BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg474388
Length=1458
Score E
Sequences producing significant alignments: (Bits) Value
AT1G52630.1 | Symbols: | O-fucosyltransferase family protein |... 2451 0.0
> AT1G52630.1 | Symbols: | O-fucosyltransferase family protein
| chr1:19606335-19608608 REVERSE LENGTH=1537
Length=1537
Score = 2451 bits (1327), Expect = 0.0
Identities = 1420/1464 (97%), Gaps = 9/1464 (1%)
Strand=Plus/Plus
Query 1 AATCAAATGATTGGATCTCCGGTGAAGCCATTGTTCGTCTTCGTGTTAACTTTCTCTCTT 60
|||||||||||||||||||||||||| ||| ||||||||||||| |||||||||||||||
Sbjct 77 AATCAAATGATTGGATCTCCGGTGAAACCACTGTTCGTCTTCGTCTTAACTTTCTCTCTT 136
Query 61 CTTCTCGTCGTTATTCTTCTATCGCCGTCGCCACATATTCTGCAGATTCCGTTTCCTTCC 120
|| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 137 CTCCTCGTCGTTATTCTTCTATCCCCGTCGCCACATATTCTGCAGATTCCGTTTCCTTCC 196
Query 121 GGTTCATCAGTGGG---TTCTGATATATGGAGTGTGAAGAGGATAATGGAATGGAGACCT 177
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 197 GGTTCATCAGTGGGTTCTTCTGATATATGGAGTGTGAAGAGGATAATGGAATGGAGACCT 256
Query 178 TGCAAATGGTGGTTACAAGGACATCTCACTCCTCTACCCGCTAAAACTAATGGATATATC 237
||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||
Sbjct 257 TGCAAATGGTGGTTACAAGGACACCTCACTCCTCTACCTGCTAAAACTAATGGATATATA 316
Query 238 CGCGTTGATTGCTAGGGCGGCCTGAATCAGATGAGACGCGATTTGTGTGATGGAGTTGGG 297
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 317 CGCGTTGATTGCTATGGCGGCCTGAATCAGATGAGACGCGATTTGTGTGATGGAGTTGGG 376
Query 298 ATTGCCCGTTTGTTGAATGCCACACTTGTTCTGCCAAAGTTTGAGGTAGCTGCGTATTGG 357
|||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||
Sbjct 377 ATTGCCCGTTTGTTGAATGCTACACTTGTTCTGCCAAAGTTTGAGGTAGCTGCCTATTGG 436
Query 358 AATGAGTCAAGTGGATTTGCAGATGTGTTTGATGTAGACTACTTTATTCAAAAGATGAGT 417
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 437 AATGAGTCAAGTGGATTTGCAGATGTGTTTGATGTAGACTACTTTATTCAAAAGATGAGT 496
Query 418 GGTTATATCGAAGTTGTTAAAGAATTGCCGAAAGATATTGAATCAAAAGAACCATTCAAA 477
||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||
Sbjct 497 GGTTATATCGAAGTTGTTAAAGAATTGCCAAAAGATATTGCATCAAAAGAACCATTCAAA 556
Query 478 GTAGACTGCAGCAAAAGGAAGGGTCAATTTGATTACATTGAAAGTGTACTTCCATC-GTT 536
||||||||||||||||||||||||||||||||||||||||||||||| |||||| | |||
Sbjct 557 GTAGACTGCAGCAAAAGGAAGGGTCAATTTGATTACATTGAAAGTGTTCTTCCA-CTGTT 615
Query 537 GTTGGAACATCATTACATTTCTTTTACACCGGCAATGAGCCAACGCAGGGATAGGTATCC 596
|||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||
Sbjct 616 GTTGGAACATCATTACATTTCTTTTACACCAGCAATGAGCCAACGCAGGGACAGGTATCC 675
Query 597 CGAATTTGCAAGAGCCACTCTATGTCAAGCCTGTTATTCGGCTATACGCCTTACTAGTTC 656
||||| ||||||||||||||| ||||||||||||||||||||||||| ||||||||||||
Sbjct 676 CGAATATGCAAGAGCCACTCTGTGTCAAGCCTGTTATTCGGCTATACACCTTACTAGTTC 735
Query 657 CTTGGAGAAGAAGGCCATCGAGCTTTTTGATGCTATTCCCAAACCCTTCTTGTCGCTTCA 716
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 736 CTTGGAGAAGAAGGCCGTCGAGCTTTTTGATGCTATTCCCAAACCCTTCTTGTCGCTTCA 795
Query 717 CCTCAGATTTGAACCGGACATGGTAGCGTACAGCCAATGTGAATACCCAAACCTCTCTCC 776
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 796 CCTCAGATTTGAACCTGACATGGTAGCGTACAGCCAATGTGAATACCCAAACCTCTCTCC 855
Query 777 TTCATCTATCGCTGCCATTGAAGCTGCTCGTGTTGATAGGAAGCCATGGACTGGAGAACT 836
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 856 TTCATCTATCGCTGCCATTGAAGCTGCTCGTGCTGATAGGAAGCCATGGACTGGAGAACT 915
Query 837 AGCTCAGACATGGAGAAAGCGAGGCAAATGCCCTCTGACTCCTAATGAAACAGTGTTGAT 896
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 916 AGCTCAGACATGGAGAAAGCGAGGCAAATGCCCTCTGACTCCTAATGAAACAGTGTTGAT 975
Query 897 GCTTCAGTCACTTAACATTCCAACAAGCACAAACATTTACTTAGCAGCTGGAGACGGTCT 956
|||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||
Sbjct 976 GCTTCAGTCACTTAACATCCCAACAAGCACAAACATATACTTAGCAGCTGGAGACGGTCT 1035
Query 957 AATGGAGATGGAAGGATTCACATCCGTTTATACAAATGTGTTCACAAAGTCTGTTCTACT 1016
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1036 AATGGAGATGGAAGGATTCACATCCGTTTATACAAATGTGTTCACAAAGTCTGTTCTACT 1095
Query 1017 TAACCAAGAGGATTTCACCAGAATGCATGGAAACACAAAAGCTGCATTGGATTATCACGT 1076
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1096 TAACCAAGAGGATTTCACCAGAATGCATGGAAACACAAAAGCTGCATTGGATTATCACGT 1155
Query 1077 GTCCATCAACAGTGACGCATATGTGGCTACGTACTTTGGAAACATGGATAAAATAGTTGC 1136
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1156 GTCCATCAATAGTGACGCATATGTGGCTACGTACTTTGGAAACATGGATAAAATAGTTGC 1215
Query 1137 AGCTATGCGAACATATAAACAGATGCATAATACTCTGTTCCTGAGCAGAAAAGCATTTGC 1196
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1216 AGCTATGCGAACATATAAACAGATGCATAATACACTGTTCCTGAGCAGAAAAGCATTTGC 1275
Query 1197 GGAGCTCACTTCTCAGGGTCTTGAAGGTGCAGAGTTGAAGAAAGCTCTCTGGGAAGTTCA 1256
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1276 GGAGCTCACTTCTCAGGGTCTTGAAGGTGCAGAGTTGAAGAAAGCTCTCTGGGAAGTTCA 1335
Query 1257 TAAAAGCGATTTTGCCATTGGCAGAGG-TTTCGCTTTACCCGATTGCTTCTGTGAATTTG 1315
||||||||||||||||||||||||||| ||| ||||| ||||| ||||||||||||||||
Sbjct 1336 TAAAAGCGATTTTGCCATTGGCAGAGGATTT-GCTTTGCCCGACTGCTTCTGTGAATTTG 1394
Query 1316 AGCTGTAATACTGTTTCTTTTCTTACCACATTCTTGAGCTGACACAACATTTATAATGAC 1375
||||||||| |||||||||||||||||||||||||||||||||||||| ||| |||||||
Sbjct 1395 AGCTGTAATGCTGTTTCTTTTCTTACCACATTCTTGAGCTGACACAACTTTTGTAATGAC 1454
Query 1376 AACAATTTGTTCATGTACTATGGCCCTTTGAGAGTCGATGAGAAC-CTCCTGTCTGCAAA 1434
|| ||||||||||||||||||||| ||||||||||||||||| | |||||||||| |||
Sbjct 1455 AAAAATTTGTTCATGTACTATGGCATTTTGAGAGTCGATGAGA-CGCTCCTGTCTGGAAA 1513
Query 1435 TACAAGAAACTAGTATACATTCTG 1458
||||||||||||||||||||||||
Sbjct 1514 TACAAGAAACTAGTATACATTCTG 1537
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 71887180440
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5