BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg474348
Length=2581
Score E
Sequences producing significant alignments: (Bits) Value
AT1G52320.2 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 3626 0.0
> AT1G52320.2 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: N-terminal protein myristoylation;
LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant
structures; EXPRESSED DURING: 14 growth stages; CONTAINS
InterPro DOMAIN/s: Protein of unknown function DUF630 (InterPro:IPR006868),
Protein of unknown function DUF632 (InterPro:IPR006867);
BEST Arabidopsis thaliana protein match is: Protein
of unknown function (DUF630 and DUF632) (TAIR:AT5G25590.1);
Has 8725 Blast hits to 7476 proteins in 620 species: Archae
- 10; Bacteria - 622; Metazoa - 3286; Fungi - 1319; Plants
- 1442; Viruses - 221; Other Eukaryotes - 1825 (source:
NCBI BLink). | chr1:19484355-19487433 FORWARD LENGTH=2588
Length=2588
Score = 3626 bits (1963), Expect = 0.0
Identities = 2418/2623 (92%), Gaps = 90/2623 (3%)
Strand=Plus/Plus
Query 1 ATCTCTTCTTCTCTGATCGATCTGAAGTAAGAGAGCTTCGAGAGGAAGAAGACGAAGAAG 60
||||||||||||| ||||||||||||||||||||||||| ||| |||||||
Sbjct 13 ATCTCTTCTTCTCCGATCGATCTGAAGTAAGAGAGCTTC-------TTAAG--GAAGAAG 63
Query 61 AAGATGGGTTGTGCTCAATCTAAGATCGAGAACGAAGAAGCTGTTACTCGTTGCAAAGAA 120
|||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||
Sbjct 64 AAGATGGGTTGTGCTCAATCAAAGATCGAGAACGAAGAAGCAGTTACTCGTTGCAAAGAA 123
Query 121 CGAAAACAGTTGATGAAAGATGCCGTCACAGCTCGTAACGCTTTCGCCGCCGCACACTCA 180
|||||||| ||||||||||| |||||||| ||||||||||||||||||||||| ||||||
Sbjct 124 CGAAAACAATTGATGAAAGACGCCGTCACTGCTCGTAACGCTTTCGCCGCCGCTCACTCA 183
Query 181 GCTTACGCTATGGCTCTTAAAAACACCGGAGCTGCTCTTTCCGATTACTCTCACGGCGAA 240
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 184 GCTTACGCTATGGCTCTTAAAAACACCGGAGCTGCTCTTTCCGATTACTCTCACGGCGAG 243
Query 241 TTCTTAGTCTCTAATCACTCATCCTCCTCCTCCGCCGCAGCAATCGCTTCTACTTCTTCT 300
|| ||||||||||||||||| || |||||| | || ||||||||||||||||||||||||
Sbjct 244 TTTTTAGTCTCTAATCACTCGTCTTCCTCCGCAGCTGCAGCAATCGCTTCTACTTCTTCT 303
Query 301 CTTCCCACTGCTATATCTCCTCCTCTTCCTTCTTCTATCGC-CGCTGTTTCTAATTCAAC 359
||||||||||||||||||||||||||||||||||| | ||| | | ||||||||||||||
Sbjct 304 CTTCCCACTGCTATATCTCCTCCTCTTCCTTCTTCCACCGCTC-CGGTTTCTAATTCAAC 362
Query 360 CGCTTCTTC-T--TCCGCTGCGGTTCCTCAGCCGATTCCTGATACTCTtcctcctcctcc 416
||||||||| | |||||||||||||||||||||||||||||||||| | |||||||||
Sbjct 363 CGCTTCTTCTTCCTCCGCTGCGGTTCCTCAGCCGATTCCTGATACTC-T--TCCTCCTCC 419
Query 417 tcctcctccACCACCGCTTCCTCTTCAACGCGCTGCTACTATGCCGGAGATGAACGGTAG 476
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 420 TCCTCCTCCACCACCGCTTCCTCTTCAACGTGCTGCTACTATGCCGGAGATGAACGGTAG 479
Query 477 ATCCGGTGGTGGTCCTTCTGGTAATGGTCTTAATGGAATTGAAGAAGATGGAACTCTAGA 536
|||||||||||||| | |||||| ||| || || |||||||||||||||||| | |||||
Sbjct 480 ATCCGGTGGTGGTCATGCTGGTAGTGGACTCAACGGAATTGAAGAAGATGGAGCCCTAGA 539
Query 537 TAAC---gatgat---gatgatgatgatgat---TCTGAATTGGAGAATCATGATCGTTT 587
|||| |||||| ||||||||||||||| |||||| ||||||||| |||||||||
Sbjct 540 TAACGATGATGATGACGATGATGATGATGATGACTCTGAAATGGAGAATCGTGATCGTTT 599
Query 588 GATTAGGAAATCGAGAAGCC------GT-G-----GAGG---TAGGACGACGATTGAAGA 632
|||||||||||||||||||| || | |||| ||||||||||||||||||
Sbjct 600 GATTAGGAAATCGAGAAGCCGTGGAGGTAGTACTAGAGGAAATAGGACGACGATTGAAGA 659
Query 633 TCATCATCACCAGGAGGAGAAAGCTCCACCACCTCCTCCGGCGGCGAATTCACAGCCAAT 692
|||||||| ||||||||||||||||| |||||||| || ||||||||||| ||||||
Sbjct 660 TCATCATCTTCAGGAGGAGAAAGCTCCGCCACCTCCCCCTTTGGCGAATTCACGGCCAAT 719
Query 693 TCCGCCGCCACGTCAGCATCAGCATCAACATCAACAACAGCAACAACAACCTTTCTATGA 752
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct 720 TCCGCCGCCACGTCAGCATCAGCATCAACATCAGCAACAGCAACAACAACCTTTCTACGA 779
Query 753 TTACTTCTTCCCTAATGTTGAGAATATGCCTGGAACTACTTTAGAAGACACTCCTccaca 812
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 780 TTACTTCTTCCCTAATGTTGAGAATATGCCTGGAACTACTTTAGAAGATACTCCT----- 834
Query 813 accacaaccacaaccacaaccaacaaGACCTGTGCCTCCTCAACCACATTCACCAGTCGT 872
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 835 -CCACAACCACAACCACAACCAACAAGGCCTGTGCCTCCTCAACCACATTCACCAGTCGT 893
Query 873 CACtgaagga-gaagaagatgaggaggaggaggaggaagatgaggaagatgaggaggagg 931
|||| |||| || ||||||||||||||||| | | || || | || | |||||||
Sbjct 894 TACTG-AGGATGACGAAGATGAGGAGGAGGA--A-G-AG--GA-G--GA--A-GAGGAGG 940
Query 932 aggaggaggaggagACGGTGCTTGAACGGAAACCACCGGTGGAGGAAAGACCAAAGAGAG 991
|||| | |||||||||||| ||||||||||||||| ||||||||||||||| |||||||
Sbjct 941 AGGA--A-GAGGAGACGGTGATTGAACGGAAACCACTGGTGGAGGAAAGACCGAAGAGAG 997
Query 992 TGGAGGAAGTGAGTG-TTGAATCGGAAAAAGTTACTAATTTGAGAGGGATGAAGAAGAGT 1050
| |||||||||| | |||||| |||||||||||||||||||||||||||||||||||||
Sbjct 998 TAGAGGAAGTGA-CGATTGAATTGGAAAAAGTTACTAATTTGAGAGGGATGAAGAAGAGT 1056
Query 1051 AAAGGGATAGGGATTCCCGGAGAGAGGAGAGGAGTGAGAAT-----T---T-CGACGAAT 1101
||||||||||||||||||||||||||||||||| || |||| | | ||||| ||
Sbjct 1057 AAAGGGATAGGGATTCCCGGAGAGAGGAGAGGAATGCGAATGCCGGTGACTGCGACGCAT 1116
Query 1102 TTGGTGAATGTATTCAATGAGCTTGATGATAGTTTCTTGAAAGCTTCTGAAAGTGCTCAT 1161
|||| ||||||||||| |||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1117 TTGGCGAATGTATTCATTGAGCTTGATGATAATTTCTTGAAAGCTTCTGAAAGTGCTCAT 1176
Query 1162 GAAGTTTCAAAGATGCTTGAAGCTACTAGGCTCCATTACCATTCTAATTTCGCCGATAAC 1221
|| ||||| ||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 1177 GATGTTTCTAAGATGCTTGAAGCTACTAGGCTCCATTACCATTCTAATTTTGCAGATAAC 1236
Query 1222 CGAGGACATATTGATCACTCTGCTAGAGTGATGCGTGTAATTACATGGAATAGATCGTTT 1281
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1237 CGAGGACATATTGATCACTCTGCTAGAGTGATGCGTGTAATTACATGGAATAGATCATTT 1296
Query 1282 AGAGGAATACCAAATGCTGATGATGGGAAAGATGATGTTGATTTGGAAGACAATGAAACT 1341
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1297 AGAGGAATACCAAATGCTGATGATGGGAAAGATGATGTTGATTTGGAAGAGAATGAAACT 1356
Query 1342 CATGCTACTGTTCTTGACAAATTGCTAGCATGGGAAAAGAAGCTCTACGACGAAGTCAAG 1401
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1357 CATGCTACTGTTCTTGACAAATTGCTAGCATGGGAAAAGAAGCTCTATGACGAAGTCAAG 1416
Query 1402 GCGGGCGAACTCATGAAAATTGAGTACCAGAAAAAGGTTGCTCATTTAAATCGGGTGAAG 1461
|| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1417 GCTGGCGAACTCATGAAAATCGAGTACCAGAAAAAGGTTGCTCATTTAAATCGGGTGAAG 1476
Query 1462 AAACGAGGTGGCCACTCGGATTCATTAGAGAGAGCTAAAGCAGCAGTTAGTCATTTGCAT 1521
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1477 AAACGAGGTGGCCACTCGGATTCATTAGAGAGAGCTAAAGCAGCAGTAAGTCATTTGCAT 1536
Query 1522 ACTAGATACATAGTTGATATGCAATCCATGGACTCCACAGTTTCAGAGATCAATCGTCTT 1581
|| ||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1537 ACAAGATATATAGTTGATATGCAATCCATGGACTCCACAGTTTCAGAAATCAATCGTCTT 1596
Query 1582 CGAGATGAACAACTATACCTAAAGCTCATTCTCCTTGTCGAAGCGATGGGGAAGATGTGG 1641
| |||||||||||||||||||||||| ||| |||||| || ||||||||||||||||||
Sbjct 1597 AGGGATGAACAACTATACCTAAAGCTCGTTCACCTTGTTGAGGCGATGGGGAAGATGTGG 1656
Query 1642 GAAATGATGCAAATGCATCATCAAAGACAAGCTGAGATCTCAAAGGTTTTGAAATCTCTA 1701
|||||||||||||| |||||||||||||||||||||||||||||||| |||| |||||||
Sbjct 1657 GAAATGATGCAAATACATCATCAAAGACAAGCTGAGATCTCAAAGGTGTTGAGATCTCTA 1716
Query 1702 GACGTTTCGCAATCGGTGAAAGAAACAAATGATCATCATCACGAACGCACCATCCAGCTC 1761
|| ||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1717 GATGTTTCACAAGCGGTGAAAGAAACAAATGATCATCATCACGAACGCACCATCCAGCTC 1776
Query 1762 TTGGCGGTGGTTCAAGAATGGCACACGCAGTTTTGCAGGATGATAGATCATCAGAAAGAA 1821
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1777 TTGGCAGTGGTTCAAGAATGGCACACGCAGTTTTGCAGGATGATAGATCATCAGAAAGAA 1836
Query 1822 TACATAAAAGCACTTGGCGGATGGCTAAGGCTAAATCTCATCCCTATCGAAAGCACACTC 1881
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1837 TACATAAAAGCACTTGGCGGATGGCTAAAGCTAAATCTCATCCCTATCGAAAGCACACTC 1896
Query 1882 AAGGAGAAAGTATCTTCGCCTCCTCGAGTTCCCAATCCCGCAATCCAAAAACTCCTCCAC 1941
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1897 AAGGAGAAAGTATCTTCGCCTCCTCGAGTTCCCAATCCCGCAATCCAAAAACTCCTCCAC 1956
Query 1942 GCTTGGTATGACCGTTTAGACAAAATCCCTGACGAAATGGCTAGAACTGCCATAATCAAT 2001
||||||||||||||||||||||||||||| ||||||||||||| || |||||||||||||
Sbjct 1957 GCTTGGTATGACCGTTTAGACAAAATCCCCGACGAAATGGCTAAAAGTGCCATAATCAAT 2016
Query 2002 TTCGCAGCGGTTGTAAGCACGATAATGCAGCAGCAAGAAGACGAGATAAATCTCAGAAAC 2061
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 2017 TTCGCAGCGGTTGTAAGCACGATAATGCAGCAGCAAGAAGACGAGATAAGTCTCAGAAAC 2076
Query 2062 AAATGCGAAGAGACaaaaaaaGAACTGGGAAGAAAAATCAGACAGTTTGAGGAGTGGTAC 2121
|||||||||||||||| ||||||| ||||||||||||| |||||||||||||| ||||||
Sbjct 2077 AAATGCGAAGAGACAAGAAAAGAATTGGGAAGAAAAATTAGACAGTTTGAGGATTGGTAC 2136
Query 2122 TATAAATACATGCAGAAGAGAGGACCGGAAGGGATGAATCCGGATGGGTCAGAAGCGGAT 2181
| |||||||| ||||||||||||||||| |||||||||||||||| | | ||||||
Sbjct 2137 CACAAATACATCCAGAAGAGAGGACCGGAGGGGATGAATCCGGATG----A-A-GCGGAT 2190
Query 2182 AACGATCATAAAGACGAGGTCA-TGGTGCGGCAATTTAATGTAGAACAAATTaagaagag 2240
||||||||||| || |||||| || || ||||||| |||||||||||||||||||||||
Sbjct 2191 AACGATCATAATGATGAGGTCGCTG-TGAGGCAATTCAATGTAGAACAAATTAAGAAGAG 2249
Query 2241 gttggaagaagaagaagaagCTTACCACAGGCAAAGCCATCAAGTTAGAGAGAAGTCACT 2300
||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||
Sbjct 2250 GTTGGAAGAAGAAGAAGAAGCTTACCATAGACAAAGCCATCAAGTTAGAGAGAAGTCACT 2309
Query 2301 GGCTAGTCTTCGAACTCGCCTCCCCGAGCTTTTTCAGGCAATGTACGAGGTTGCGTATTC 2360
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 2310 GGCTAGTCTTCGAACTCGCCTCCCCGAGCTTTTTCAGGCAATGTCCGAGGTTGCGTATTC 2369
Query 2361 GTGTTCAGATATGTATAGAGCTGTTACGTATTTGACTAAGCGGCAAAGCCAAAGCGAACG 2420
||||| ||||||||||||||| | |||||| || ||||||||||||||||||||||||
Sbjct 2370 ATGTTCGGATATGTATAGAGCTATAACGTATGCGAGTAAGCGGCAAAGCCAAAGCGAACG 2429
Query 2421 GCATCAGAAACCTAGCCAGGGACAGAGTTCGTAAGAACTAATGTAAGTTTTGGGTTTTAT 2480
|||||||||||||||||||||||||||||||||||||||||||| ||| || |||| |
Sbjct 2430 GCATCAGAAACCTAGCCAGGGACAGAGTTCGTAAGAACTAATGT---TTT-GGCTTTTGT 2485
Query 2481 AAGAAGGTTTGTTACATCTGAGATTCATA--GTGTTTGATTCTTAAGGAACTGTTATGTT 2538
|||||||||| |||||| ||||||||||| |||||||||||||||||||||||| ||||
Sbjct 2486 AAGAAGGTTTCTTACATATGAGATTCATATAGTGTTTGATTCTTAAGGAACTGTTCTGTT 2545
Query 2539 GAGTAATAAGAAAAGTTGTGTATTGAAATAGAGTTGCATTTGT 2581
||||||||||||| |||||||||||||||||||||||||||||
Sbjct 2546 GAGTAATAAGAAA-GTTGTGTATTGAAATAGAGTTGCATTTGT 2587
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 128126372422
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5