BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg474384
Length=973
Score E
Sequences producing significant alignments: (Bits) Value
AT1G52580.1 | Symbols: ATRBL5, RBL5 | RHOMBOID-like protein 5 |... 1526 0.0
> AT1G52580.1 | Symbols: ATRBL5, RBL5 | RHOMBOID-like protein 5
| chr1:19587637-19589052 FORWARD LENGTH=1024
Length=1024
Score = 1526 bits (826), Expect = 0.0
Identities = 904/942 (96%), Gaps = 4/942 (0%)
Strand=Plus/Plus
Query 1 ATGGGGAAGAGACCGCCGATTCCACCAGATATCGAACACGGCCCACCACCACCAGCGCGA 60
|||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||
Sbjct 1 ATGGGGAAGAGACCGCCGATTCCACCAGATATCGAAAACGGACCACCACCACCAGCGCGA 60
Query 61 CCACAGTTTCGCCCGCCTATTCCGGTGCCATGGGTTGCGTGGCTTGTGCCTCTCATTTTA 120
||||| ||||||||||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct 61 CCACATTTTCGCCCGCCCATTCCCGTGCCATGGGTTGCGTGGCTTGTGCCTCTCATTTTA 120
Query 121 GCAGCCAACTTCGTCACATTCGCTACCACCATGTATGTAAACGATTGTCCTGCAAGATCA 180
|||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct 121 GCAGCCAACTTCGTCACATTCGCTACCACCATGTATGTGAACGATTGCCCTGCAAGATCA 180
Query 181 GATGAGTGTCTCTTATTTGATGTCCTTGGTAGGCTCTCGTTTCAACCCATTAAGGAGAAT 240
||||||||||||||||||||||||||||| ||||| ||||||||||| ||||||||||||
Sbjct 181 GATGAGTGTCTCTTATTTGATGTCCTTGGAAGGCTTTCGTTTCAACCGATTAAGGAGAAT 240
Query 241 ATGCTACTCGGTCCTTCTATTCCCACGCTGAGAAAACTCGGAGCTCTCGAAAGGAGACTT 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 ATGCTACTCGGTCCTTCTATTCCCACGCTGAGAAAACTCGGAGCTCTCGAAAGGAGACTT 300
Query 301 GTAGAGGAAGGTGAGAGATGGCGTCTCATCTCTTGCATATGGCTTCACGGTGGTTTCCTT 360
|| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 301 GTGGAGGAAGGTGAGAGATGGCGTCTCATCTCTTGCATATGGCTTCATGGTGGTTTCCTT 360
Query 361 CACTTGATGGCTAACATGATCAGCCTCATGTGTATCGGAATGCGCCTTGAACAAGAATTT 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 CACTTGATGGCTAACATGATCAGCCTCATGTGTATCGGAATGCGCCTTGAACAAGAATTT 420
Query 421 GGATTCATGAGAATCGGAGCTTTGTATGTGATCTCCGGGCTTGGAGGAAGCCTGATGTCT 480
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 421 GGATTCATGAGAATCGGAGCTTTGTATGTGATCTCCGGGCTTGGAGGAAGCCTGGTGTCT 480
Query 481 TGCTTAACAGATTCCCAAGGAGAACGGGTATCAGTTGGAGCATCCGGTGCTTTGTTCGGA 540
||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||
Sbjct 481 TGCTTAACAGATTCCCAAGGAGAACGGGTATCAGTCGGAGCATCTGGTGCTTTGTTCGGA 540
Query 541 TTACTCGGTGCAATGCTCTCAGAGCTGATAACAAACTGGACAATCTATGAAAATAAGTGT 600
|||||||||||||||||||||||||| || |||||||||||||||||||||||||||||
Sbjct 541 TTACTCGGTGCAATGCTCTCAGAGCTCATCACAAACTGGACAATCTATGAAAATAAGTGC 600
Query 601 ACCGCACTTATGACATTAGTTCTGATCATTGTACTGAATCTAAGCGTCGGATTCTTACCA 660
|||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||
Sbjct 601 ACCGCACTTATGACATTAATCCTGATCATTGTACTGAATCTAAGCGTCGGATTCTTACCA 660
Query 661 CGTGTGGACAATTCTGCTCATTTTGGAGGATTCCTAGCCGGTTTCTTCCTTGGGTTCGTC 720
|||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||
Sbjct 661 CGTGTGGACAATTCTGCTCATTTTGGAGGATTCCTAGCTGGTTTCTTCCTCGGGTTCGTC 720
Query 721 CTTCTTCTCCGTCCGCAGTACGGATACGTGAGCCCTAAATACATTCCTCCTGGTTATGAT 780
||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||
Sbjct 721 CTTCTTCTCCGTCCGCAGTACGGATACGTGAACCCAAAATACATTCCTCCTGGTTATGAC 780
Query 781 ATGAAACACAAGAAATCAAAACACAAGTGTTATCAACACATCCT--GATGTATACATCTC 838
|||||||||||||||||||||||||||||||||||||||||| | ||| | ||||||||
Sbjct 781 ATGAAACACAAGAAATCAAAACACAAGTGTTATCAACACATCTTCAGAT-T-TACATCTC 838
Query 839 TAGCCGTCCTTCTTGTGGGATTCATTTCGGGATATACTAAGCTTCTCAGAGAACATACCA 898
|||| ||||||||| |||||||||| ||||||| ||||||||||| |||||||||||||
Sbjct 839 TAGCTATCCTTCTTGCGGGATTCATTGCGGGATACACTAAGCTTCTTAGAGAACATACCA 898
Query 899 TACAGAGCGTGCCACTCAGAGATTTCAATTAGCAGCTTGTAG 940
|||||||| ||||| |||||||||||||||||||||||||||
Sbjct 899 TACAGAGCATGCCATTCAGAGATTTCAATTAGCAGCTTGTAG 940
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47621971356
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5