BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg474395
Length=752
Score E
Sequences producing significant alignments: (Bits) Value
AT1G52690.1 | Symbols: | Late embryogenesis abundant protein (... 1009 0.0
> AT1G52690.1 | Symbols: | Late embryogenesis abundant protein
(LEA) family protein | chr1:19619745-19620844 FORWARD LENGTH=862
Length=862
Score = 1009 bits (546), Expect = 0.0
Identities = 642/688 (93%), Gaps = 8/688 (1%)
Strand=Plus/Plus
Query 46 CGAGTTTTTTCGAAGAGAGAAAATGGCGTCTCATCAAGAACAGAGTTACAAAGCTGGTGA 105
||| ||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 76 CGAATTTCTTCGAAGAGTGAAAATGGCGTCTCATCAAGAACAGAGTTACAAAGCTGGTGA 135
Query 106 AACTAGAGGCAAGGTTCAGGAGAAAACAGGGGAAGCTATGGGAACCATGGGGGAGAAAAC 165
||| |||||||||| |||||||||||| ||||||||||||||||| |||||||| |||||
Sbjct 136 AACCAGAGGCAAGGCTCAGGAGAAAACTGGGGAAGCTATGGGAACGATGGGGGACAAAAC 195
Query 166 ACAAGCAGCTAAGGAAAAAACTCAAGAGACAGCCCAATCAGCCGAACAAAAGGCTCATGA 225
||||||||||||||| |||||||||||||||||||| |||||| ||||||||||||||||
Sbjct 196 ACAAGCAGCTAAGGACAAAACTCAAGAGACAGCCCAGTCAGCCCAACAAAAGGCTCATGA 255
Query 226 AACAGCTCAGTCAGCTAAAGACAAGACATCTCAAGCTGCACAGACGACTCAACAGAGAGC 285
||||||||||||||||||||||||||| |||||||||||||| ||||||||| |||||||
Sbjct 256 AACAGCTCAGTCAGCTAAAGACAAGACGTCTCAAGCTGCACAAACGACTCAAGAGAGAGC 315
Query 286 TCAAGAGTCCAAAGACAAGACAGGAAGCTACATGTCGGAAACTGGAGAAGCAATCAAGAA 345
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 316 TCAAGAGTCCAAAGACAAGACAGGAAGCTACATGTCGGAAACTGGAGAAGCAATCAAGAA 375
Query 346 CAAGTCACAAGATGCAGCAGAATATACCAAAGAGACTGCAGAAGCAGGTAAGGAGAAGAC 405
|||| |||| |||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 376 CAAGGCACACGATGCAGCTGAATATACCAAAGAGACTGCAGAAGCAGGTAAGGAGAAGAC 435
Query 406 GAGTGGGATCTTGGGCCAGACCGGTGAGCATGTAAAACAGATGGCTATGGGAGCTACTGA 465
||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct 436 CAGTGGGATCTTGGGCCAGACCGGTGAGCAGGTGAAACAGATGGCTATGGGAGCTACTGA 495
Query 466 TGCAGTGAAGCACACTTTAGGGCTTGGCGCTGATGAAGGAAACAAAGAACAAGTTTCTTC 525
||| ||||||||||||||||||||| || |||||||||||||||||||||| ||||||||
Sbjct 496 TGCGGTGAAGCACACTTTAGGGCTTCGCACTGATGAAGGAAACAAAGAACATGTTTCTTC 555
Query 526 AGCTCCAAGTACTACTAC---GACCACTACTCGTGAGACACAGAGGAAGTGAAGAAGAGG 582
|||||||||||||||||| |||||||||||||||||||||||||||||||||| | |
Sbjct 556 AGCTCCAAGTACTACTACTACGACCACTACTCGTGAGACACAGAGGAAGTGAAGA-G-G- 612
Query 583 ATAAATAtttgttttgtgttcttggttttcatgtttgtttgctttggttagtgtttgttg 642
|||||||||||||| |||||| |||||||||||||||||||||||| |||||||||||||
Sbjct 613 ATAAATATTTGTTTCGTGTTCGTGGTTTTCATGTTTGTTTGCTTTGATTAGTGTTTGTTG 672
Query 643 tgttCGTGAGATTATGTTTATCCTTCTTGTTGTTTATTGGGTTTGAATGTACTTTTACGT 702
||||||||| ||||| |||||| |||||||||||||||||||||||||||| |||||
Sbjct 673 CGTTCGTGAGGTTATGCCGATCCTTGTTGTTGTTTATTGGGTTTGAATGTACTTCTACGT 732
Query 703 ATTATAATATGCGATGGTTTTCTTCTAT 730
||||| || | ||||||||||| |||
Sbjct 733 ATTATCATGTA--ATGGTTTTCTTTTAT 758
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36520224869
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5