BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg474375
Length=1471
Score E
Sequences producing significant alignments: (Bits) Value
AT1G52510.1 | Symbols: | alpha/beta-Hydrolases superfamily pro... 2281 0.0
AT1G52500.2 | Symbols: FPG-1, ATFPG-1, ATMMH-1, MMH-1 | MUTM ho... 137 2e-31
> AT1G52510.1 | Symbols: | alpha/beta-Hydrolases superfamily protein
| chr1:19561510-19565272 REVERSE LENGTH=1470
Length=1470
Score = 2281 bits (1235), Expect = 0.0
Identities = 1396/1473 (95%), Gaps = 13/1473 (1%)
Strand=Plus/Plus
Query 1 AAAAATGtctctgctctctcctcttcctctgctccactcattctcctccACCGTCGCCAC 60
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 9 AAAAATGTCTTTGCTCTCTCCTCTTCCTCTGCTCCACTCATTCTCCTCCACCGTCGCCAC 68
Query 61 AAAATCCACCGCCTCTAGAATCACTGCCTCTCCGTCGAAACTCCGCTTCTCCGTCGTCAA 120
|||||||||||||||||||||||||||| | ||||||||| |||||||||| ||| | ||
Sbjct 69 AAAATCCACCGCCTCTAGAATCACTGCCACGCCGTCGAAAATCCGCTTCTCTGTCATAAA 128
Query 121 CGCGACGCCGGAGAATGGAAACAGCGGTGGTCGTAAAAAAGATCGTGATGAGGATCCTTC 180
||| ||| ||||||||||||||||||||||| ||||||| ||||||||||||||||| ||
Sbjct 129 CGCCACGTCGGAGAATGGAAACAGCGGTGGTAGTAAAAACGATCGTGATGAGGATCCATC 188
Query 181 TTTTAACCCATTTGGTTTCGTTACAGATAATCCGTCTAGCCGGAGTGCAATTCAGTTACC 240
||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||
Sbjct 189 TTTTAACCCATTTGGTTTCGTTACAGACAACCCGTCTAGCCGGAGTGCAATTCAGTTACC 248
Query 241 GGAGTCTCCGGCTGAAGACGGTAACGTCGGTCAAATGCTCTACAGGACTGAAGATAAAGG 300
||||||||||| |||||||| || ||||| |||||||||||||||||||||||||||||
Sbjct 249 AGAGTCTCCGGCGGAAGACGGCAATGTCGGCCAAATGCTCTACAGGACTGAAGATAAAGG 308
Query 301 TAAAGAGTATGGTTCAACTATCAAATCTGGGAAGCTTAGATGGTTTGTGAGAGAGACTGG 360
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 309 TAAAGAGTATGGCTCAACTATCAAATCTGGGAAGCTTAGATGGTTTGTGAGAGAGACTGG 368
Query 361 GTCAAAGGAGAGTCGGCGAGGAACCATTGTTTTTGTTCATGGAGCTCCTACTCAGTCTTT 420
|||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||
Sbjct 369 ATCAAAGGAGAGTCGTCGAGGAACCATTGTATTTGTTCATGGAGCTCCTACTCAGTCTTT 428
Query 421 TAGTTACCGGACCGTTATGTCTGAGATGTCAGATGCTGGATTTCATTGCTTTGCACCTGA 480
||| ||| | || || ||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 429 TAGCTACAGAACTGTCATGTCTGAGTTGTCAGATGCTGGATTTCATTGCTTTGCACCTGA 488
Query 481 CTGGATAGGTTTCGGATTCAGTGACAAGCCGCAGCCGGGATACGGTTTTAATTACACAGA 540
||||||||| ||||||||||||||||| |||||||| |||||||||||||||||||||||
Sbjct 489 CTGGATAGGATTCGGATTCAGTGACAAACCGCAGCCTGGATACGGTTTTAATTACACAGA 548
Query 541 AAAAGAGTACCATGAGGCATTTGATAAACTGCTGGAAGTGCTAGAGGTCAAATCTCCTTT 600
|||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct 549 AAAAGAGTACCATGAGGCGTTTGATAAACTGCTTGAAGTGCTAGAGGTCAAATCTCCTTT 608
Query 601 CTTTCTTGTTGTTCAGGGATTTCTTGTAGGTTCATATGGTTTAACTTGGGCTTTGAAAAA 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 609 CTTTCTTGTTGTTCAGGGATTTCTTGTAGGTTCATATGGTTTAACTTGGGCTTTGAAAAA 668
Query 661 TCCAAGCAAAGTTGAGAAAATCGCGATCCTTAATAGTCCACTGACCGTTTCATCCCCAGT 720
||||||||| ||||||||| ||||||||||||||||||| ||||||||||||||||||||
Sbjct 669 TCCAAGCAAGGTTGAGAAACTCGCGATCCTTAATAGTCCGCTGACCGTTTCATCCCCAGT 728
Query 721 TCCCGGATTATTTAAGCAACTGAGGATTCCCCTGTTTGGTGAATTCACCTGCCAAAATGC 780
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 729 TCCCGGATTATTTAAGCAGCTGAGGATTCCCCTGTTTGGTGAATTCACCTGCCAAAATGC 788
Query 781 TATCTTGGCCGAGCGGTTCATTGAAGGAGGTAGCCCCTACGTCCTGAAGAATGAGAAAGC 840
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 789 TATCTTGGCCGAGCGGTTCATTGAAGGAGGTAGCCCCTACGTCCTGAAGAATGAGAAAGC 848
Query 841 TGATGTCTATCGTCTACCTTATTTGTCAAGCGGAGGACCTGGGTTTGCCTTGCTCGAGAC 900
|||||| ||||||||||| ||||||||||||||||| ||||| |||||||||||||||||
Sbjct 849 TGATGTGTATCGTCTACCATATTTGTCAAGCGGAGGGCCTGGCTTTGCCTTGCTCGAGAC 908
Query 901 TGCGAAAAAGATCAACTTTGGAGACACCTTGAGTCAAATTGCAAATGGGTTTTCATCGGG 960
|||||| |||||||||||||||||||| ||||||||||||||||||||||||||||| ||
Sbjct 909 TGCGAAGAAGATCAACTTTGGAGACACATTGAGTCAAATTGCAAATGGGTTTTCATCAGG 968
Query 961 CAACTGGGATAAACCTACGCTTCTGGCTTGGGGAATAGCTGATAAATATCTGCCTCAGTC 1020
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 969 CAGCTGGGATAAACCTACGCTTCTGGCTTGGGGAATAGCTGATAAATATCTGCCTCAGTC 1028
Query 1021 TATAGCAGAGGAGTTTGAGAAACAGAATCCCCAAAATGTCAAGCTTCGACTCATCGAAGG 1080
|||||||||||| |||||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct 1029 TATAGCAGAGGAATTTGAGAAACAGAACCCCCAAAATGTTAAGCTTCGACTCATCGAAGG 1088
Query 1081 TGCTGGGCATTTGCCTCAAGAAGACTGGCCGGAGAAAGTAGTTGCAGCCCTCCGAGCATT 1140
|||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||
Sbjct 1089 TGCTGGGCATTTGCCTCAAGAAGACTGGCCAGAGAAAGTAGTTGCTGCCCTCCGAGCATT 1148
Query 1141 TTTCTGACTTCCAAATTCACCAAACAAGGACAAAGGTAATGTTTTGGTGGGTT-TTTCAA 1199
|||||||||||||||| || |||| ||||||| ||||| |||||||||||| | ||| |
Sbjct 1149 TTTCTGACTTCCAAATACAACAAAAAAGGACAGAGGTACTGTTTTGGTGGGGTGTTT-A- 1206
Query 1200 GAATCTTACCTCTTTGATGGATGTGTGCAAAGCTTCACATTGCTCTTTGGAAAGGCTAGA 1259
|| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1207 GAGTCTTACCTCTTTGATGGATGTGTGCAAAGCTTCACATTGCTCTTTGGAGAGGCTAGA 1266
Query 1260 AGCAGACTGCAACGGGTGGATTCTGGCCTGCGAAAAACAA-AAACTAGTAGAATTAATCG 1318
||||| ||||||||||||||||||||||||||||||| || ||||||| | | |||||||
Sbjct 1267 AGCAGTCTGCAACGGGTGGATTCTGGCCTGCGAAAAA-AATAAACTAG-A-A-TTAATCG 1322
Query 1319 TACAGCATGTAAACCAGTTTCTTCTGTCGTCAAATGTACAGAGTTGAAAACAAAAGTGGA 1378
||||||||||||||| |||||||||||||||||||||||||| ||| ||||||||||
Sbjct 1323 TACAGCATGTAAACCCGTTTCTTCTGTCGTCAAATGTACAGA----AAA-CAAAAGTGGA 1377
Query 1379 TACTTTGTGAATCAAATGAGTGGTTACATAGATGCTTTACTTCATTTCAAGTGTAAGTGT 1438
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct 1378 TACTTTGTGAATCAAATGAGTGGTTACATAGATGCTTTACTTCATTTCAAATGTAAATGT 1437
Query 1439 GTAAAGCTCACTTACTTGGTACAGCACTTCATC 1471
|||||| ||||||||||||||||||||||||||
Sbjct 1438 GTAAAGATCACTTACTTGGTACAGCACTTCATC 1470
> AT1G52500.2 | Symbols: FPG-1, ATFPG-1, ATMMH-1, MMH-1 | MUTM
homolog-1 | chr1:19559983-19563113 FORWARD LENGTH=1491
Length=1491
Score = 137 bits (74), Expect = 2e-31
Identities = 78/80 (98%), Gaps = 0/80 (0%)
Strand=Plus/Minus
Query 1207 ACCTCTTTGATGGATGTGTGCAAAGCTTCACATTGCTCTTTGGAAAGGCTAGAAGCAGAC 1266
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
Sbjct 725 ACCTCTTTGATGGATGTGTGCAAAGCTTCACATTGCTCTTTGGAGAGGCTAGAAGCAGTC 666
Query 1267 TGCAACGGGTGGATTCTGGC 1286
||||||||||||||||||||
Sbjct 665 TGCAACGGGTGGATTCTGGC 646
Score = 104 bits (56), Expect = 2e-21
Identities = 68/74 (92%), Gaps = 0/74 (0%)
Strand=Plus/Minus
Query 1107 GGCCGGAGAAAGTAGTTGCAGCCCTCCGAGCATTTTTCTGACTTCCAAATTCACCAAACA 1166
|||| |||||||||||||| |||||||||||||||||||||||||||||| || |||| |
Sbjct 1457 GGCCAGAGAAAGTAGTTGCTGCCCTCCGAGCATTTTTCTGACTTCCAAATACAACAAAAA 1398
Query 1167 AGGACAAAGGTAAT 1180
|||||| |||||||
Sbjct 1397 AGGACAGAGGTAAT 1384
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 72539787525
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5