BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg474348 Length=2581 Score E Sequences producing significant alignments: (Bits) Value AT1G52320.2 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 3626 0.0 > AT1G52320.2 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF630 (InterPro:IPR006868), Protein of unknown function DUF632 (InterPro:IPR006867); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF630 and DUF632) (TAIR:AT5G25590.1); Has 8725 Blast hits to 7476 proteins in 620 species: Archae - 10; Bacteria - 622; Metazoa - 3286; Fungi - 1319; Plants - 1442; Viruses - 221; Other Eukaryotes - 1825 (source: NCBI BLink). | chr1:19484355-19487433 FORWARD LENGTH=2588 Length=2588 Score = 3626 bits (1963), Expect = 0.0 Identities = 2418/2623 (92%), Gaps = 90/2623 (3%) Strand=Plus/Plus Query 1 ATCTCTTCTTCTCTGATCGATCTGAAGTAAGAGAGCTTCGAGAGGAAGAAGACGAAGAAG 60 ||||||||||||| ||||||||||||||||||||||||| ||| ||||||| Sbjct 13 ATCTCTTCTTCTCCGATCGATCTGAAGTAAGAGAGCTTC-------TTAAG--GAAGAAG 63 Query 61 AAGATGGGTTGTGCTCAATCTAAGATCGAGAACGAAGAAGCTGTTACTCGTTGCAAAGAA 120 |||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||| Sbjct 64 AAGATGGGTTGTGCTCAATCAAAGATCGAGAACGAAGAAGCAGTTACTCGTTGCAAAGAA 123 Query 121 CGAAAACAGTTGATGAAAGATGCCGTCACAGCTCGTAACGCTTTCGCCGCCGCACACTCA 180 |||||||| ||||||||||| |||||||| ||||||||||||||||||||||| |||||| Sbjct 124 CGAAAACAATTGATGAAAGACGCCGTCACTGCTCGTAACGCTTTCGCCGCCGCTCACTCA 183 Query 181 GCTTACGCTATGGCTCTTAAAAACACCGGAGCTGCTCTTTCCGATTACTCTCACGGCGAA 240 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 184 GCTTACGCTATGGCTCTTAAAAACACCGGAGCTGCTCTTTCCGATTACTCTCACGGCGAG 243 Query 241 TTCTTAGTCTCTAATCACTCATCCTCCTCCTCCGCCGCAGCAATCGCTTCTACTTCTTCT 300 || ||||||||||||||||| || |||||| | || |||||||||||||||||||||||| Sbjct 244 TTTTTAGTCTCTAATCACTCGTCTTCCTCCGCAGCTGCAGCAATCGCTTCTACTTCTTCT 303 Query 301 CTTCCCACTGCTATATCTCCTCCTCTTCCTTCTTCTATCGC-CGCTGTTTCTAATTCAAC 359 ||||||||||||||||||||||||||||||||||| | ||| | | |||||||||||||| Sbjct 304 CTTCCCACTGCTATATCTCCTCCTCTTCCTTCTTCCACCGCTC-CGGTTTCTAATTCAAC 362 Query 360 CGCTTCTTC-T--TCCGCTGCGGTTCCTCAGCCGATTCCTGATACTCTtcctcctcctcc 416 ||||||||| | |||||||||||||||||||||||||||||||||| | ||||||||| Sbjct 363 CGCTTCTTCTTCCTCCGCTGCGGTTCCTCAGCCGATTCCTGATACTC-T--TCCTCCTCC 419 Query 417 tcctcctccACCACCGCTTCCTCTTCAACGCGCTGCTACTATGCCGGAGATGAACGGTAG 476 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 420 TCCTCCTCCACCACCGCTTCCTCTTCAACGTGCTGCTACTATGCCGGAGATGAACGGTAG 479 Query 477 ATCCGGTGGTGGTCCTTCTGGTAATGGTCTTAATGGAATTGAAGAAGATGGAACTCTAGA 536 |||||||||||||| | |||||| ||| || || |||||||||||||||||| | ||||| Sbjct 480 ATCCGGTGGTGGTCATGCTGGTAGTGGACTCAACGGAATTGAAGAAGATGGAGCCCTAGA 539 Query 537 TAAC---gatgat---gatgatgatgatgat---TCTGAATTGGAGAATCATGATCGTTT 587 |||| |||||| ||||||||||||||| |||||| ||||||||| ||||||||| Sbjct 540 TAACGATGATGATGACGATGATGATGATGATGACTCTGAAATGGAGAATCGTGATCGTTT 599 Query 588 GATTAGGAAATCGAGAAGCC------GT-G-----GAGG---TAGGACGACGATTGAAGA 632 |||||||||||||||||||| || | |||| |||||||||||||||||| Sbjct 600 GATTAGGAAATCGAGAAGCCGTGGAGGTAGTACTAGAGGAAATAGGACGACGATTGAAGA 659 Query 633 TCATCATCACCAGGAGGAGAAAGCTCCACCACCTCCTCCGGCGGCGAATTCACAGCCAAT 692 |||||||| ||||||||||||||||| |||||||| || ||||||||||| |||||| Sbjct 660 TCATCATCTTCAGGAGGAGAAAGCTCCGCCACCTCCCCCTTTGGCGAATTCACGGCCAAT 719 Query 693 TCCGCCGCCACGTCAGCATCAGCATCAACATCAACAACAGCAACAACAACCTTTCTATGA 752 ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| || Sbjct 720 TCCGCCGCCACGTCAGCATCAGCATCAACATCAGCAACAGCAACAACAACCTTTCTACGA 779 Query 753 TTACTTCTTCCCTAATGTTGAGAATATGCCTGGAACTACTTTAGAAGACACTCCTccaca 812 |||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 780 TTACTTCTTCCCTAATGTTGAGAATATGCCTGGAACTACTTTAGAAGATACTCCT----- 834 Query 813 accacaaccacaaccacaaccaacaaGACCTGTGCCTCCTCAACCACATTCACCAGTCGT 872 |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 835 -CCACAACCACAACCACAACCAACAAGGCCTGTGCCTCCTCAACCACATTCACCAGTCGT 893 Query 873 CACtgaagga-gaagaagatgaggaggaggaggaggaagatgaggaagatgaggaggagg 931 |||| |||| || ||||||||||||||||| | | || || | || | ||||||| Sbjct 894 TACTG-AGGATGACGAAGATGAGGAGGAGGA--A-G-AG--GA-G--GA--A-GAGGAGG 940 Query 932 aggaggaggaggagACGGTGCTTGAACGGAAACCACCGGTGGAGGAAAGACCAAAGAGAG 991 |||| | |||||||||||| ||||||||||||||| ||||||||||||||| ||||||| Sbjct 941 AGGA--A-GAGGAGACGGTGATTGAACGGAAACCACTGGTGGAGGAAAGACCGAAGAGAG 997 Query 992 TGGAGGAAGTGAGTG-TTGAATCGGAAAAAGTTACTAATTTGAGAGGGATGAAGAAGAGT 1050 | |||||||||| | |||||| ||||||||||||||||||||||||||||||||||||| Sbjct 998 TAGAGGAAGTGA-CGATTGAATTGGAAAAAGTTACTAATTTGAGAGGGATGAAGAAGAGT 1056 Query 1051 AAAGGGATAGGGATTCCCGGAGAGAGGAGAGGAGTGAGAAT-----T---T-CGACGAAT 1101 ||||||||||||||||||||||||||||||||| || |||| | | ||||| || Sbjct 1057 AAAGGGATAGGGATTCCCGGAGAGAGGAGAGGAATGCGAATGCCGGTGACTGCGACGCAT 1116 Query 1102 TTGGTGAATGTATTCAATGAGCTTGATGATAGTTTCTTGAAAGCTTCTGAAAGTGCTCAT 1161 |||| ||||||||||| |||||||||||||| |||||||||||||||||||||||||||| Sbjct 1117 TTGGCGAATGTATTCATTGAGCTTGATGATAATTTCTTGAAAGCTTCTGAAAGTGCTCAT 1176 Query 1162 GAAGTTTCAAAGATGCTTGAAGCTACTAGGCTCCATTACCATTCTAATTTCGCCGATAAC 1221 || ||||| ||||||||||||||||||||||||||||||||||||||||| || |||||| Sbjct 1177 GATGTTTCTAAGATGCTTGAAGCTACTAGGCTCCATTACCATTCTAATTTTGCAGATAAC 1236 Query 1222 CGAGGACATATTGATCACTCTGCTAGAGTGATGCGTGTAATTACATGGAATAGATCGTTT 1281 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 1237 CGAGGACATATTGATCACTCTGCTAGAGTGATGCGTGTAATTACATGGAATAGATCATTT 1296 Query 1282 AGAGGAATACCAAATGCTGATGATGGGAAAGATGATGTTGATTTGGAAGACAATGAAACT 1341 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 1297 AGAGGAATACCAAATGCTGATGATGGGAAAGATGATGTTGATTTGGAAGAGAATGAAACT 1356 Query 1342 CATGCTACTGTTCTTGACAAATTGCTAGCATGGGAAAAGAAGCTCTACGACGAAGTCAAG 1401 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 1357 CATGCTACTGTTCTTGACAAATTGCTAGCATGGGAAAAGAAGCTCTATGACGAAGTCAAG 1416 Query 1402 GCGGGCGAACTCATGAAAATTGAGTACCAGAAAAAGGTTGCTCATTTAAATCGGGTGAAG 1461 || ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 1417 GCTGGCGAACTCATGAAAATCGAGTACCAGAAAAAGGTTGCTCATTTAAATCGGGTGAAG 1476 Query 1462 AAACGAGGTGGCCACTCGGATTCATTAGAGAGAGCTAAAGCAGCAGTTAGTCATTTGCAT 1521 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 1477 AAACGAGGTGGCCACTCGGATTCATTAGAGAGAGCTAAAGCAGCAGTAAGTCATTTGCAT 1536 Query 1522 ACTAGATACATAGTTGATATGCAATCCATGGACTCCACAGTTTCAGAGATCAATCGTCTT 1581 || ||||| |||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 1537 ACAAGATATATAGTTGATATGCAATCCATGGACTCCACAGTTTCAGAAATCAATCGTCTT 1596 Query 1582 CGAGATGAACAACTATACCTAAAGCTCATTCTCCTTGTCGAAGCGATGGGGAAGATGTGG 1641 | |||||||||||||||||||||||| ||| |||||| || |||||||||||||||||| Sbjct 1597 AGGGATGAACAACTATACCTAAAGCTCGTTCACCTTGTTGAGGCGATGGGGAAGATGTGG 1656 Query 1642 GAAATGATGCAAATGCATCATCAAAGACAAGCTGAGATCTCAAAGGTTTTGAAATCTCTA 1701 |||||||||||||| |||||||||||||||||||||||||||||||| |||| ||||||| Sbjct 1657 GAAATGATGCAAATACATCATCAAAGACAAGCTGAGATCTCAAAGGTGTTGAGATCTCTA 1716 Query 1702 GACGTTTCGCAATCGGTGAAAGAAACAAATGATCATCATCACGAACGCACCATCCAGCTC 1761 || ||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1717 GATGTTTCACAAGCGGTGAAAGAAACAAATGATCATCATCACGAACGCACCATCCAGCTC 1776 Query 1762 TTGGCGGTGGTTCAAGAATGGCACACGCAGTTTTGCAGGATGATAGATCATCAGAAAGAA 1821 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1777 TTGGCAGTGGTTCAAGAATGGCACACGCAGTTTTGCAGGATGATAGATCATCAGAAAGAA 1836 Query 1822 TACATAAAAGCACTTGGCGGATGGCTAAGGCTAAATCTCATCCCTATCGAAAGCACACTC 1881 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 1837 TACATAAAAGCACTTGGCGGATGGCTAAAGCTAAATCTCATCCCTATCGAAAGCACACTC 1896 Query 1882 AAGGAGAAAGTATCTTCGCCTCCTCGAGTTCCCAATCCCGCAATCCAAAAACTCCTCCAC 1941 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1897 AAGGAGAAAGTATCTTCGCCTCCTCGAGTTCCCAATCCCGCAATCCAAAAACTCCTCCAC 1956 Query 1942 GCTTGGTATGACCGTTTAGACAAAATCCCTGACGAAATGGCTAGAACTGCCATAATCAAT 2001 ||||||||||||||||||||||||||||| ||||||||||||| || ||||||||||||| Sbjct 1957 GCTTGGTATGACCGTTTAGACAAAATCCCCGACGAAATGGCTAAAAGTGCCATAATCAAT 2016 Query 2002 TTCGCAGCGGTTGTAAGCACGATAATGCAGCAGCAAGAAGACGAGATAAATCTCAGAAAC 2061 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 2017 TTCGCAGCGGTTGTAAGCACGATAATGCAGCAGCAAGAAGACGAGATAAGTCTCAGAAAC 2076 Query 2062 AAATGCGAAGAGACaaaaaaaGAACTGGGAAGAAAAATCAGACAGTTTGAGGAGTGGTAC 2121 |||||||||||||||| ||||||| ||||||||||||| |||||||||||||| |||||| Sbjct 2077 AAATGCGAAGAGACAAGAAAAGAATTGGGAAGAAAAATTAGACAGTTTGAGGATTGGTAC 2136 Query 2122 TATAAATACATGCAGAAGAGAGGACCGGAAGGGATGAATCCGGATGGGTCAGAAGCGGAT 2181 | |||||||| ||||||||||||||||| |||||||||||||||| | | |||||| Sbjct 2137 CACAAATACATCCAGAAGAGAGGACCGGAGGGGATGAATCCGGATG----A-A-GCGGAT 2190 Query 2182 AACGATCATAAAGACGAGGTCA-TGGTGCGGCAATTTAATGTAGAACAAATTaagaagag 2240 ||||||||||| || |||||| || || ||||||| ||||||||||||||||||||||| Sbjct 2191 AACGATCATAATGATGAGGTCGCTG-TGAGGCAATTCAATGTAGAACAAATTAAGAAGAG 2249 Query 2241 gttggaagaagaagaagaagCTTACCACAGGCAAAGCCATCAAGTTAGAGAGAAGTCACT 2300 ||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||| Sbjct 2250 GTTGGAAGAAGAAGAAGAAGCTTACCATAGACAAAGCCATCAAGTTAGAGAGAAGTCACT 2309 Query 2301 GGCTAGTCTTCGAACTCGCCTCCCCGAGCTTTTTCAGGCAATGTACGAGGTTGCGTATTC 2360 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 2310 GGCTAGTCTTCGAACTCGCCTCCCCGAGCTTTTTCAGGCAATGTCCGAGGTTGCGTATTC 2369 Query 2361 GTGTTCAGATATGTATAGAGCTGTTACGTATTTGACTAAGCGGCAAAGCCAAAGCGAACG 2420 ||||| ||||||||||||||| | |||||| || |||||||||||||||||||||||| Sbjct 2370 ATGTTCGGATATGTATAGAGCTATAACGTATGCGAGTAAGCGGCAAAGCCAAAGCGAACG 2429 Query 2421 GCATCAGAAACCTAGCCAGGGACAGAGTTCGTAAGAACTAATGTAAGTTTTGGGTTTTAT 2480 |||||||||||||||||||||||||||||||||||||||||||| ||| || |||| | Sbjct 2430 GCATCAGAAACCTAGCCAGGGACAGAGTTCGTAAGAACTAATGT---TTT-GGCTTTTGT 2485 Query 2481 AAGAAGGTTTGTTACATCTGAGATTCATA--GTGTTTGATTCTTAAGGAACTGTTATGTT 2538 |||||||||| |||||| ||||||||||| |||||||||||||||||||||||| |||| Sbjct 2486 AAGAAGGTTTCTTACATATGAGATTCATATAGTGTTTGATTCTTAAGGAACTGTTCTGTT 2545 Query 2539 GAGTAATAAGAAAAGTTGTGTATTGAAATAGAGTTGCATTTGT 2581 ||||||||||||| ||||||||||||||||||||||||||||| Sbjct 2546 GAGTAATAAGAAA-GTTGTGTATTGAAATAGAGTTGCATTTGT 2587 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 128126372422 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5