BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg474400
Length=693
Score E
Sequences producing significant alignments: (Bits) Value
AT1G52740.1 | Symbols: HTA9 | histone H2A protein 9 | chr1:1964... 976 0.0
> AT1G52740.1 | Symbols: HTA9 | histone H2A protein 9 | chr1:19645268-19646482
FORWARD LENGTH=807
Length=807
Score = 976 bits (528), Expect = 0.0
Identities = 663/722 (92%), Gaps = 33/722 (5%)
Strand=Plus/Plus
Query 1 CTCTTCGAGCTCATCTTCTTCTCTCtttttttATCTTCTGGTGGTGCGATCTCCTTTCTC 60
|||||||||||||||||||||||||| |||||||||| |||| |||||||||||||||||
Sbjct 40 CTCTTCGAGCTCATCTTCTTCTCTCTCTTTTTATCTT-TGGTTGTGCGATCTCCTTTCTC 98
Query 61 TTTCAATCTCCGAA-GATTTTACAGTGAGATATTTGGCGGGAAAATGTCGGGGAAAGGTG 119
||||||||||| || |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 99 TTTCAATCTCC-AAGGATTTTACTGTGAGATATTTGGCGGGAAAATGTCGGGGAAAGGTG 157
Query 120 CTAAGGGTTTGATTATGGGGAAACCCAGCGGTAGCGACAAGGATAAGGACAAGAAGAAGC 179
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 158 CTAAAGGTTTGATTATGGGGAAACCCAGCGGTAGCGACAAGGATAAGGACAAGAAGAAGC 217
Query 180 CTATCACTCGTTCTTCTCGCGCTGGTCTTCAGTTCCCAGTTGGTAGGGTTCATCGACTGT 239
||||||||||||||||||| |||||||| |||||||||||||||||||| ||||| ||||
Sbjct 218 CTATCACTCGTTCTTCTCGAGCTGGTCTCCAGTTCCCAGTTGGTAGGGTGCATCGTCTGT 277
Query 240 TGAAGACAAGGTCCACTGCTCATGGAAGGGTTGGAGCAACCGCAGCTGTTTACACAGCAG 299
| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 278 TAAAGACAAGGTCCACTGCTCATGGAAGGGTTGGAGCAACTGCAGCTGTTTACACAGCAG 337
Query 300 CGATATTGGAGTATCTGACTGCGGAAGTTTTGGAGTTGGCTGGTAACGCCAGCAAGGATC 359
| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
Sbjct 338 CAATATTGGAGTATCTGACTGCAGAAGTTTTGGAGTTGGCTGGTAACGCCAGCAAGGA-C 396
Query 360 T-GAAGGTGAAACGTATCTCGCCGAGGCATTTGCAGCTTGCGATTCGCGGAGATGAAGAG 418
| ||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||
Sbjct 397 TTGAAGGTGAAACGTATCTCGCCGAGGCATTTGCAGCTTGCGATTCGTGGAGATGAGGAG 456
Query 419 CTCGATACTCTCATCAAAGGAACTATAGCTGGTGGTGGAGTCATCCCGCACATTCACAAG 478
||||||||||||||||||||||||||||||||||||||||||||||| || || ||||||
Sbjct 457 CTCGATACTCTCATCAAAGGAACTATAGCTGGTGGTGGAGTCATCCCTCATATCCACAAG 516
Query 479 TCG-CTCATCAACAAATCCGCCAAGGAATAGGACTTTT--AGTTACCCGCTTTGTTCTGT 535
| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 517 A-GTCTCATCAACAAATCCGCCAAGGAATAGGACTTTTTTAGTTACCCGCTTTGTTCTGT 575
Query 536 GTTGCTTTTCTGTTTT------GTTT----GA-T---------A-A-GATGCTAGAGA-G 572
|||||||||||||||| |||| || | | | ||||||||||| |
Sbjct 576 GTTGCTTTTCTGTTTTCTAAATGTTTTTAAGAGTTGTTGTTTGATAAGATGCTAGAGAAG 635
Query 573 CTCTTGT-AGGATTGTTTGCTATTGTTCGATCGATCGGCGTACTTTGTGTTAGAGACGTG 631
||||| | ||||| ||||||||||||||| |||||| |||||||||||||||||||||
Sbjct 636 CTCTTTTTAGGATCGTTTGCTATTGTTCGTTCGATCAGCGTACTTTGTGTTAGAGACGCC 695
Query 632 AGTCGATTTATCTATCTTTATGAATGTATTCGAATGATTATCCAAAAACCATTTCTGACT 691
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 696 AGTCGATTTATCTATCTTTAAAAATGTATTCGAATGATTATCCAAAAACCATTTCTGACT 755
Query 692 AC 693
||
Sbjct 756 AC 757
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33556410196
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5