| ||||||||| ||||||||| | ||||||||||||||| | ||| |||||| |||||
Sbjct 108 AGCGTAAAGTCTGAGTCTTTCTTCCCGATGTTATGACTTAATC-GGTGTTTATGAAGCTG 166
Query 98 TAGCTATGGAGCTGAAGTGTGTTTTTTGTCAGAAACGATCTCTGTTCTTGATTTCTTGTC 157
||| ||||||||||||||| |||| ||||| ||||| ||||||||||||||| |||||||
Sbjct 167 TAGTTATGGAGCTGAAGTGGGTTTCTTGTCGGAAACAATCTCTGTTCTTGATCTCTTGTC 226
Query 158 TGACTTTGCTTTGTCTCGCATCCTTGGATACTATATCAAGTGAATCAACTCAAAATGCAA 217
|| || ||||||||||||| |||||||||||||||||| ||||||||||||| ||||| |
Sbjct 227 TGGCTCTGCTTTGTCTCGCGTCCTTGGATACTATATCATGTGAATCAACTCAGAATGCTA 286
Query 218 CTAATTTCAAGAAAAGCTCTCACAGAGTTTCTTGCCCTTCTGATTGGATCATTGGATTGA 277
|| | ||||||||| | ||||| | ||||||||||||| ||||||||||||||||| ||
Sbjct 287 CTGACTTCAAGAAACGATCTCAGACAGTTTCTTGCCCTCCTGATTGGATCATTGGACCGA 346
Query 278 ACCAAACGAAATGCTATGGTTACTTTAGAAACTCCACTACATGGGAGAAGTCAGAAATGT 337
||||||| || ||||||| |||||||| |||||| ||| |||||||||||||||||||||
Sbjct 347 ACCAAACCAAGTGCTATGCTTACTTTAAAAACTCTACTTCATGGGAGAAGTCAGAAATGT 406
Query 338 TCTGTAGAACTTATGGCGGTCACTTAGCATCGGTTGCATCGAGCAAAGAACTCAGCTTTG 397
|||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||
Sbjct 407 TCTGTAGAACTTATGGTGGTCACTTAGCATCGCTTGCATCGAGCAAAGAACTCAGCTTTG 466
Query 398 TTCAGAAACTTTGCATTGGAAATGTTAGTGGTTGTTGGATTGGAGGAAGAAGTCTGAATT 457
|||| ||||| |||| |||||||||||| ||||||||||||||||| ||||| ||||||
Sbjct 467 TTCAAAAACTATGCAATGGAAATGTTAGCAGTTGTTGGATTGGAGGACGAAGTATGAATT 526
Query 458 CTTCTACCTCCGGTTTCCGTTGGAGCTGGTCTGATCCTAAGACGCCTCAATGGAACCAAT 517
|||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 527 CTTCTACCTCAGGTTTCCGTTGGAGCTGGTCTGATCCTAAGACTCCTCAATGGAACCAAT 586
Query 518 CCTTGTTTCCTAAAGTGCC-ATTACGCACCCGCTGTGGCAATGGCAATGGCAGTTCATCT 576
|| ||||||||||||| || ||| ||||||||||||||||||||||| |||||||||||
Sbjct 587 CCATGTTTCCTAAAGTTCCAATT-CGCACCCGCTGTGGCAATGGCAACGGCAGTTCATCG 645
Query 577 TGTCGTGCTAATATCTGTATGGCCGTGACAAACGGTTCATCACCAATCTTTGGTGAAAGA 636
|||||||||||||| ||||| ||||||||||| ||||||||| |||| || |||||||||
Sbjct 646 TGTCGTGCTAATATATGTATAGCCGTGACAAATGGTTCATCATCAATATTCGGTGAAAGA 705
Query 637 TGTAACGCGTCTCATGCTTTCGTTTGCGCTGTTGATTCTGATATCAAATGTCGCAATTGT 696
||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 706 TGTAATGCGTCTCATGCTTTTGTTTGCGCTGTTGATTCTGATATCAAATGTCGCAATTGT 765
Query 697 CACAAATATCTAATTATCCTCGCCGTTGTCAGCGGTTTGATTCTCTTCACCACATTTGCC 756
|||||||||||| |||||||||| |||||||||||||||||||||||||| ||||| |||
Sbjct 766 CACAAATATCTAGTTATCCTCGCTGTTGTCAGCGGTTTGATTCTCTTCACGACATTCGCC 825
Query 757 ATTATATTATGGCTCCTTGTCTACAAACGAAGCAAGAAACGCCGAAAATCACGAAAAGTA 816
||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct 826 ATTATATTATGGCTCCTTGTCTATAAGCGAAGCAAGAAACGCCGAAAATCACGAAAAGTA 885
Query 817 TCAAATCCAGCTTCTTCATCATCAGTAGTTCCTCCATCATGGAAGATCTTCACTAGTGAA 876
|| ||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 886 TCTAATCCAGCTTCATCATCATCAGTAGTTCCTCCTTCATGGAAGATCTTCACTAGTGAA 945
Query 877 GAACTGAGATCAATGACGAAGAACTTCAGTGAAGCAAACCGTCTGGCCGGGGATGCAAAA 936
|||||||||||||||||||||||||||||||||||||||||||| || ||||| || |||
Sbjct 946 GAACTGAGATCAATGACGAAGAACTTCAGTGAAGCAAACCGTCTAGCTGGGGACGCGAAA 1005
Query 937 ACCGGTGGAACCTATAGCGGTGGTTTATCAGACGGGACTAAAGTGGCGGTTAAAAGATTA 996
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1006 ACCGGTGGAACCTATAGCGGTGGTTTATCAGACGGGACTAAAGTGGCGGTTAAGAGATTG 1065
Query 997 AAAAGGTCTAGTTTTCAGAGGAAGAAAGAATTCTACTCCGAGATTAGAAGAGCAGCTAAA 1056
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1066 AAAAGGTCTAGTTTTCAGAGGAAGAAAGAGTTCTACTCCGAGATTAGAAGAGCAGCTAAA 1125
Query 1057 CTTCATCACCCGAATGTAGTGGCCATCAAAGGTTGTTGCTATGATCACGGAGAACGTTTC 1116
||| |||||||||||||||| || || |||||||||||||||||||| ||||||||||||
Sbjct 1126 CTTTATCACCCGAATGTAGTTGCTATAAAAGGTTGTTGCTATGATCATGGAGAACGTTTC 1185
Query 1117 ATTGTTTATGAGTTCATAGCTAGTGGACCTCTCGATAGATGGCTACACCATGTGCCTAGA 1176
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1186 ATTGTTTATGAGTTCATAGCTAGTGGACCTCTCGATAGATGGCTACACCATGTGCCTAGA 1245
Query 1177 GGTGGTAGGAGCTTGGACTGGAACATGAGATTGAACATCGCCACAACTCTTGCCCAAGGG 1236
|||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1246 GGTGGTAGAAGCTTGGACTGGAACATGAGATTGAACATCGCCACAACTCTTGCTCAAGGA 1305
Query 1237 ATTGCGTTTCTACATGACAAGGTCAAACCGCAAGTGGTGCACCGCGACATCCGAGCAAGC 1296
|| ||||||||||| ||||||||||| || |||||||||||||||||||||||||| |||
Sbjct 1306 ATCGCGTTTCTACACGACAAGGTCAAGCCACAAGTGGTGCACCGCGACATCCGAGCTAGC 1365
Query 1297 AACGTGCTACTTGATGAGGAGTTTGGAGCTCATTTAATGGGCGTTGGTCTCTCAAAATTC 1356
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1366 AACGTGCTACTTGATGAGGAGTTTGGAGCTCATTTAATGGGTGTTGGTCTCTCAAAATTC 1425
Query 1357 GTCCCTTGGGAAGTAATGCAAGAGAGAACCGTAATGGCGGGTGGAACCTACGGTTACCTA 1416
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1426 GTTCCTTGGGAAGTAATGCAAGAGAGAACCGTAATGGCGGGTGGAACCTACGGTTACCTC 1485
Query 1417 GCACCCGAATACGTATACAGAAATGAACTAACCACGAAGAGCGATGTCTACAGTTTCGGA 1476
|||||||||||||| |||||||| || |||||||||||||||||||||||||||||||||
Sbjct 1486 GCACCCGAATACGTTTACAGAAACGAGCTAACCACGAAGAGCGATGTCTACAGTTTCGGA 1545
Query 1477 GTCCTTTTGCTTGAGATTGTGAGCGGTCGTAGACCAACTCAAGCGGTAAATTCTTCAGTT 1536
||||||||||||||||||||||||||||||||||||||||| || || ||||||||||||
Sbjct 1546 GTCCTTTTGCTTGAGATTGTGAGCGGTCGTAGACCAACTCAGGCTGTTAATTCTTCAGTT 1605
Query 1537 GGATGGCAGAGCATATTCGAATGGGCCACACCATTGGTTCAAGCAAACCGTTGGTTAGAG 1596
|| ||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||
Sbjct 1606 GGGTGGCAGAGCATATTCGAATGGGCAACACCATTGGTTCAAGCTAACCGTTGGTTAGAG 1665
Query 1597 ATTCTTGATCCGGTTATAACGTGCGGTTTACCGGAAGCAAGTGTGGTTCAGAAAGTTGTG 1656
||||||||||||||||| || |||||||||||||||||| |||||||||||||||||||
Sbjct 1666 ATTCTTGATCCGGTTATTACATGCGGTTTACCGGAAGCATGTGTGGTTCAGAAAGTTGTT 1725
Query 1657 GACTTGGTTTATTCTTGTACTCAAAATGTGCCATCAATGCGTCCAAGGATGTCACATGTT 1716
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1726 GACTTGGTTTATTCTTGTACTCAGAATGTGCCATCAATGCGTCCAAGGATGTCACATGTG 1785
Query 1717 GTTCATCAGCTTCAGCAATTGGTCCAACCATTAGAGATTAAGTAGTTAAATTACTTAACA 1776
||||||||||||||||||||||||||||| |||||| |||||||||||| ||| ||||||
Sbjct 1786 GTTCATCAGCTTCAGCAATTGGTCCAACCTTTAGAGGTTAAGTAGTTAA-TTAATTAACA 1844
Query 1777 TAAGTCTCAATAAAACACTTTTTGTTTGACTGTATAATCGAATCTTAGGAGACATTTCAT 1836
||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1845 TAAGTCTTAATAAAACACTTTTTGTTTGACTGTATAATCGAATCTTAGGAGAC-TT---- 1899
Query 1837 TGTCAAATTACTTTTTATGGAAAAAGTTAAGAAATGTTATAGCCAAAAACGATGTCGTAT 1896
|||| ||||||||| ||||| ||||| ||||||||||| |||||||| |||||||||||
Sbjct 1900 -GTCACATTACTTTTCATGGAGAAAGTAAAGAAATGTTAGAGCCAAAACCGATGTCGTAT 1958
Query 1897 TAGAGAAAGTTCTT 1910
|| |||||||||||
Sbjct 1959 TAAAGAAAGTTCTT 1972
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 94577826780
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5