BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg474386
Length=727
Score E
Sequences producing significant alignments: (Bits) Value
AT1G52600.1 | Symbols: | Peptidase S24/S26A/S26B/S26C family p... 1110 0.0
AT3G15710.1 | Symbols: | Peptidase S24/S26A/S26B/S26C family p... 514 5e-145
> AT1G52600.1 | Symbols: | Peptidase S24/S26A/S26B/S26C family
protein | chr1:19590487-19592695 FORWARD LENGTH=877
Length=877
Score = 1110 bits (601), Expect = 0.0
Identities = 657/683 (96%), Gaps = 7/683 (1%)
Strand=Plus/Plus
Query 1 GTGCCTTAAAGCTGACCCTGAGAGAAA--C-TCTTCTTCACTGC-AACGCTTTTGAAACA 56
|||||||||||||||| |||||||||| | ||||||||||||| ||||||||||| |||
Sbjct 1 GTGCCTTAAAGCTGACTCTGAGAGAAACTCTTCTTCTTCACTGCAAACGCTTTTGAGACA 60
Query 57 AAGTTCGTCACTTCGATCTGAATTATAATACTTCG-GCGAGAATCTG-AATAATCGAAGG 114
|||||||||||||||||||||||||||| |||||| ||||||||| | ||||||||||||
Sbjct 61 AAGTTCGTCACTTCGATCTGAATTATAACACTTCGTGCGAGAATC-GAAATAATCGAAGG 119
Query 115 TTCAAGATGGGTTGGATCGGAGAAACTGTAGATTCTATCAAATCTATTCAGATCCGTCAG 174
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 120 TTCAAGATGGGTTGGATCGGAGAAACTGTAGATTCTATCAAATCTATTCAGATTCGTCAG 179
Query 175 CTTTTCACTCAAGCGATCAGTCTAGGGATGATTGTTACATCTGCTTTGATCATATGGAAA 234
||||||||||| || |||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 180 CTTTTCACTCAGGCCATCAGTCTAGGGATGATTGTCACATCTGCTTTGATCATATGGAAA 239
Query 235 GCTTTGATGTGTGTCACTGGAAGTGAATCTCCGGTGGTGGTTGTTCTTTCTGGAAGCATG 294
||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||
Sbjct 240 GCTTTGATGTGTGTCACTGGAAGCGAATCTCCGGTGGTGGTTGTTCTCTCTGGAAGCATG 299
Query 295 GAACCTGGTTTTAAGAGGGGGGATATATTGTTCTTGCACATGAGTAAGGACCCTATTCGA 354
||||| ||||||||||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 300 GAACCCGGTTTTAAGAGGGGGGATATATTGTTCTTGCACATGAGTAAAGACCCGATTCGA 359
Query 355 GCAGGCGAAATTGTTGTTTTTAATGTTGATGGTCGTGATATTCCCATCGTCCATCGTGTC 414
||||| |||||||||||||| |||||||||||||||||||||||||| ||||||||||||
Sbjct 360 GCAGGTGAAATTGTTGTTTTCAATGTTGATGGTCGTGATATTCCCATTGTCCATCGTGTC 419
Query 415 ATTAAGGTTCACGAAAGGGAAAATACAGGAGAAGTTGATGTTTTAACAAAAGGTGACAAT 474
|||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||
Sbjct 420 ATTAAGGTTCACGAAAGGGAAAATACAGGAGAAGTTGATGTTCTAACGAAAGGTGACAAT 479
Query 475 AACTATGGAGATGACAGACTTCTGTATGCTGAAGGACAGCTTTGGCTTCATCGACATCAT 534
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 480 AACTATGGAGATGACAGACTTCTGTATGCTGAAGGACAGCTTTGGCTTCATCGACATCAT 539
Query 535 ATAATGGGTCGTGCTGTCGGGTTCTTGCCTTATGTTGGATGGGTGACTATTATCATGACA 594
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 540 ATAATGGGTCGTGCTGTCGGGTTCTTGCCTTATGTTGGATGGGTGACTATTATCATGACA 599
Query 595 GAAAAGCCTATCATCAAGTATATTCTCATAGGTGCATTGGGTTTACTCGTTATAACCTCC 654
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 600 GAAAAGCCTATCATCAAGTATATTCTCATAGGTGCATTGGGTTTACTCGTTATAACGTCA 659
Query 655 AAGGATTGAGTCTTTTGGAAAGG 677
|||||||||||||||||||||||
Sbjct 660 AAGGATTGAGTCTTTTGGAAAGG 682
Score = 54.7 bits (29), Expect = 1e-06
Identities = 29/29 (100%), Gaps = 0/29 (0%)
Strand=Plus/Plus
Query 678 TTAAAGTCTTGTTATTTCAATGGAAAAAA 706
|||||||||||||||||||||||||||||
Sbjct 708 TTAAAGTCTTGTTATTTCAATGGAAAAAA 736
> AT3G15710.1 | Symbols: | Peptidase S24/S26A/S26B/S26C family
protein | chr3:5323358-5324908 REVERSE LENGTH=872
Length=872
Score = 514 bits (278), Expect = 5e-145
Identities = 454/538 (84%), Gaps = 16/538 (3%)
Strand=Plus/Plus
Query 121 ATGGGTTGGATCGGAGAAACTGTAGATTCTATCAAATCTATTC-AGATCCGTC-AGCTTT 178
||||||| |||||||||||||||||||| |||||||||| || ||||||||| || ||
Sbjct 124 ATGGGTTTCATCGGAGAAACTGTAGATTCCATCAAATCTA-TCAAGATCCGTCAAG-TTC 181
Query 179 TCACTCAAGCGATCAGTCTAGGGATGATTGTTACATCTGCTTTGATCATATGGAAAGCTT 238
||||||| || |||| ||| || ||||| ||||||||||| ||||| || ||||| || |
Sbjct 182 TCACTCAGGCTATCACTCTCGGTATGATCGTTACATCTGCATTGATAATTTGGAAGGCAT 241
Query 239 TGATGTGTGTCACTGGAAGTGAATCTCCGGTGGTGGTTGTTCTTTCTGGAAGCATGGAAC 298
|||| ||||||||||| |||||||| || ||||| |||||||| |||| ||| |||||||
Sbjct 242 TGATATGTGTCACTGGCAGTGAATCACCAGTGGTTGTTGTTCTCTCTGAAAGTATGGAAC 301
Query 299 CTGGTTTTAAGAGGGGGGATATATTGTTCTTGCACATGAGTAAGGACCCTATTCGAGCAG 358
|||| ||| |||| || |||||||||||||||| |||| | | || |||||||||||||
Sbjct 302 CTGGCTTTCAGAGAGGAGATATATTGTTCTTGCGGATGACTGATGAGCCTATTCGAGCAG 361
Query 359 GCGAAATTGTTGTTTTTAATGTTGATGGTCGTGATATTCCCATCGTCCATCGTGTC-ATT 417
|||| |||||||| || | ||||||||||||||| |||||||| || ||||| | | ||
Sbjct 362 GCGAGATTGTTGTGTTCAGTGTTGATGGTCGTGAAATTCCCATTGTTCATCGAG-CAATC 420
Query 418 AAGGTTCACGAAAG-GGAAAATAC-AGGAGAAGTTGATGTTTTAACAAAAGGTGACAATA 475
|| ||||| || || || | |||| | || |||||||||| |||||||||||||||| |
Sbjct 421 AAAGTTCATGAGAGAGG-AGATACTA-AAGCAGTTGATGTTCTAACAAAAGGTGACAACA 478
Query 476 ACT-ATGGAGATGACAGACTTCTGTATGCTGAAGGACAGCTTTGGCTTCATC-GACATCA 533
| | | ||||||| ||| |||||||||||||||||||||||||| | | |||||
Sbjct 479 A-TGACATTGATGACATTGGTCTCTATGCTGAAGGACAGCTTTGGCTTCA-CAGGCATCA 536
Query 534 TATAATGGGTC-GTGCTGTCGGGTTCTTGCCTTATGTTGGATGGGTGACTATTATCATGA 592
||| ||||| | | ||||| || ||||||||||||||||||||||| |||||||||||||
Sbjct 537 TATCATGGG-CAGAGCTGTTGGATTCTTGCCTTATGTTGGATGGGTTACTATTATCATGA 595
Query 593 CAGAAAAGCCTATCATCAAGTATATTCTCATAGGTGCATTGGGTTTACTCGTTATAAC 650
||||||||||||||||||||||||| ||||| |||||||||||||| |||||||||||
Sbjct 596 CAGAAAAGCCTATCATCAAGTATATACTCATTGGTGCATTGGGTTTGCTCGTTATAAC 653
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35264371194
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5