BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg474400 Length=693 Score E Sequences producing significant alignments: (Bits) Value AT1G52740.1 | Symbols: HTA9 | histone H2A protein 9 | chr1:1964... 976 0.0 > AT1G52740.1 | Symbols: HTA9 | histone H2A protein 9 | chr1:19645268-19646482 FORWARD LENGTH=807 Length=807 Score = 976 bits (528), Expect = 0.0 Identities = 663/722 (92%), Gaps = 33/722 (5%) Strand=Plus/Plus Query 1 CTCTTCGAGCTCATCTTCTTCTCTCtttttttATCTTCTGGTGGTGCGATCTCCTTTCTC 60 |||||||||||||||||||||||||| |||||||||| |||| ||||||||||||||||| Sbjct 40 CTCTTCGAGCTCATCTTCTTCTCTCTCTTTTTATCTT-TGGTTGTGCGATCTCCTTTCTC 98 Query 61 TTTCAATCTCCGAA-GATTTTACAGTGAGATATTTGGCGGGAAAATGTCGGGGAAAGGTG 119 ||||||||||| || |||||||| |||||||||||||||||||||||||||||||||||| Sbjct 99 TTTCAATCTCC-AAGGATTTTACTGTGAGATATTTGGCGGGAAAATGTCGGGGAAAGGTG 157 Query 120 CTAAGGGTTTGATTATGGGGAAACCCAGCGGTAGCGACAAGGATAAGGACAAGAAGAAGC 179 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 158 CTAAAGGTTTGATTATGGGGAAACCCAGCGGTAGCGACAAGGATAAGGACAAGAAGAAGC 217 Query 180 CTATCACTCGTTCTTCTCGCGCTGGTCTTCAGTTCCCAGTTGGTAGGGTTCATCGACTGT 239 ||||||||||||||||||| |||||||| |||||||||||||||||||| ||||| |||| Sbjct 218 CTATCACTCGTTCTTCTCGAGCTGGTCTCCAGTTCCCAGTTGGTAGGGTGCATCGTCTGT 277 Query 240 TGAAGACAAGGTCCACTGCTCATGGAAGGGTTGGAGCAACCGCAGCTGTTTACACAGCAG 299 | |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 278 TAAAGACAAGGTCCACTGCTCATGGAAGGGTTGGAGCAACTGCAGCTGTTTACACAGCAG 337 Query 300 CGATATTGGAGTATCTGACTGCGGAAGTTTTGGAGTTGGCTGGTAACGCCAGCAAGGATC 359 | |||||||||||||||||||| ||||||||||||||||||||||||||||||||||| | Sbjct 338 CAATATTGGAGTATCTGACTGCAGAAGTTTTGGAGTTGGCTGGTAACGCCAGCAAGGA-C 396 Query 360 T-GAAGGTGAAACGTATCTCGCCGAGGCATTTGCAGCTTGCGATTCGCGGAGATGAAGAG 418 | ||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||| Sbjct 397 TTGAAGGTGAAACGTATCTCGCCGAGGCATTTGCAGCTTGCGATTCGTGGAGATGAGGAG 456 Query 419 CTCGATACTCTCATCAAAGGAACTATAGCTGGTGGTGGAGTCATCCCGCACATTCACAAG 478 ||||||||||||||||||||||||||||||||||||||||||||||| || || |||||| Sbjct 457 CTCGATACTCTCATCAAAGGAACTATAGCTGGTGGTGGAGTCATCCCTCATATCCACAAG 516 Query 479 TCG-CTCATCAACAAATCCGCCAAGGAATAGGACTTTT--AGTTACCCGCTTTGTTCTGT 535 | |||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 517 A-GTCTCATCAACAAATCCGCCAAGGAATAGGACTTTTTTAGTTACCCGCTTTGTTCTGT 575 Query 536 GTTGCTTTTCTGTTTT------GTTT----GA-T---------A-A-GATGCTAGAGA-G 572 |||||||||||||||| |||| || | | | ||||||||||| | Sbjct 576 GTTGCTTTTCTGTTTTCTAAATGTTTTTAAGAGTTGTTGTTTGATAAGATGCTAGAGAAG 635 Query 573 CTCTTGT-AGGATTGTTTGCTATTGTTCGATCGATCGGCGTACTTTGTGTTAGAGACGTG 631 ||||| | ||||| ||||||||||||||| |||||| ||||||||||||||||||||| Sbjct 636 CTCTTTTTAGGATCGTTTGCTATTGTTCGTTCGATCAGCGTACTTTGTGTTAGAGACGCC 695 Query 632 AGTCGATTTATCTATCTTTATGAATGTATTCGAATGATTATCCAAAAACCATTTCTGACT 691 |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 696 AGTCGATTTATCTATCTTTAAAAATGTATTCGAATGATTATCCAAAAACCATTTCTGACT 755 Query 692 AC 693 || Sbjct 756 AC 757 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 33556410196 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5