BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg474352

Length=510
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G52325.1 | Symbols:  | Initiation factor eIF-4 gamma, MA3 | ...   296    1e-79


> AT1G52325.1 | Symbols:  | Initiation factor eIF-4 gamma, MA3 
| chr1:19487793-19488418 REVERSE LENGTH=438
Length=438

 Score =  296 bits (160),  Expect = 1e-79
 Identities = 219/247 (89%), Gaps = 5/247 (2%)
 Strand=Plus/Plus

Query  265  CTATTAGGAATTAAGCTTTTGAATGAAAAGCTTCATGATCCAACCATGGAGGAGACGTTC  324
            |||||| |||||||||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct  196  CTATTAAGAATTAAGCTTTTGAATGAAAAGCTTCAAGATCCAACCATGGAGGAGACATTC  255

Query  325  GAGTCCATCTTCCCAAAGGACCATTTAAAAAACACGTTGTTCTCCATCA-ACTTCTTCAC  383
            ||||||||||||||||||||||||  ||||||||||||||||||||| | | || |||||
Sbjct  256  GAGTCCATCTTCCCAAAGGACCATCGAAAAAACACGTTGTTCTCCATTATA-TTTTTCAC  314

Query  384  CAAAATTGGCCTCGGGGGCATCACTCAAAAACTAAGGCAGTTCATCGCCAAGCGCAAGGA  443
            |||||| |||||||| || || ||||||| |||||||||| |||||||||||||||||||
Sbjct  315  CAAAATCGGCCTCGGTGGAATTACTCAAACACTAAGGCAGCTCATCGCCAAGCGCAAGGA  374

Query  444  AACTGATTCAGAGGAATCAAGTGGTGATGATGGGACGAAGAGGAAGCGTAGAAGAAAAAG  503
            |||||||||||||||   || |   || |||| || |  || ||||||||||||||||||
Sbjct  375  AACTGATTCAGAGGACG-AATTAA-GA-GATGAGATGGTGATGAAGCGTAGAAGAAAAAG  431

Query  504  AGGTTGA  510
            |||||||
Sbjct  432  AGGTTGA  438


 Score =  206 bits (111),  Expect = 2e-52
 Identities = 128/136 (94%), Gaps = 2/136 (1%)
 Strand=Plus/Plus

Query  1    ATGTCAAGTCTTGATTTTGAGGAAGCAGGGCATAAACTGCTCAAAATCAGACTAGAACAA  60
            ||||||||||||||||| ||||||||||||||||| |||||||| || ||||||||||||
Sbjct  1    ATGTCAAGTCTTGATTTCGAGGAAGCAGGGCATAAGCTGCTCAAGATAAGACTAGAACAA  60

Query  61   GGTCAA-GAGAGGGAGCTATGTGTTATGGTGCTTGAATGTTGCACTGAGGAGAAAACTTA  119
            |||||| || | |||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct  61   GGTCAAGGA-ATGGAGCTTTGTGTTATGGTGCTTGAATGTTGCACTGAGGAGAAAACTTA  119

Query  120  TCGTTCCTTCTATGTT  135
            ||||||||||||||||
Sbjct  120  TCGTTCCTTCTATGTT  135



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 24363561295


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5