BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg474377
Length=1062
Score E
Sequences producing significant alignments: (Bits) Value
AT1G52530.1 | Symbols: | CONTAINS InterPro DOMAIN/s: Hus1-like... 1524 0.0
> AT1G52530.1 | Symbols: | CONTAINS InterPro DOMAIN/s: Hus1-like
protein (InterPro:IPR007150); Has 129 Blast hits to 128 proteins
in 49 species: Archae - 0; Bacteria - 0; Metazoa - 57;
Fungi - 10; Plants - 47; Viruses - 0; Other Eukaryotes -
15 (source: NCBI BLink). | chr1:19568588-19570058 FORWARD LENGTH=1216
Length=1216
Score = 1524 bits (825), Expect = 0.0
Identities = 927/977 (95%), Gaps = 4/977 (0%)
Strand=Plus/Plus
Query 65 GTGAAATGAAGTTCAAGGCGTTTCTTACTGAAAATGGTGTGAATCTTTTAGAGAAGAGGT 124
||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||
Sbjct 198 GTGAAATGAAGTTCAAGGCGTTTCTGACTGAAAATGGTGTGAATCTCTTAGAGAAGAGGT 257
Query 125 TTCTTCCAGCATTTGACAAAATGGGGAAGAATTGTCATCTTCTTCTCACTAAAGAACATT 184
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 258 TTCTTCCAGCGTTTGACAAAATGGGGAAGAATTGTCATCTTCTTCTCACTAAAGAACACT 317
Query 185 TGTTCTTCCTTCATAATCTTCTCAATGGTGATGGAGTTCAATGCATTGCTCAGTTTCGCA 244
|||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 318 TGTTCTTCCTCCATAACCTTCTCAATGGTGATGGAGTTCAATGCATTGCTCAGTTTCGCA 377
Query 245 AAGATGTTCTCTTTGATGATTACCGTATCTCGAGCCAGAACGAGGATCGTATCGCTTTCT 304
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 378 AAGATGTTCTCTTTGATGATTACCGTATCTCGAGCCAGAACGAGGACCGTATCGCTTTCT 437
Query 305 CCTTGGATGTTGCTCTTCTGTATCGAGCGGTAAAGAGCAGTGTTAGTATTTGTACTGAGT 364
|||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 438 CCTTAGATGTTGCTCTTCTGTATCGAGCGGTGAAGAGCAGTGTTAGTATTTGTACTGAGT 497
Query 365 TCAGTGGTGGTTTAGCTTCAAACCGATTGCAGATCAAACTTGTGAAGAAA-CTGCCTCCT 423
|||||||||| |||||||||||| || |||||||||| ||||| || ||| || ||||||
Sbjct 498 TCAGTGGTGGATTAGCTTCAAACAGACTGCAGATCAAGCTTGTCAA-AAAGCTCCCTCCT 556
Query 424 AACTGTACACAACCGATGCCGTTT-CTCACTTTTGAAACGAAAGGATACAAATCTGCAGT 482
|||||||||||||||||||| ||| ||||| |||||||||||||||||||| ||||||||
Sbjct 557 AACTGTACACAACCGATGCC-TTTCCTCACGTTTGAAACGAAAGGATACAAGTCTGCAGT 615
Query 483 TATACAAGATGTTCCGATTTCGAAACCGCTGTCTCGGTCCCAAGTTATTGAGCTGCAGAC 542
||| ||||||||||||||| |||||||| | |||||||| |||||||| |||||||||||
Sbjct 616 TATTCAAGATGTTCCGATTACGAAACCGTTATCTCGGTCTCAAGTTATCGAGCTGCAGAC 675
Query 543 TGCTCTTGACTCGGCTCAAGATCTGCCTCCGACTCTTGTTCAAGTTCAAGACCCGAATCA 602
||||||||||||||||||||| || ||||||||||||||||||||||||||| |||||||
Sbjct 676 TGCTCTTGACTCGGCTCAAGACCTTCCTCCGACTCTTGTTCAAGTTCAAGACTCGAATCA 735
Query 603 GTTACAGAACTTTGTGGATCATATGAGACATGTTGGGGATGTACTTAATGTTACGATAAG 662
||||||||||||||| |||||||||||||||||||| ||||| |||||||| ||||||||
Sbjct 736 GTTACAGAACTTTGTTGATCATATGAGACATGTTGGTGATGTTCTTAATGTCACGATAAG 795
Query 663 CAAGCATGGTGATTTGCAAGTGCAAATCTCGACGACTTTGATTAGGCTTGGTACTGAGTT 722
|||||| |||||| ||||||||||| |||| |||||||||||||||||||||| ||||||
Sbjct 796 CAAGCACGGTGATCTGCAAGTGCAAGTCTCAACGACTTTGATTAGGCTTGGTATTGAGTT 855
Query 723 CCAGAGGCTTTCGGTTATTGGCGAGAAATCTCAGGCTCCTGTTGAAGATAGGAACTTAAG 782
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 856 CCAGAGGCTTTCGGTTATTGGTGAGAAATCTCAGGCTCCTGTTGAAGATAGGAACTTAAG 915
Query 783 TGCTCAGGCTCGTTCAGAGAGAGCTATTGCTAGAGGAGATGCTCAGTCTGTGCAAGTGAG 842
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 916 TGCTCAGGCTCGTTCAGAGAGAGCTATTGCTAGAGGAGATGCTCAGTCTGTGCAAGTGAG 975
Query 843 TGTAAAACACTTTTCAAAGAGCCTTCAATGTCACTTAACCAAACCAAATTCTGCTTTCTA 902
||||||||| ||||||||||||||||||||||||||||| |||||| ||||| |||||||
Sbjct 976 TGTAAAACATTTTTCAAAGAGCCTTCAATGTCACTTAACTAAACCAGATTCTACTTTCTA 1035
Query 903 TGGGATTGCTCCTCAAGGTGCTTGTTTGACAGTGATCTTCCAGTTCATGGTTCCCGGGAC 962
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||
Sbjct 1036 TGGGATTGCTCCTCAAGGTGCTTGCTTGACAGTGATCTTCCAGTTCATGGTTCCCGGAAC 1095
Query 963 TCGTCAAACCGATAAATCAATCAGTTTGCATTGCCGTCTTCCCGTTCTGGACCCAGGATC 1022
|||||||||||||||||||||||||||||||||||| |||||||| || |||||||| ||
Sbjct 1096 TCGTCAAACCGATAAATCAATCAGTTTGCATTGCCGACTTCCCGTGCTTGACCCAGGGTC 1155
Query 1023 CAACTGAATCTTCATCA 1039
|||||||||||||||||
Sbjct 1156 CAACTGAATCTTCATCA 1172
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52007764620
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5