BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg474396
Length=887
Score E
Sequences producing significant alignments: (Bits) Value
AT1G52695.1 | Symbols: | alpha/beta-Hydrolases superfamily pro... 1339 0.0
AT1G52696.1 | Symbols: | Pseudogene of AT1G52695; phospholipas... 481 6e-135
> AT1G52695.1 | Symbols: | alpha/beta-Hydrolases superfamily protein
| chr1:19621238-19623461 REVERSE LENGTH=942
Length=942
Score = 1339 bits (725), Expect = 0.0
Identities = 846/902 (94%), Gaps = 18/902 (2%)
Strand=Plus/Plus
Query 1 TTTCATCTCTAGTGCAAGTTAAAAGCTTCCGAAATAATAATATAAAAACAAAAGTTATTC 60
|||||||||||||||||||||||| ||||||||||||||||||||||| |||| |||||
Sbjct 4 TTTCATCTCTAGTGCAAGTTAAAACCTTCCGAAATAATAATATAAAAAAAAAAAATATTC 63
Query 61 TCATTGGAGCATGGCTTCTGGTAGCGGAAACGTAAGTGGCTTGGAATTTGGACAGGTTAA 120
||||| ||||||||||||||||||| |||||||||||||||||||||||||||| ||||
Sbjct 64 TCATTAGAGCATGGCTTCTGGTAGCATAAACGTAAGTGGCTTGGAATTTGGACAGATTAA 123
Query 121 TGTC-ATTAAACACACAGGAATTCATAAAGCTACTATAATCTGGCTACATGACGTA-GAC 178
| | || | | ||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct 124 T-ACTGTTTACCCCACAGGAATTCATAAAGCTACTATAGTCTGGCTACATGACGTAGGA- 181
Query 179 AACACAGGCTTCGACTCACTTGAGCCTCTGCGAAATTTGCGTCTTCCCAATATAAAATGG 238
|||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 182 AACACAGGCTTCAACTCACTTGAGCCTCTGCAAAATTTGCGTCTTCCCAATATAAAATGG 241
Query 239 ATTTGTCCGACTGCTCCTAGACGTCGTGTTACTTCCTTGGGTGGAGAGATAACCAATGCA 298
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 242 ATTTGTCCGACTGCTCCTAGACGTCGTGTTACTTCCTTGGGTGGAGAGATAACCAATGCA 301
Query 299 TGGTGCGACATCACAAAAGTTTCTGAGAACATGCAAGATGATTTTGGAACTTTAAATTAT 358
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 302 TGGTGCGACATCGCAAAAGTTTCTGAGAACATGCAAGATGATTTTGGAACTTTAAATTAT 361
Query 359 GTAAATGAATATATTACCTA-CCTTTTCTCTTCTGAACCACAAAATGTGATAAAAGGAGT 417
||||||||||||||||| || |||||||||| ||||||||||||||| |||||||||||
Sbjct 362 GTAAATGAATATATTAC-TAGCCTTTTCTCTAATGAACCACAAAATGTCATAAAAGGAGT 420
Query 418 GGCAGGTATCGGCTTGGGTGCAGCACAAGCTCTCTATTATACGAGTTGTTATGCCTTTGG 477
||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 421 GGCAGGTCTCGGCTTGGGTGCAGCACAAGCTCTTTATTATACGAGTTGTTATGCCTTTGG 480
Query 478 ATGGGTTCCCATAAACCCACAAATTACTATAGGGATCAATGGTTGGCTTCCTGGCTGGAG 537
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 481 ATGGGTTCCCATAAACCCACAAATTGTTATAGGGATCAATGGTTGGCTTCCTGGCTGGAG 540
Query 538 GAGATTGGAATACAATATGAATAATACTAATTTTGGGACCGCAAATCGTGCTGCCGCATC 597
|||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 541 GAGATTAGAATACAATATGAATAATACTAATTTTGGGACCGCAAATCGTGCTGCAGCATC 600
Query 598 AAAAATCTTAATTCTGCATGGAACGTCTGATGATGTAGTTCCCTCCTCATTTGGATACAG 657
||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct 601 AAAAATCTTAATTCTGCATGGAACGTCTGATGATGTAGTTCCCTCTTCATTCGGATACAG 660
Query 658 ATGTGCTGACTCCCTTCGCGTGGCTGGATTTCCAACCTTGTTCAAACAATGTGGAGGGGA 717
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 661 ATGTGCTGACTCCCTTCGCATGGCTGGATTTCCAACCTTGTTCAAACAATGTGGAGGGGA 720
Query 718 TCATGTAACGAATGAGATCCGTGTCTGGCTCACAAACCTTGGGCTTTGAGGATATGGTTA 777
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 721 TCATGTAATTAATGAGATCCGTGTCTGGCTCACAAACCTTGGGCTTTGAGGATATGGTTA 780
Query 778 AATTCTGCATAAAGTAAAGAATTGGGGAACAAAACTAT---CGTACAATATAATAAAGTG 834
| |||||||||||| ||| || |||||| ||||||||| |||||||||||||||||||
Sbjct 781 ATTTCTGCATAAAGAAAACAAATGGGGAGCAAAACTATTATCGTACAATATAATAAAGTG 840
Query 835 ttt--tttt----ttt--ttttt-GTCTATGTTATTCATAATCAATAGTTAATGTATTCT 885
||| |||| ||| ||||| |||| ||||||||||||||||||||||||||||| |
Sbjct 841 TTTAGTTTTGAGCTTTCGTTTTTTGTCTTTGTTATTCATAATCAATAGTTAATGTATTAT 900
Query 886 TC 887
||
Sbjct 901 TC 902
> AT1G52696.1 | Symbols: | Pseudogene of AT1G52695; phospholipase/carboxylesterase
family protein | chr1:19624922-19625777
REVERSE LENGTH=514
Length=514
Score = 481 bits (260), Expect = 6e-135
Identities = 375/429 (87%), Gaps = 13/429 (3%)
Strand=Plus/Plus
Query 293 AATGCATGGTGCGACATCACAAAAGTTTCTGAGAACATGCAAGATGATTTTGGAACTTTA 352
||| || |||||||||| |||||| |||||||||||||| ||||||||||| || ||||
Sbjct 93 AAT-CAGGGTGCGACATGACAAAACCTTCTGAGAACATGCTAGATGATTTTGAAAATTTA 151
Query 353 AATTATGTAAA-TGAATATATTACCTA-CCTTTTCTCTTCTGAACCACAAAATGTGATAA 410
|||||| ||| | || ||||| | | ||||||||||||||||||| | |||| || |
Sbjct 152 AATTATACAAACT-CATTTATTA-CGAGCCTTTTCTCTTCTGAACCAGACCATGTTATGA 209
Query 411 AAGGAGT-GGCAGGTATCGGCTTGGGTGCAGCACAAGCTCTCTATTATACGAGTTGTTAT 469
||||||| || ||| |||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 210 AAGGAGTAGG-AGGAATCGGCTTGGGTGCAGCACAAGCTCTATATTATACGAGTTGTTAT 268
Query 470 GCCTTTGGATGGGTTCCCATAAACCCACAAATTACTATAGGGATCAATGGTTGGCTTCCT 529
|| ||||||||||||||||| | |||||||||| |||| ||||||||||||||||||||
Sbjct 269 GCGTTTGGATGGGTTCCCATTAGCCCACAAATTGTTATAAGGATCAATGGTTGGCTTCCT 328
Query 530 GGCTGGAGGAGATTGGAATACAATATGAATAATACTAATTTTGGGACCGCAAATCGTGCT 589
|||||||||||||| |||||||||||| ||| |||||||||||||| ||||||||||||
Sbjct 329 GGCTGGAGGAGATTAGAATACAATATGTGTAACACTAATTTTGGGACTGCAAATCGTGCT 388
Query 590 GCCGCATCAAAAATCTTAATTCTGCATGGAAC-GTCTGATGATGT-AGTTCCCTCCT-CA 646
|| ||||||| || ||| || ||||||| || | |||||||||| | ||||||| | ||
Sbjct 389 GCAACATCAAATATTTTACTTATGCATGGGACTG-CTGATGATGTTA-TTCCCTC-TGCA 445
Query 647 TTTGGATACAGATGTGCTGACTCCCTTCGCGTGGCTGGATTTCCAACCTTGTTCAAACAA 706
|||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 446 TTTGGATACAAATGTGCTGACTCCCTTCGAATGGCTGGATTTCCAACCTTGTTCAAACAA 505
Query 707 TGTGGAGGG 715
|| ||||||
Sbjct 506 TGCGGAGGG 514
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43301834714
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5