BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg474354
Length=1009
Score E
Sequences producing significant alignments: (Bits) Value
AT1G52340.1 | Symbols: ABA2, SIS4, GIN1, SDR1, ISI4, SRE1, ATAB... 1441 0.0
AT1G52330.2 | Symbols: | Late embryogenesis abundant (LEA) hyd... 54.7 2e-06
> AT1G52340.1 | Symbols: ABA2, SIS4, GIN1, SDR1, ISI4, SRE1, ATABA2,
ATSDR1 | NAD(P)-binding Rossmann-fold superfamily protein
| chr1:19489794-19491648 REVERSE LENGTH=1182
Length=1182
Score = 1441 bits (780), Expect = 0.0
Identities = 921/988 (93%), Gaps = 13/988 (1%)
Strand=Plus/Plus
Query 29 GAG-TAAAGCTAATATGTCAACGAACACTCCATCTTCTTC---TTCTGCTCTTCCTACTT 84
||| |||||||| |||||||||||||||| ||||||||| |||| |||||||||
Sbjct 108 GAGCTAAAGCTATTATGTCAACGAACACTGAATCTTCTTCTTATTCTTCTCTTCCTA--- 164
Query 85 GTGACAGGCTTTTGGGTAAAGTGGCATTGATTACTGGAGGAGCCACTGGGATAGGTGAGA 144
|| | |||||||||||||||||||||||||| |||||||||||||| |||||||||||||
Sbjct 165 GTCAAAGGCTTTTGGGTAAAGTGGCATTGATCACTGGAGGAGCCACAGGGATAGGTGAGA 224
Query 145 GCATTTTTCGTCTATTCCACAAGCACGGTG-CAAATGTCTGCATTGTTGATTTGCAAGAT 203
||||| ||||||| |||||||||||||||| |||| ||||||||||||||| ||||||||
Sbjct 225 GCATTGTTCGTCTGTTCCACAAGCACGGTGCCAAA-GTCTGCATTGTTGATCTGCAAGAT 283
Query 204 GATCTCGGAAACGAGGTATGTAAAAGTCTGCTTAGTGGTGGGACGAAGGAGACGGCTTGT 263
||||||||| ||||| ||||||||||||||| |||||| | | ||||||||||||| |
Sbjct 284 GATCTCGGAGGTGAGGTGTGTAAAAGTCTGCTTCGTGGTGAGTCCAAGGAGACGGCTT-T 342
Query 264 TTT-ATCCATGGAGATGTTAGAGTGGAAGACGACATTAGCAATGCGGTTGACTTTGCAGT 322
||| |||||||| ||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 343 TTTCATCCATGGCGATGTTAGAGTGGAAGATGACATTAGCAATGCGGTTGACTTTGCAGT 402
Query 323 CAAAAAGTTTGGGACGCTTGATATACTTATCAACAATGCGGGATTATGCGGAGCACCGTG 382
|||||| |||||||||||||||||||||||||||||||| |||||||| |||||||||||
Sbjct 403 CAAAAATTTTGGGACGCTTGATATACTTATCAACAATGCAGGATTATGTGGAGCACCGTG 462
Query 383 CCCTGATATCCGCAACAATAGTTTGAGTGAGTTCGAGAAGATCTTTGATGTGAATGTGAA 442
||||||||| || || ||||||||||||||||||||| || ||||||||||||||||||
Sbjct 463 CCCTGATATTCGTAATTATAGTTTGAGTGAGTTCGAGATGACCTTTGATGTGAATGTGAA 522
Query 443 AGGAGCTTTTCTAAGCATGAAACATGCGGCTCGGGTAATGATACCGGAGAAGAAAGGGTC 502
||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct 523 AGGAGCTTTTCTAAGCATGAAACATGCAGCTCGTGTAATGATACCGGAGAAGAAAGGGTC 582
Query 503 GATAGTTTCCTTATGTAGTGTGGGAGGTGTTATGGGAGGCATTGGTCCACATGCTTATGT 562
||||||||||||||||||||||||||||||| |||||||| ||||||||||| |||||||
Sbjct 583 GATAGTTTCCTTATGTAGTGTGGGAGGTGTTGTGGGAGGCGTTGGTCCACATTCTTATGT 642
Query 563 CGGTTCCAAGCACGCTGTTCTAGGCTTGACTAGGAGTGTTGCAGCCGAGCTTGGACAGCA 622
||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 643 TGGTTCCAAGCATGCTGTTCTAGGCTTGACTAGGAGTGTTGCAGCGGAGCTTGGACAGCA 702
Query 623 CGGGATACGTGTGAACTGTGTTTCGCCTTACGCGGTTGCAACTAAACTCGCTTTGGCTCA 682
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 703 CGGGATACGTGTGAACTGTGTTTCGCCTTACGCGGTTGCAACTAAACTCGCTTTGGCTCA 762
Query 683 TTTGCCGGAGGAAGAAAGAACGGAAGATGCATTTGTGGGGTTCAGGAATTTTGCAGCTGC 742
|||||||||||||||||||||||| ||||||||||| || |||||||||||||| |||||
Sbjct 763 TTTGCCGGAGGAAGAAAGAACGGAGGATGCATTTGTTGGTTTCAGGAATTTTGCTGCTGC 822
Query 743 AAACGCGAATCTAAAAGGGGTCGAACTGACGGTTGATGATGTAGCGAACGCTGTTCTGTT 802
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 823 AAACGCGAATCTAAAAGGGGTGGAACTGACGGTTGATGATGTAGCGAACGCTGTTCTGTT 882
Query 803 TTTGGCAAGTGATGAATCGCGGTACATAAGCGGAGATAATCTGATGATTGATGGAGGATT 862
|||||| || ||||| |||||||||||||||||||||||| |||||||||||||||||||
Sbjct 883 TTTGGCTAGCGATGACTCGCGGTACATAAGCGGAGATAATTTGATGATTGATGGAGGATT 942
Query 863 CACTTGCACTAACCACTCCTTTAAAGTCTTCAGGTGATTCATTT-GCTAATGAATGTTGT 921
||||||||||||||||||||||||||||||||| |||| ||||| ||||| |||||||||
Sbjct 943 CACTTGCACTAACCACTCCTTTAAAGTCTTCAGATGATGCATTTTGCTAAAGAATGTTGT 1002
Query 922 TTAATGTTTAGTGTC-GTCAATTTATCATGTCTCTTAAATAATTTAACTGTGGAGCTTAT 980
|||||||||| |||| | ||||||||||||||| | ||||||||||||||||||||||||
Sbjct 1003 TTAATGTTTATTGTCCGCCAATTTATCATGTCTATCAAATAATTTAACTGTGGAGCTTAT 1062
Query 981 TGTGGTTTTAATTGTTACTTTTAGCATT 1008
||||||||||||||||||||||||||||
Sbjct 1063 TGTGGTTTTAATTGTTACTTTTAGCATT 1090
> AT1G52330.2 | Symbols: | Late embryogenesis abundant (LEA) hydroxyproline-rich
glycoprotein family | chr1:19488943-19489914
FORWARD LENGTH=972
Length=972
Score = 54.7 bits (29), Expect = 2e-06
Identities = 29/29 (100%), Gaps = 0/29 (0%)
Strand=Plus/Minus
Query 980 TTGTGGTTTTAATTGTTACTTTTAGCATT 1008
|||||||||||||||||||||||||||||
Sbjct 972 TTGTGGTTTTAATTGTTACTTTTAGCATT 944
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49430400648
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5