BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg474385
Length=757
Score E
Sequences producing significant alignments: (Bits) Value
AT1G52590.1 | Symbols: | Putative thiol-disulphide oxidoreduct... 1011 0.0
> AT1G52590.1 | Symbols: | Putative thiol-disulphide oxidoreductase
DCC | chr1:19589009-19590273 REVERSE LENGTH=776
Length=776
Score = 1011 bits (547), Expect = 0.0
Identities = 694/762 (91%), Gaps = 22/762 (3%)
Strand=Plus/Plus
Query 1 GAAGCTTTGAGATGGCGATCCTTTTTCCGGCGAATTTCGGG-GTATTTACTGTTCCTTCG 59
||||||||||||||||||||||| ||||||||| ||||||| | ||| || || | |||
Sbjct 32 GAAGCTTTGAGATGGCGATCCTTATTCCGGCGAGTTTCGGGCG-ATTAACAATTACGTCG 90
Query 60 CGTGCGCAAGTTAGACTGAGAGTTTCTGCTTCTGCTAACCAACGCACTATTCGTCCCAAT 119
||||| ||||||||| ||||||||||||||||||||||||||||||||||||||| | ||
Sbjct 91 CGTGCACAAGTTAGAGTGAGAGTTTCTGCTTCTGCTAACCAACGCACTATTCGTCGCGAT 150
Query 120 TCAGGGGACTGGGTTAAGGAAACTTCAAGCTTTTTCGAAGAAGACAAGAGGCCGATCATG 179
|||| ||| ||||||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct 151 TCAGTGGATTGGGTTAAGGAAACTTCAAGCTTTTTCGAAGAAGATAAAAGGCCGATCATG 210
Query 180 TTGTTCGATGGTGTTTGCAATCTTTGTAATGGAGGTGTTAAATTTGTTAGAGACCATGAT 239
|||||||| |||||||| ||||| |||||||||||||| |||||||||||||||||||||
Sbjct 211 TTGTTCGACGGTGTTTGTAATCTCTGTAATGGAGGTGTGAAATTTGTTAGAGACCATGAT 270
Query 240 CGAAACAGGAGCATTAGGTTTGAAGCATTACAGAGCGAAGCGGGCAAGAAACTGTTAATG 299
|||||||||||||| |||||||||||||||||||| ||||||||||||||||||||| ||
Sbjct 271 CGAAACAGGAGCATAAGGTTTGAAGCATTACAGAGTGAAGCGGGCAAGAAACTGTTATTG 330
Query 300 CGATCAGGAAGAGCTCCTGACGATATATCGAGTGTCGTACTTGTGGAAAATGATAGGTCT 359
|| |||||||||||||||||||||||||||||||||||||| || ||||| |||||||||
Sbjct 331 CGGTCAGGAAGAGCTCCTGACGATATATCGAGTGTCGTACTAGTCGAAAACGATAGGTCT 390
Query 360 TACATAAAGTCAGAGGCGGTGTTGAAGATCATGAAATACATTGACTTACCATTTCCACAG 419
|||||||||||||| || || |||||||||||||||||||||||||||||||||||||||
Sbjct 391 TACATAAAGTCAGAAGCAGTTTTGAAGATCATGAAATACATTGACTTACCATTTCCACAG 450
Query 420 CTTGCGTTCTTCATT-CAGTTTGCGCCTCTGTTTGTGAGGGACTTTTTGTATGAAAATGT 478
|||||||||||| || |||||||| |||||||||||||| ||||||||||||||||||||
Sbjct 451 CTTGCGTTCTTC-TTGCAGTTTGCTCCTCTGTTTGTGAGAGACTTTTTGTATGAAAATGT 509
Query 479 TGCAAACAACCGATATGCAATGTTTGGTCGATCTGATTCATGTGAGATCTAAGAATACAT 538
||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 510 TGCAAACAATCGATATGCAATGTTTGGTCGATCTGATTCATGTGAGCTCTAAGAATACAT 569
Query 539 TATTGATTGTGATCCTACTTTGCCACaaaaaaaaaaCCCTAGATATGTAAAAAATGTTTC 598
|| | | | ||||||||||||||||||||||||| | ||||||||||| | |
Sbjct 570 -AT-G-T-G--ATCCTACTTTGCCACAAAAAAAAAAAC-TAGATATGTAA----T----C 614
Query 599 CTACAGTTTAATATACGCTTGTATACAGATGTGTAGATTACAACAGCCATTGAACAACAG 658
|||||| |||||||| |||| ||||||||||| ||| |||||||||||||| ||||| ||
Sbjct 615 CTACAGATTAATATAAGCTTTTATACAGATGTATAGTTTACAACAGCCATTAAACAATAG 674
Query 659 ATACATATGTAGTACTTTTCGAATCATGTACTTGTCAAATGTATAACCTTTCTGATGTTG 718
||||||||||| |||||||||||||||||||| ||||||||||||||||||| || ||||
Sbjct 675 ATACATATGTACTACTTTTCGAATCATGTACTCGTCAAATGTATAACCTTTCCGACGTTG 734
Query 719 ATATTTGTGTTA-A-ATATGGAAAAAC-CTTGGGATTGTGTG 757
|||||||||||| | ||||||||||| ||||||||||||||
Sbjct 735 ATATTTGTGTTATATATATGGAAAAAAACTTGGGATTGTGTG 776
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36771395604
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5