BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg474353 Length=678 Score E Sequences producing significant alignments: (Bits) Value AT1G52330.2 | Symbols: | Late embryogenesis abundant (LEA) hyd... 918 0.0 > AT1G52330.2 | Symbols: | Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family | chr1:19488943-19489914 FORWARD LENGTH=972 Length=972 Score = 918 bits (497), Expect = 0.0 Identities = 565/596 (95%), Gaps = 12/596 (2%) Strand=Plus/Plus Query 1 ATCTCCTCTCTCATGAACAATGACCGG-AGAAGAAGACCCTAAAGCAGCAACTCCGTCAT 59 ||||||||||||||||||||||| ||| ||||||||| ||| || |||||||||||||| Sbjct 1 ATCTCCTCTCTCATGAACAATGA-CGGTAGAAGAAGATCCT-AA--AGCAACTCCGTCAT 56 Query 60 TACCGGACTATAAGCCTTTACCTTC--C-TCAAGTCACGATCAAAACGACGCCGTTCTGA 116 |||| ||||| |||||||||||||| | ||||||||||| | ||||||||||||||||| Sbjct 57 TACCAGACTACAAGCCTTTACCTTCATCATCAAGTCACGAGCTAAACGACGCCGTTCTGA 116 Query 117 TCTCATCACATTCTTCT-TTCACCTCCCGACGCCGTTTCATCATCTCTATATTTCTCATA 175 ||||||||||| ||||| || |||| ||||||||||||||||||||||||||||||||| Sbjct 117 TCTCATCACATCCTTCTCCTC-CCTCACGACGCCGTTTCATCATCTCTATATTTCTCATA 175 Query 176 TCTTTTGCCTCGATCCTCATCTACATCTTCTGGCCGTCCGATCCACGAATCAAGATCGTA 235 ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| || Sbjct 176 TCTTTTGCCTCGATCCTCATCTACATCTTCTGGCCGTCCGATCCACGCATCAAGATCATA 235 Query 236 CGGGTCAAGATTTCCCACGTGCACGTTCACCGCCGTCCGGTTCCGTCTATAGACATGACG 295 |||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 236 CGGGTCAAAATTTCCCACGTGCACGTTCACCGCCGTCCGGTGCCGTCTATAGACATGACG 295 Query 296 TTGCTCGTTACGCTTAAGGTATCAAATGCTGACGTGTACTCTTTTGACTTCACGGATCTT 355 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 296 TTGCTCGTTACGCTTAAGGTATCAAATGCTGACGTGTACTCTTTTGACTTCACGGATCTT 355 Query 356 GACGTCACGATTGACTATAGAGGGAAGACGTTAGGTCACGTGAGTTCTGATGGCGGGCAC 415 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 356 GACGTCACGATTGACTATAGAGGGAAGACGTTAGGTCACGTGAGTTCTGATGGCGGGCAC 415 Query 416 GTGACGGCTTTTGGTTCTTCTTACCTTGACGCGGAGGCTGAGCTAGAGGGCGTTACGGTG 475 |||||||||||||||||||||||||||||||||||||||||||| || ||||| | |||| Sbjct 416 GTGACGGCTTTTGGTTCTTCTTACCTTGACGCGGAGGCTGAGCTTGACGGCGTCATGGTG 475 Query 476 TTTCCTGACGTCATTCATTTGATTCACGATTTGGCTAAAGGCTCCGTTGAATTTGACACC 535 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 476 TTTCCTGACGTCATTCATTTGATTCACGATTTAGCTAAAGGCTCCGTTGAATTTGACACC 535 Query 536 GTTACGGAGACTAACGG-AAACCTTGGTGTTTGGTTCTTCCGTTTCCCTTTAAAGG 590 ||||||||||||||||| |||| |||| |||| ||||||||||||||||||||||| Sbjct 536 GTTACGGAGACTAACGGGAAAC-TTGGCGTTTTGTTCTTCCGTTTCCCTTTAAAGG 590 Score = 135 bits (73), Expect = 4e-31 Identities = 86/92 (93%), Gaps = 2/92 (2%) Strand=Plus/Plus Query 588 AGGCAAAAGTGGCATGTGGGATTCTAGTA-ATTACAGTTAATCAGACGATTTCTCGTCAA 646 ||||||||||||||||||||||||||||| | ||| ||||||||||| |||||||||||| Sbjct 745 AGGCAAAAGTGGCATGTGGGATTCTAGTAGA-TACTGTTAATCAGACAATTTCTCGTCAA 803 Query 647 AGTTGTAGTCCTCTCTAATTTAAGACACATCA 678 |||||||||||||||||||| |||| |||||| Sbjct 804 AGTTGTAGTCCTCTCTAATTCAAGAAACATCA 835 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 32802897991 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5