BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg474366
Length=2527
Score E
Sequences producing significant alignments: (Bits) Value
AT1G52410.2 | Symbols: TSA1 | TSK-associating protein 1 | chr1:... 3664 0.0
AT3G15950.1 | Symbols: NAI2 | DNA topoisomerase-related | chr3:... 211 2e-53
AT4G06748.1 | Symbols: | pseudogene, hypothetical protein | ch... 97.1 7e-19
> AT1G52410.2 | Symbols: TSA1 | TSK-associating protein 1 | chr1:19520728-19525624
FORWARD LENGTH=2577
Length=2577
Score = 3664 bits (1984), Expect = 0.0
Identities = 2350/2521 (93%), Gaps = 47/2521 (2%)
Strand=Plus/Plus
Query 1 CTCGTTCTTGTAATGGAAATCTCCGCCATGAAAACGAATTTTCTTGTACTGGCTTTGTCT 60
|||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||
Sbjct 23 CTCGTTCTTGTAATGGAAATCTACACCATGAAAACGAATTTTCTTGTACTGGCTTTGTCT 82
Query 61 CTGTGTCTTCTTCTTTCAAGCTTCCATGAGGTTTCTTGTCAGGATGATGGTAGTGGTTTG 120
||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 83 TTGTGTATCCTTCTTTCAAGCTTCCATGAGGTTTCTTGTCAGGATGATGGTAGTGGTTTG 142
Query 121 AGTAATTTTGATCTAATAGAACGTGACTATCAAGATAGTGTCAATGCTCTTCAAGGCAAG 180
|||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 143 AGTAATTTGGATCTAATAGAACGTGATTATCAAGATAGTGTCAATGCTCTTCAAGGCAAG 202
Query 181 GAAGATGAAGATCAGTCTGCAAAGATACAGAGTGACAACCAGAATAACACTACAGTGAGT 240
|| |||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
Sbjct 203 GACGATGAAGATCAGTCTGCAAAGATACAGAGTGAAAACCAGAATAACACTACAGTGACT 262
Query 241 GATAAGAACACTATTTCTCTGTCTCTATCAGATGAAACTGAGGTTGGATCTGTTAGTGAT 300
|||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||
Sbjct 263 GATAAGAACACTATTTCTCTATCTCTATCAGATGAATCTGAGGTTGGATCTGTTAGTGAT 322
Query 301 GAAAGTGTTAAACATTCGAGTCTGTTGGATCAAATCGAACTTGAATTCGAAGCTCATCAC 360
||||| ||| || |||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 323 GAAAGCGTTGGACGTTCGAGTCTGTTGGATCAAATCAAACTTGAATTCGAAGCTCATCAC 382
Query 361 AATAGCCTTAACCAAGCTGGATCTGATGGTGTCAAAGCTGAATCCAA-G--GATGATGAA 417
||||| |||||||||||||||||||||||||||| ||||||||||| | |||||||||
Sbjct 383 AATAGTATTAACCAAGCTGGATCTGATGGTGTCAAGGCTGAATCCAAGGATGATGATGAA 442
Query 418 GAATTATCTGCTCATAGACAGAAAATGTTGGAAGAAATCGAACGCGAATTTGAAGCTGCT 477
||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct 443 GAATTATCTGCTCATAGACAGAAAATGTTGGAAGAAATCGAACATGAGTTTGAAGCTGCT 502
Query 478 TCAAG-TAGTCTGAAACAACTAAAGACTGATGAAATAAACGAAGGAAATGATGAAGAACA 536
|| || ||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 503 TC-AGATAGTCTGAAACAACTAAAGACTGATGATGTAAACGAAGGAAATGATGAAGAACA 561
Query 537 ATCTGCAAAGAGGCAAAGTTTGTTGGAAGAGATCGAACGCGAGTTCGAAGCTGCTACAAA 596
|||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct 562 TTCTGCAAAGAGGCAAAGTTTGTTGGAAGAGATCGAACGTGAGTTTGAAGCTGCTACAAA 621
Query 597 AGAGCTTGAACAACTAAAGGTTAATGACTTCACCGGTGAAAAAGATGACGAAGAACAATC 656
||| |||||||||||||||||||||||||||||||| || ||||||||||||||||| ||
Sbjct 622 AGAACTTGAACAACTAAAGGTTAATGACTTCACCGGGGACAAAGATGACGAAGAACACTC 681
Query 657 TGCAAAGAGAAAAAGTATGCTTGAAGCTATTGAACGCGAGTTTGAAGCTGCTATGGAAGG 716
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 682 TGCAAAGAGAAAAAGTATGCTTGAAGCTATTGAACGCGAGTTTGAAGCTGCTATGGAAGG 741
Query 717 CATTGAAGAACTAAAGGTTTCTGATTCTACCGGAAGTGGAGATGATGAAGAACAATCTGC 776
|||||||| ||| |||||||||||||| || ||||| |||||||||||||||||||||||
Sbjct 742 CATTGAAGCACTTAAGGTTTCTGATTCCACAGGAAGCGGAGATGATGAAGAACAATCTGC 801
Query 777 AAAGAGACTAAGTATGCTTGAAGAGATCGAACGGGAATTTGAAGCTGCTACAAAGGGTCT 836
||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||
Sbjct 802 AAAGAGACTAAGTATGCTTGAAGAGATCGAACGGGAATTTGAAGCTGCTTCAAAAGGTCT 861
Query 837 TGAACAACTAAAGGCTGGCGATTCAACCGGGGACAAAAACGAAGAAGAACAAGCTGCAAA 896
||||||||||| |||| |||||||||||| |||||| |||||||||||||| ||||||||
Sbjct 862 TGAACAACTAAGGGCTAGCGATTCAACCGCGGACAATAACGAAGAAGAACACGCTGCAAA 921
Query 897 GGGACAAAGTTTGTTAGAAGAGATCGAACGAGAGTTCGAAGCTGCTACAGAGAGCCTTAA 956
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 922 GGGACAAAGTTTGTTAGAAGAGATCGAACGAGAGTTCGAAGCTGCTACAGAGAGCCTTAA 981
Query 957 GCTACTTCAAGTTGATGATTCTACTGAAGACACAG-A-AC---A-ATCTGCAAAGAGGCA 1010
|| ||||||||||||||||||||||||||||| || | || | | |||||||||||||
Sbjct 982 GCAACTTCAAGTTGATGATTCTACTGAAGACAAAGAACACTTTACAGCTGCAAAGAGGCA 1041
Query 1011 AAGTATGCTGGAAGAGATTGAACGTGAATTTGAAGCTGCAACAAAAGATCTTAAACAACT 1070
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1042 AAGTCTGCTGGAAGAGATTGAACGTGAATTTGAAGCTGCAACAAAAGATCTTAAACAACT 1101
Query 1071 AAATGATTTCACTGAAGGCAATGCTGATGATGAACACTCTGCAAAGAGAAACAAAATGTT 1130
|||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||
Sbjct 1102 AAATGATTTCACTGAAGGCAGTGCTGATGATGAACAATCTGCAAAGAGAAACAAAATGTT 1161
Query 1131 GGAAGAAATCGAACGCGAATTTGAAGCTGCTACAAAAGGTCTTGAACAACTAAAGGCTAA 1190
|||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1162 GGAAGATATCGAACGCGAATTTGAAGCTGCTACAATAGGTCTTGAACAACTAAAGGCTAA 1221
Query 1191 TGATTTCACTGAAGGCAGTGACAATGAAGAACAATCTGCACAA-AGAAAGAGTATGCTTG 1249
||||||| ||||||||| | | |||||||||||||||||| || ||||||||||||||||
Sbjct 1222 TGATTTCTCTGAAGGCAATAATAATGAAGAACAATCTGCA-AAGAGAAAGAGTATGCTTG 1280
Query 1250 AAGAGATTGAACGCGAGTTTGAAGCTGCTATTGGAGGTCTTAAACAGATAAAAGTTGATG 1309
||||||| ||||||||||| ||||||||||||||||||||||||||||| ||||||||||
Sbjct 1281 AAGAGATCGAACGCGAGTTCGAAGCTGCTATTGGAGGTCTTAAACAGATCAAAGTTGATG 1340
Query 1310 ATTCCAGAAA-CATCGAAGAAGAATCTGCTAAGAGAAAGATAATGTTGGAAGAGATGGAA 1368
|||||||||| | | ||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1341 ATTCCAGAAATCTT-GAAGAAGAATCTGCTAAGAGAAAGATAATTTTGGAAGAGATGGAA 1399
Query 1369 CGCGAATTTGAAGAAGCACACAGTGGCATTAATGGAAAGGCTGACACAGAAGAATCTGCA 1428
|| ||||||||||||||||||||||| ||||||| ||||||||||| |||||||||||||
Sbjct 1400 CGTGAATTTGAAGAAGCACACAGTGGTATTAATGCAAAGGCTGACAAAGAAGAATCTGCA 1459
Query 1429 AAGAAACAGAGTGACTATGCTACACCAGAGGTTCTTGGACTTGGAAAGCCAGATGTTTGT 1488
||||||||||||| || ||||| |||||||||||||||||| ||| || ||| || ||||
Sbjct 1460 AAGAAACAGAGTGGCTCTGCTATACCAGAGGTTCTTGGACTAGGACAGTCAGGTGGTTGT 1519
Query 1489 AGCTGTTTTAACCAAGACAATGCTGGTTCAAAACACGACGATGATGCTTCGATTGTTATA 1548
||||||| ||| |||||| | || || | | || |||||||||||
Sbjct 1520 AGCTGTTCTAAACAAGAC---G-------AA-----GA---T--TCCT-CGATTGTTATA 1558
Query 1549 CCGACTAAATATAGCATAGAAGAGATCCTATCTGAAGAATCTGCAGTCCAGGGAACAGAG 1608
|| || ||||||||||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 1559 CCAACAAAATATAGCATAGAAGATATCCTCTCTGAAGAATCTGCAGTCCAGGGAACAGAG 1618
Query 1609 ACTTCTAGTCTCACAGCGTCTTTGACTCAACTCGTTGAGAATCACCGGAAAGAAAAGGAA 1668
|||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1619 ACTTCTAGTCTCACCGCGTCTTTGACTCAACTCGTTGAGAATCACAGGAAAGAAAAGGAA 1678
Query 1669 TCTCCACTGGGACACAGAGTTCTCActtcttcttcttcttcttctgcttcttcCACAAGC 1728
|||| ||| ||||||||||||||||||||| | ||||| | |||||||||||||||
Sbjct 1679 TCTCTACTCGGACACAGAGTTCTCACTTCT-C--CTTCTA-TA--GCTTCTTCCACAAGC 1732
Query 1729 GAATCATCTGCTACATCAGAGACTGTAGAAACCCTAAGGGCTAAACTGAAAGAGCTTCGC 1788
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1733 GAATCATCTGCTACATCAGAGACTGTAGAAACCCTAAGGGCTAAACTGAATGAGCTTCGC 1792
Query 1789 GGCTTAACCGCTCGTGAGCTTGTGACACGTCAAGATTTCGATCAGATTCTCATTACGGCT 1848
|||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||
Sbjct 1793 GGCTTAACCGCTCGTGAGCTTGTGACACGTAAAGATTTCGGTCAGATTCTCATTACGGCT 1852
Query 1849 GCGAGTTTCGAAGAGCTAAGCTCAGCTCCAATCAGTTACATCTCTAGGTTAGCTAAATAC 1908
|||||||| ||||||||||| |||||||||||||||||||| ||||||||||||||||||
Sbjct 1853 GCGAGTTTTGAAGAGCTAAGTTCAGCTCCAATCAGTTACATTTCTAGGTTAGCTAAATAC 1912
Query 1909 AGAAACGTCATCAAAGAAGGACTTGAAGCTTCTGAGCGAGTTCACATCGCACAGGCACGA 1968
|||||||||||||||||||||||||||||||||||| ||||||||||||| |||| ||||
Sbjct 1913 AGAAACGTCATCAAAGAAGGACTTGAAGCTTCTGAGAGAGTTCACATCGCGCAGGTACGA 1972
Query 1969 GCGACAATGCTCAAAGAAGTTGCCACGGAGAAGCAAACCTCCGTGGACTCCCATTTTGCA 2028
|| | |||||||||||||||||||||||||||||||||| |||||||| | ||||| |||
Sbjct 1973 GCAAAAATGCTCAAAGAAGTTGCCACGGAGAAGCAAACCGCCGTGGACACTCATTTCGCA 2032
Query 2029 ACCGCTAAAACGCTTGCTCAAAAAGGAGATGCGTTGTTCGTTAGAATCTTTGCGATCAAG 2088
|||||||||| |||||||||| ||||||| ||||||||||||| |||||| || ||||||
Sbjct 2033 ACCGCTAAAAAGCTTGCTCAAGAAGGAGACGCGTTGTTCGTTAAAATCTTCGCAATCAAG 2092
Query 2089 AAACTGTTGGCGAAG-TTAGAAGCAGAGAAAGAATCTATTGATGCAAAGTTTAAGGAGAC 2147
|||||||||||||| || |||||||||||||||||| |||||| |||||||||||||||
Sbjct 2093 AAACTGTTGGCGAAACTT-GAAGCAGAGAAAGAATCTGTTGATGGAAAGTTTAAGGAGAC 2151
Query 2148 TGTGAAAGAACTTTCTCATTTTCTTGTTGATGCTTCTGAGGCTTACGAAGAGTATCATGG 2207
||||||||||||||||||| |||| | |||||||||||||||||||||||||||||||||
Sbjct 2152 TGTGAAAGAACTTTCTCATCTTCTGGCTGATGCTTCTGAGGCTTACGAAGAGTATCATGG 2211
Query 2208 CGCGGTGAGGAAGGCGAAAGACGAGCAAGCGGCTGAGGAATTTGCGAAAGAGGCGACACA 2267
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 2212 CGCGGTGAGGAAGGCGAAAGACGAGCAAGCGGCTGAGGAATTTGCGAAAGAGGCGACGCA 2271
Query 2268 AAGTGCAGAGATCATTTGGGTTAAGTTTCTTAGTTCTCTTTAGAGAGCAATTGAGATTCT 2327
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 2272 AAGTGCAGAGATCATTTGGGTTAAGTTTCTTAGTTCTCTTTAGAGAACAATTGAGATTCT 2331
Query 2328 TGGTTGTGTTAAGAGCAAATCTAGAGCTCTTGTTGGTTCTTGTTATGTATTTTGTGATGA 2387
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2332 TGGTTGTGTTAAGAGCAAATCTAGAGCTCTTGTTGGTTCTTGTTATGTATTTTGTGATGA 2391
Query 2388 TGTTCTGTTTCAGAGTCTGTGTGTTGGTTATATCAGgagagagaagttgagagatagaga 2447
|||||||||||||||| |||||||||||| |||||||||| ||| | || ||||||||||
Sbjct 2392 TGTTCTGTTTCAGAGTTTGTGTGTTGGTTGTATCAGGAGAAAGAGGCTGGGAGATAGAGA 2451
Query 2448 ggaagagagTCTCTGTGAAAACTAATAATGTTTTTTCAGATTTCTACTAATAA-AAGCTT 2506
| ||||||||||||| ||||||||||||||||||||||||| |||| ||||| ||||||
Sbjct 2452 GAAAGAGAGTCTCTGCGAAAACTAATAATGTTTTTTCAGATATCTA--AATAATAAGCTT 2509
Query 2507 T 2507
|
Sbjct 2510 T 2510
Score = 161 bits (87), Expect = 3e-38
Identities = 158/190 (83%), Gaps = 13/190 (7%)
Strand=Plus/Plus
Query 411 TGATGAAGAATTATCTGCTCATAGACAGAAAATGTTGGAAGAAATCGAACGCGAATTTGA 470
|||||| ||| |||||| | ||| | |||||||||||||| |||||||||||||||||
Sbjct 1126 TGATGATGAACAATCTGCAAAGAGAAACAAAATGTTGGAAGATATCGAACGCGAATTTGA 1185
Query 471 AGCTGCTTCAAGTA-GTC-TGAAACAACTAAAGACTGATGAAATAAAC-GAAGG--A-AA 524
||||||| ||| || ||| || ||||||||||| || ||| | | | ||||| | ||
Sbjct 1186 AGCTGCTACAA-TAGGTCTTG-AACAACTAAAGGCTAATG-ATTTCTCTGAAGGCAATAA 1242
Query 525 TGATGAAGAACAATCTGCAAAGAGGCAA-AGTTTG-TTGGAAGAGATCGAACGCGAGTTC 582
| ||||||||||||||||||||| | || ||| || || |||||||||||||||||||||
Sbjct 1243 TAATGAAGAACAATCTGCAAAGA-GAAAGAGTATGCTT-GAAGAGATCGAACGCGAGTTC 1300
Query 583 GAAGCTGCTA 592
||||||||||
Sbjct 1301 GAAGCTGCTA 1310
> AT3G15950.1 | Symbols: NAI2 | DNA topoisomerase-related | chr3:5397569-5402652
REVERSE LENGTH=2575
Length=2575
Score = 211 bits (114), Expect = 2e-53
Identities = 239/298 (80%), Gaps = 14/298 (5%)
Strand=Plus/Plus
Query 442 ATGTTGGAAGAAATCGAACGCGAATTTGAAGCTGCTTCAAGTAGTCTGAAACAACTAAAG 501
|||||||| || || ||||| ||||||||||||||| ||| |||||| || ||||||||
Sbjct 1069 ATGTTGGATGAGATTGAACGTGAATTTGAAGCTGCTACAAATAGTCTTAAGCAACTAAA- 1127
Query 502 AC-TGATGAAATAAACGAAGGAAATGATGA-AGAACAATCTGCAAAGAGGCAA-AGTTTG 558
| ||| || | | |||||| |||| | | | ||||||||| || | || ||| ||
Sbjct 1128 CCTTGACGATTTCAGTGAAGGAGATGA-CAGTGCAGAATCTGCAAGGA-GAAATAGTATG 1185
Query 559 -TTGGAAGAGATCGAACGCGAGTTCGAAGCTGCTACAAAAGAG-CTTGAACAACTAAAGG 616
|| |||| |||||||||||||| |||||||||||||||| | |||||| | |||||||
Sbjct 1186 CTT-GAAGCTATCGAACGCGAGTTTGAAGCTGCTACAAAAG-GTCTTGAAGAGCTAAAGG 1243
Query 617 TTAATGACTTC-ACCGGTGAAAAAGATGACGAAGAACA-ATCTGCAAAGAGAAAAAGTAT 674
|||||| ||| ||||| || || ||||| || ||||| | ||||| |||||||| |||
Sbjct 1244 CTAATGA-TTCAACCGGCGACAAGGATGATGATGAACACGT-TGCAAGGAGAAAAATTAT 1301
Query 675 GCTTGAAGCTATTGAACGCGAGTTTGAAGCTGCTATGGAAGGCATTGAAGAACTAAAG 732
|||||||||||||||||||||||||||||| || | ||||| ||||||| |||||
Sbjct 1302 GCTTGAAGCTATTGAACGCGAGTTTGAAGCCGCGACAAAAGGCCTTGAAGAGTTAAAG 1359
Score = 158 bits (85), Expect = 3e-37
Identities = 497/682 (73%), Gaps = 84/682 (12%)
Strand=Plus/Plus
Query 524 ATGATGAAGAACAATCTGCAAAGAGGCA-AAGTTTGTTGGAAGAGATCGAACGCGAGTTC 582
||||||||| ||||||||||||||| || || | || | || ||||||||||| |||||
Sbjct 800 ATGATGAAGCACAATCTGCAAAGAGACAGAA-TATGCTAGATGAGATCGAACGGGAGTTT 858
Query 583 GAAGCTGCTACAAAAGAG-CTTGAACAACTAAAGGTTAATGACTTCAC-CGGTGAAA-A- 638
||||||||||||| | | ||| || | |||||| |||||| | |||| | || ||| |
Sbjct 859 GAAGCTGCTACAAGTG-GTCTTAAAGAGCTAAAGATTAATG-C-TCACACTGTCAAAGAT 915
Query 639 -A----GATGACGAAGAACAATCTG-CAAAGAGAAAAAGTATGCTTGAAGCTATTGAACG 692
| ||||| |||||||| || |||| ||| |||||||||| || || ||||||||
Sbjct 916 GATGTTGATGATAAAGAACAAGATGCCAAA-AGACAAAGTATGCTAGATGCAATTGAACG 974
Query 693 CGAGTTTGAAGCTGCTATGGAAG-GCATTGAAGAAC-TAAAGGTTTCTGATTCTACCGGA 750
||||||||||| | || | || | || || ||| | ||| | || | || | |
Sbjct 975 TGAGTTTGAAGCCGTTACCG-AGAGTTTTAAACAACTTGAAGATATC-GCCGATAAC-AA 1031
Query 751 AG-TGGAGATGATGAAGAAC-AATCTGCAAAGAGACTAAGTATGCTT-GAAGAGATCGAA 807
|| | || | || || | || ||||||||||||| | ||||||| || || ||||| |||
Sbjct 1032 AGCT-GA-AGGA-GACG-ACGAATCTGCAAAGAGGCAAAGTATG-TTGGATGAGATTGAA 1086
Query 808 CGGGAATTTGAAGCTGCTACAAAGGGTCTTGAA-CAACTAAAGGC-TGGCGA-TTCAACC 864
|| |||||||||||||||||||| ||||| || |||||||| | || ||| ||| |
Sbjct 1087 CGTGAATTTGAAGCTGCTACAAATAGTCTT-AAGCAACTAAA-CCTTGACGATTTC-A-- 1141
Query 865 GGGGACA-AAAACGA-AGAAGAACAAGCTGCAAAGG-GACAA-AGTTTG-TTAGAAGAGA 919
| || | | | || || | | || |||| |||| || || ||| || || |||| |
Sbjct 1142 -GTGA-AGGAGATGACAG-TGCAGAATCTGC-AAGGAGA-AATAGTATGCTT-GAAGCTA 1195
Query 920 TCGAACGAGAGTTCGAAGCTGCTAC-AGAGAGCCTT-AAGCTA-CTTCAA-GTTGATGAT 975
||||||| ||||| ||||||||||| | || | ||| ||| | | | || | | |||||
Sbjct 1196 TCGAACGCGAGTTTGAAGCTGCTACAAAAG-GTCTTGAAG--AGC-TAAAGGCTAATGAT 1251
Query 976 TCTA-C--TG--AA-GA-CA-CA-GAACA-ATCTGCAAAGAGGCAAAGTATGCTGGAAGA 1025
|| | | | || || | | ||||| | ||||| ||| ||| |||||| ||||
Sbjct 1252 TCAACCGGCGACAAGGATGATGATGAACACGT-TGCAAGGAGAAAAATTATGCTTGAAGC 1310
Query 1026 GATTGAACGTGAATTTGAAGCTGCAACAAAAGATCTTAAACAACTAAATGATTTCA-CTG 1084
|||||||| || |||||||| || ||||||| ||| || | |||| || | | | |
Sbjct 1311 TATTGAACGCGAGTTTGAAGCCGCGACAAAAGGCCTTGAAGAGTTAAA-GAATGAATCAG 1369
Query 1085 AAGGCAATGCTGATGATGAACACTCTGCAAAGAGAAACAAAATGTTGGAAGAAATCGAAC 1144
|| ||| || ||| || | | |||||||||| |||||||||| | ||||||
Sbjct 1370 AA--CAA-GC---TGA--AA-A-----C-AAGAGAAACAGTATGTTGGAAGCATTCGAAC 1414
Query 1145 GCGAATTTGAAGCTGCTACAAA 1166
||||||||||||||||||||||
Sbjct 1415 GCGAATTTGAAGCTGCTACAAA 1436
> AT4G06748.1 | Symbols: | pseudogene, hypothetical protein |
chr4:4077798-4079408 FORWARD LENGTH=1611
Length=1611
Score = 97.1 bits (52), Expect = 7e-19
Identities = 73/83 (88%), Gaps = 2/83 (2%)
Strand=Plus/Plus
Query 281 AGGTTGGATCTGTTAGTGATGAA-AGTGTTAAACATTCGAGTCTGTTGGATCAAATCGAA 339
|||| |||||||||||||||||| | |||||||||||| | |||||||||||||||||
Sbjct 692 AGGTCGGATCTGTTAGTGATGAATTTTATTAAACATTCGACTTTGTTGGATCAAATCGAA 751
Query 340 CTTGAATTCGAAGCTCATCACAA 362
||||||||||||| | ||| |||
Sbjct 752 CTTGAATTCGAAGGT-ATCTCAA 773
Score = 78.7 bits (42), Expect = 3e-13
Identities = 52/57 (91%), Gaps = 0/57 (0%)
Strand=Plus/Plus
Query 585 AGCTGCTACAAAAGAGCTTGAACAACTAAAGGTTAATGACTTCACCGGTGAAAAAGA 641
||| |||||| ||||||| ||||||||||||||||||||||||||||| || |||||
Sbjct 1539 AGCCGCTACACAAGAGCTCGAACAACTAAAGGTTAATGACTTCACCGGGGACAAAGA 1595
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 125417357500
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5