BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg474393
Length=580
Score E
Sequences producing significant alignments: (Bits) Value
AT1G52680.1 | Symbols: | late embryogenesis abundant protein-r... 782 0.0
> AT1G52680.1 | Symbols: | late embryogenesis abundant protein-related
/ LEA protein-related | chr1:19618143-19619021 REVERSE
LENGTH=681
Length=681
Score = 782 bits (423), Expect = 0.0
Identities = 533/583 (91%), Gaps = 20/583 (3%)
Strand=Plus/Plus
Query 1 TTCTACAAACTTATAATCTTAATTATTTAAGACATTTCACAGATCAACCAAAAATATGTC 60
|||||||| |||| ||||||||||| ||||||||||||||||| ||||||| || |||||
Sbjct 6 TTCTACAAGCTTACAATCTTAATTAATTAAGACATTTCACAGAACAACCAAGAAGATGTC 65
Query 61 GTCGAGCCAGCAATTGAGCCACAGCGCCGGAGAAGTCACCGGTCAAGTTCAGCTGAAGAA 120
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 66 GTCGAGCCAGCAGTTGAGCCACAGCGCCGGAGAAGTCACCGGTCAAGTTCAGCTGAAGAA 125
Query 121 GGAAGAGTACTTGAACAATGTATCACACGCAATGAACCAGAATGCTGATCATCACACTCA 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 126 GGAAGAGTACTTGAACAATGTATCACACGCAATGAACCAGAATGCTGATCATCACACCCA 185
Query 181 CTCACAGTCACAGTTACACTCAGAGCATGATCAGAGCAATCCTTCCCTAATTTCCCAGGC 240
||||||||||||||||||||||||||||||||||| |||||||||||||||||| || ||
Sbjct 186 CTCACAGTCACAGTTACACTCAGAGCATGATCAGAACAATCCTTCCCTAATTTCTCAAGC 245
Query 241 CTCTAGTGTCATCCAACAGACTGGTGGACAAGTGAAGAACATGGCACAAGGAGCAGCCGA 300
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 246 CTCTAGTGTCATCCAACAGACGGGTGGACAAGTGAAGAACATGGCACAAGGAGCAGCCGA 305
Query 301 CGCTGTGAAGAACACTCTCGGGATGAGTCCGGCCACCAACAGCCCTAGCAGCCCCGCTGG 360
|||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||
Sbjct 306 TGCTGTGAAGAACACTCTCGGGATGAGTCCGGCTACCAACAGCCCTAGCAGCCCGGCTGG 365
Query 361 GACGGCCCGCTCGAGCAAGCCCGGTTCCAAGAATATTTAAAAATGAATTATTTAAGAAGT 420
||| ||||||||| ||||||||||||||||| ||| |||||| || ||||||||||| |
Sbjct 366 CACGACCCGCTCGAACAAGCCCGGTTCCAAGATTATCTAAAAAGGAGTTATTTAAGAAAT 425
Query 421 ATTGGCCCAATCTTTTCCAATAAAATAAAAATGAATCTTGTTTTCTGATTGCTTTGGTTG 480
|||||| |||||||||||||||||| |||||||||| |||||||||||||||||||||||
Sbjct 426 ATTGGCTCAATCTTTTCCAATAAAACAAAAATGAATATTGTTTTCTGATTGCTTTGGTTG 485
Query 481 TTTAAATTTCTGAATTTTGTGG-A--G-AC---AT-TT--ATA-A-------GTGTCTTA 522
|| ||||||||||||||||||| | | || || || | | | ||||||||
Sbjct 486 TTCAAATTTCTGAATTTTGTGGTATAGTACTGTATGTTGGAGACATTTCTACGTGTCTTA 545
Query 523 TA-A-CCCCTAGTGAGGGTTTTTATATTATAAATTAGTCATAT 563
|| | |||||||| ||||||||||||| |||||||||||||||
Sbjct 546 TATAACCCCTAGTAAGGGTTTTTATATAATAAATTAGTCATAT 588
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 27879951585
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5