BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg474397
Length=919
Score E
Sequences producing significant alignments: (Bits) Value
AT1G52700.1 | Symbols: | alpha/beta-Hydrolases superfamily pro... 981 0.0
AT3G15650.2 | Symbols: | alpha/beta-Hydrolases superfamily pro... 660 0.0
> AT1G52700.1 | Symbols: | alpha/beta-Hydrolases superfamily protein
| chr1:19631126-19633440 REVERSE LENGTH=902
Length=902
Score = 981 bits (531), Expect = 0.0
Identities = 602/635 (95%), Gaps = 9/635 (1%)
Strand=Plus/Plus
Query 286 TCATCTCAGCTCATGGAAAGCTTGCATGCATCTTCCAAATATAAAATGGATTTGTCCAAC 345
||||||||||||||||| ||| | ||||||||||||||||||||||||||||||||||
Sbjct 219 TCATCTCAGCTCATGGACAGC-T---TGCATCTTCCAAATATAAAATGGATTTGTCCAAC 274
Query 346 CGCTCCTTCGCGTCCTGTTACAAGTCTTGGTGGATTTACCTGCACTGCTTGGTTTGACGT 405
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 275 CGCTCCTTCGCGTCCTGTTACAAGTCTTGGTGGATTTACATGCACTGCTTGGTTTGACGT 334
Query 406 TGGGGAAATTTCTGAAGATGGTCATGATGATTTGGAAGGTTTAGATGCCTCAGCTTCACA 465
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 335 TGGGGAAATTTCTGAAGATGGTCATGATGATTTGGAAGGTTTAGATGCCTCAGCTTCACA 394
Query 466 TATTGCTAATCTTTTGT-CTGCTGAACCAGCAGATGTTCAAGTGGGCATAGGAGGTTTTA 524
||||||||| ||||||| || ||||||||||||||||| |||| ||||||||||||||||
Sbjct 395 TATTGCTAACCTTTTGTCCT-CTGAACCAGCAGATGTTAAAGTAGGCATAGGAGGTTTTA 453
Query 525 GCATGGGAGCAGCAATATCTCTCTACTCCGCGACTTGTTATGCTCTTGGACGTTATGGAA 584
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 454 GCATGGGAGCAGCAATATCTCTCTACTCCGCGACTTGTTATGCTCTTGGACGTTATGGAA 513
Query 585 CTGGCCATGCGTATCCTTTAAACCTACGAGCTGTTGTAGGGCTCAGCGGCTGGCTTCCTG 644
||||||||||||||||| ||||||||| |||||||||||| |||||||||||||||||||
Sbjct 514 CTGGCCATGCGTATCCTATAAACCTACAAGCTGTTGTAGGACTCAGCGGCTGGCTTCCTG 573
Query 645 GTTGGAAGAGCTTAATAAGGAGCAAAATAGAATGTTCATATGAGGCTGCAAGGCGTGCTG 704
||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||
Sbjct 574 GTTGGAAGAGCTTAA---GGAGCAAAATAGAATGTTCATTTGAGGCTGCAAGGCGTGCTG 630
Query 705 CGTCGTTACCAATCATCCTTACACATGGGACATCCGATGATGTGGTTCCTTATAGGTTTG 764
| ||||||||||| || ||||||||||| || ||||||||||||||||||||||||||||
Sbjct 631 CATCGTTACCAATTATACTTACACATGGAACTTCCGATGATGTGGTTCCTTATAGGTTTG 690
Query 765 GAGAGAAATCTGCGCAGTCTCTTGGCATGGCTGGATTTCGACAAGCCATGTTCAAACCAT 824
|||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||
Sbjct 691 GAGAGAAATCTGCGCAGTCTCTTGGCATGGCTGGATTTCGACTAGCCATGTTTAAACCAT 750
Query 825 ACGAAGGACTTGGTCACTATACTGTTCCCAAAGAAATGAATGAGGTCGTTCACTGGCTCA 884
|||||||||||||||| ||||| ||||||| ||||||| |||||||||||||||||||||
Sbjct 751 ACGAAGGACTTGGTCATTATACCGTTCCCAGAGAAATGGATGAGGTCGTTCACTGGCTCA 810
Query 885 CAGCGAGGCTCGGGCTTGAGGGCTCGTGCTAAACT 919
|| ||| |||||| |||||||||||| ||||||||
Sbjct 811 CAACGATGCTCGGACTTGAGGGCTCGCGCTAAACT 845
Score = 315 bits (170), Expect = 6e-85
Identities = 195/207 (94%), Gaps = 1/207 (0%)
Strand=Plus/Plus
Query 2 TTGAAAGCTCTTCAGAAGACAAATTACAAAACTTTAAGAGGATTCAATACAC-TTGATCC 60
|||||||||||| ||||||| ||||||||||| || |||||||||||||||| || | |
Sbjct 11 TTGAAAGCTCTTAAGAAGACGAATTACAAAACCTTGAGAGGATTCAATACACTTTCAACA 70
Query 61 AAAAATGAGTTACTCTCGTCAAAGCATGGGTTCTGGAAGTAGAAATGCAAGGGGATATGA 120
||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||
Sbjct 71 AAAAATGAGTTACTCTCATCAAAGCATGGGTTCTGGTAGTAGAAATGCAAGGGGATATGA 130
Query 121 ATTTGGAAGGACTTATGTTGTGAGGCCTAAGGGAAAGCATCAAGCCACTCTAGTCTGGCT 180
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 131 ATTTGGAAGGACTTATGTTGTGAGGCCTAAAGGAAAGCATCAAGCCACTCTAGTCTGGCT 190
Query 181 TCATGGTCTTGGTGACAATGGGTCTAG 207
||||||||||||||||||||| |||||
Sbjct 191 TCATGGTCTTGGTGACAATGGCTCTAG 217
> AT3G15650.2 | Symbols: | alpha/beta-Hydrolases superfamily protein
| chr3:5305918-5307932 FORWARD LENGTH=1081
Length=1081
Score = 660 bits (357), Expect = 0.0
Identities = 709/872 (81%), Gaps = 51/872 (6%)
Strand=Plus/Plus
Query 60 CAAAAATGAGTTACTCTCGTCAAAGCATGGGTTCTGGAAGTAGAAATGCAAGGGGATATG 119
||| |||||| || ||||||||||||||||||||||| ||||||| | ||||||| ||||
Sbjct 84 CAACAATGAGCTATTCTCGTCAAAGCATGGGTTCTGGTAGTAGAAGTACAAGGGGCTATG 143
Query 120 AATTTGGAAGGACTTATGTTGTGAGGCCTAAGGGAAAGCATCAAGCCACTCTAGTCTGGC 179
| ||||||||||||||||||||||||||||| |||||||| ||||| ||| | || |||
Sbjct 144 AGTTTGGAAGGACTTATGTTGTGAGGCCTAAAGGAAAGCACCAAGCTACTATTGTTTGG- 202
Query 180 TT-CATGGTCTTGGTGACAATGGGTCTAGCATAAACTCCTGCTTGGTGCTTGCTCTTCTT 238
|| || |||||||| |||||||| || || | | | | |||| | | | |||| |
Sbjct 203 TTGCACGGTCTTGGAGACAATGGCTCCAG-A-A---T--T--TTGGCG-T-GTTCTT-T- 249
Query 239 GTCTTAAGTATAAATAT-ATGTTTTAGGAAAAAGCTTCATCTTT-TG--GCTCATCTCAG 294
| | || | | | | | ||| || | || ||||| || |||| ||||||
Sbjct 250 GA-T-AAC-A-ACTTCTCAC-TTT--GGCTCT-G-TT--TCTTTCTGCAGCTCGTCTCAG 298
Query 295 CTCAT-GGAAAGCTTGCATGCATCTTCCAAATATAAAATGGATTTGTCCAACCGCTCCTT 353
|| || ||||||| | | | ||||||||| || ||||||||||||||||| |||||||
Sbjct 299 CT-ATTGGAAAGCCTAC---C-TCTTCCAAACATCAAATGGATTTGTCCAACTGCTCCTT 353
Query 354 CGCGTCCTGTTACAAGTCTTGGTGGATTTACCT-GCACTGCTTGGTTTGACGTTGGG-GA 411
||||||||||| | ||| ||||||||| ||| ||||||| ||||||||||| ||| ||
Sbjct 354 CGCGTCCTGTTTCGCTTCTCGGTGGATTT-CCTTGCACTGCCTGGTTTGACGT-GGGAGA 411
Query 412 AATTTCTGAAGATGGTCATGATGATTTGGAAGGTTTAGATGCCTCAGCTTCACATATTGC 471
||||||||| ||| |||||||||| | ||||| |||||||| |||||| ||||||||||
Sbjct 412 AATTTCTGAGGATCTTCATGATGATATAGAAGGCTTAGATGCTTCAGCTGCACATATTGC 471
Query 472 TAATCTTTTGTCTGCTGAACCAGCAGATGTTCAA-GT-GGGCATAGGAGGTTTTAGCATG 529
||| || || |||||||| ||| ||||||| ||| || ||| ||||||||||| || |||
Sbjct 472 TAACCTATTATCTGCTGAGCCAACAGATGT-CAAAGTTGGG-ATAGGAGGTTTCAGTATG 529
Query 530 GGAGCAGCAATATCTCTCTACTCCGCGACTTGTTATGCTCTTGGACGTTATGGAACTGGC 589
|| ||||||||| ||||||||||| |||| || || |||||||||||||||||||| ||
Sbjct 530 GGTGCAGCAATAGCTCTCTACTCCACGACGTGCTACGCTCTTGGACGTTATGGAACCGGA 589
Query 590 CATGCGTATCCTTTAAACCTACGAGCTGTTGTAGGGCTCAGCGGCTGGCTTCCTGGTTGG 649
||||| ||| || |||||||||||||| |||||| || ||||| |||||||||||||||
Sbjct 590 CATGCTTATACTATAAACCTACGAGCTACTGTAGGACTTAGCGGTTGGCTTCCTGGTTGG 649
Query 650 AAGAGCTTAATAAGGAGCAAAATAGAATGTTC-ATATGAGGCTGCAAGGCGTGCTGCGTC 708
| |||||||| |||||||||||||| |||| | |||||| ||||||||| ||||| ||
Sbjct 650 AGGAGCTTAA---GGAGCAAAATAGAAAGTTCGA-ATGAGGTTGCAAGGCGCGCTGCATC 705
Query 709 GTTACCAATCATCCTTACACATGGGACATCCGATGATGTGGTTCCTTATAGGTTTGGAGA 768
| |||| ||| | ||| ||||||| || || || ||||| ||||||||||| ||||||||
Sbjct 706 GATACCGATCTTACTTGCACATGGAACTTCGGACGATGTAGTTCCTTATAGATTTGGAGA 765
Query 769 GAAATCTGCGCAGTCTCTTGGCATGGCTGGATTTCGACAAGCCATGTTCAAACCATACGA 828
|||||||| || || |||| |||||||||||| |||||| | |||||||||||||| ||
Sbjct 766 AAAATCTGCTCATTCACTTGCCATGGCTGGATTCCGACAAACTATGTTCAAACCATATGA 825
Query 829 AGGACTTGGTCACTATACTGTTCCCAAAGAAATGAATGAGGTCGTTCACTGGCTCA-CAG 887
||| |||||||||||||| ||||| ||||||||| ||||||| |||||||||||| |
Sbjct 826 AGGGCTTGGTCACTATACGGTTCCTAAAGAAATGGATGAGGTGGTTCACTGGCTCGTCT- 884
Query 888 CGAGGCTCGGGCTTGAGGGCTCGTGCTAAACT 919
| ||||| || || ||||| ||| | ||||||
Sbjct 885 CAAGGCTTGGTCTCGAGGGTTCGCGTTAAACT 916
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44909327418
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5