BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg474353
Length=678
Score E
Sequences producing significant alignments: (Bits) Value
AT1G52330.2 | Symbols: | Late embryogenesis abundant (LEA) hyd... 918 0.0
> AT1G52330.2 | Symbols: | Late embryogenesis abundant (LEA) hydroxyproline-rich
glycoprotein family | chr1:19488943-19489914
FORWARD LENGTH=972
Length=972
Score = 918 bits (497), Expect = 0.0
Identities = 565/596 (95%), Gaps = 12/596 (2%)
Strand=Plus/Plus
Query 1 ATCTCCTCTCTCATGAACAATGACCGG-AGAAGAAGACCCTAAAGCAGCAACTCCGTCAT 59
||||||||||||||||||||||| ||| ||||||||| ||| || ||||||||||||||
Sbjct 1 ATCTCCTCTCTCATGAACAATGA-CGGTAGAAGAAGATCCT-AA--AGCAACTCCGTCAT 56
Query 60 TACCGGACTATAAGCCTTTACCTTC--C-TCAAGTCACGATCAAAACGACGCCGTTCTGA 116
|||| ||||| |||||||||||||| | ||||||||||| | |||||||||||||||||
Sbjct 57 TACCAGACTACAAGCCTTTACCTTCATCATCAAGTCACGAGCTAAACGACGCCGTTCTGA 116
Query 117 TCTCATCACATTCTTCT-TTCACCTCCCGACGCCGTTTCATCATCTCTATATTTCTCATA 175
||||||||||| ||||| || |||| |||||||||||||||||||||||||||||||||
Sbjct 117 TCTCATCACATCCTTCTCCTC-CCTCACGACGCCGTTTCATCATCTCTATATTTCTCATA 175
Query 176 TCTTTTGCCTCGATCCTCATCTACATCTTCTGGCCGTCCGATCCACGAATCAAGATCGTA 235
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||
Sbjct 176 TCTTTTGCCTCGATCCTCATCTACATCTTCTGGCCGTCCGATCCACGCATCAAGATCATA 235
Query 236 CGGGTCAAGATTTCCCACGTGCACGTTCACCGCCGTCCGGTTCCGTCTATAGACATGACG 295
|||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 236 CGGGTCAAAATTTCCCACGTGCACGTTCACCGCCGTCCGGTGCCGTCTATAGACATGACG 295
Query 296 TTGCTCGTTACGCTTAAGGTATCAAATGCTGACGTGTACTCTTTTGACTTCACGGATCTT 355
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 296 TTGCTCGTTACGCTTAAGGTATCAAATGCTGACGTGTACTCTTTTGACTTCACGGATCTT 355
Query 356 GACGTCACGATTGACTATAGAGGGAAGACGTTAGGTCACGTGAGTTCTGATGGCGGGCAC 415
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 356 GACGTCACGATTGACTATAGAGGGAAGACGTTAGGTCACGTGAGTTCTGATGGCGGGCAC 415
Query 416 GTGACGGCTTTTGGTTCTTCTTACCTTGACGCGGAGGCTGAGCTAGAGGGCGTTACGGTG 475
|||||||||||||||||||||||||||||||||||||||||||| || ||||| | ||||
Sbjct 416 GTGACGGCTTTTGGTTCTTCTTACCTTGACGCGGAGGCTGAGCTTGACGGCGTCATGGTG 475
Query 476 TTTCCTGACGTCATTCATTTGATTCACGATTTGGCTAAAGGCTCCGTTGAATTTGACACC 535
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 476 TTTCCTGACGTCATTCATTTGATTCACGATTTAGCTAAAGGCTCCGTTGAATTTGACACC 535
Query 536 GTTACGGAGACTAACGG-AAACCTTGGTGTTTGGTTCTTCCGTTTCCCTTTAAAGG 590
||||||||||||||||| |||| |||| |||| |||||||||||||||||||||||
Sbjct 536 GTTACGGAGACTAACGGGAAAC-TTGGCGTTTTGTTCTTCCGTTTCCCTTTAAAGG 590
Score = 135 bits (73), Expect = 4e-31
Identities = 86/92 (93%), Gaps = 2/92 (2%)
Strand=Plus/Plus
Query 588 AGGCAAAAGTGGCATGTGGGATTCTAGTA-ATTACAGTTAATCAGACGATTTCTCGTCAA 646
||||||||||||||||||||||||||||| | ||| ||||||||||| ||||||||||||
Sbjct 745 AGGCAAAAGTGGCATGTGGGATTCTAGTAGA-TACTGTTAATCAGACAATTTCTCGTCAA 803
Query 647 AGTTGTAGTCCTCTCTAATTTAAGACACATCA 678
|||||||||||||||||||| |||| ||||||
Sbjct 804 AGTTGTAGTCCTCTCTAATTCAAGAAACATCA 835
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32802897991
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5