BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg474402
Length=1188
Score E
Sequences producing significant alignments: (Bits) Value
AT1G52760.1 | Symbols: LysoPL2 | lysophospholipase 2 | chr1:196... 1781 0.0
> AT1G52760.1 | Symbols: LysoPL2 | lysophospholipase 2 | chr1:19651325-19652743
FORWARD LENGTH=1219
Length=1219
Score = 1781 bits (964), Expect = 0.0
Identities = 1124/1199 (94%), Gaps = 19/1199 (2%)
Strand=Plus/Plus
Query 1 CcaaaaaccaaaactcactgaaacaaacaaaaaaaaaaaCATCAAAACGATGCCGTCGGA 60
||||||||||||| |||||| | | |||||||| ||||||||||||||||||||||
Sbjct 12 CCAAAAACCAAAATTCACTG---C---C-AAAAAAAACACATCAAAACGATGCCGTCGGA 64
Query 61 AGCGGAAAGCTCAGCGAATTca----c--c-a--ccaccaccaccaGCGAATTTCTGGGG 111
|||||| ||||||||||||||| | | | || ||||||||| |||||||||||||
Sbjct 65 AGCGGAGAGCTCAGCGAATTCAGCTCCGGCAACTCCGCCACCACCACCGAATTTCTGGGG 124
Query 112 AAACATGCCAGAGGAAGAGTACTACACTTCACAAGGAGTACGTAACACCAAATCATACTT 171
|| |||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 125 AACCATGCCGGAGGAAGAGTACTACACTTCACAAGGAGTACGTAACAGCAAATCATACTT 184
Query 172 CGAAACACCAAACGGCAAGCTCTTCACTCAAAGCTTTTTACCATTAGATGGTGAAATCAA 231
|||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||
Sbjct 185 CGAAACACCAAACGGCAAGCTCTTCACTCAGAGCTTCTTACCATTAGATGGTGAAATCAA 244
Query 232 AGGCACTGTGTACATGTCTCACGGCTACGGATCCGATACAAGCTGGATGTTTCAGAAGAT 291
||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||
Sbjct 245 AGGCACTGTGTACATGTCTCATGGATACGGATCCGATACAAGCTGGATGTTTCAGAAGAT 304
Query 292 CTGCATGAGTTTCTCTACTTGGGGTTACGCTGTTTTCGCCGCCGATCTTCTCGGTCACGG 351
||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 305 CTGTATGAGTTTCTCTAGTTGGGGTTACGCTGTTTTCGCCGCCGATCTTCTCGGTCACGG 364
Query 352 CCGTTCTGACGGAATCCGCTGCTACATGGGTGATATGGAGAAAGTTGCAGCAACATCGTT 411
|||||| || || |||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 365 CCGTTCCGATGGTATCCGCTGCTACATGGGTGATATGGAGAAAGTTGCAGCAACATCATT 424
Query 412 GGCTTTCTTTAAGCATGTTCGTTGTAGTGAACCGTATAAGGATCTTCCGGCTTTTCTCTT 471
||||||||| |||||||||||||||||||| || ||||||||||||||||||||||| ||
Sbjct 425 GGCTTTCTTCAAGCATGTTCGTTGTAGTGATCCATATAAGGATCTTCCGGCTTTTCTGTT 484
Query 472 TGGTGAGTCCATGGGAGGTCTTGTGACGCTTTTGATGTATTTTCAATCGGAAGCTGATAC 531
|||||| || |||||||||||||||||||||||||||||||||||||||||| |||| ||
Sbjct 485 TGGTGAATCGATGGGAGGTCTTGTGACGCTTTTGATGTATTTTCAATCGGAACCTGAGAC 544
Query 532 TTGGACCGGTTTGATGTTTTCGGCTCCTCTCTTTGTTATCCCGGAGGATATGAAACCAAG 591
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 545 TTGGACCGGTTTGATGTTTTCGGCTCCTCTCTTTGTTATCCCTGAGGATATGAAACCAAG 604
Query 592 CAAGGCTCATCTTTTTGCTTATGGTCTCCTCTTTGGGTTGGCTGATACTTGGGCTGCAAT 651
|||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||
Sbjct 605 CAAGGCTCATCTTTTTGCTTATGGTCTCCTCTTTGGTTTGGCTGATACGTGGGCTGCAAT 664
Query 652 GCCTGATAATAAGATGGTTGGGAAGGCTATTAAGGACCCCGAAAAGCTTAAGATCATCGC 711
||| |||||||||||||||||||||||||| |||||||| ||||||||||||||||||||
Sbjct 665 GCCGGATAATAAGATGGTTGGGAAGGCTATCAAGGACCCTGAAAAGCTTAAGATCATCGC 724
Query 712 TTCTAACCCGCAAAGATACACGGGGAAGCCTAGAGTGGGAACAATGAGAGAGTTACTGAG 771
|||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct 725 TTCTAACCCGCAAAGATATACAGGGAAGCCTAGAGTGGGAACAATGAGAGAGTTACTGAG 784
Query 772 GAAGACTCAATACGTTCAGGAGAATTTCGGGAGAGTTACTATTCCGGTATTTACGGCACA 831
|||||||||||||||||||||||||||||||| ||||||||||||||| |||||||| ||
Sbjct 785 GAAGACTCAATACGTTCAGGAGAATTTCGGGAAAGTTACTATTCCGGTGTTTACGGCGCA 844
Query 832 CGGGACAGCGGATGGAGTAACATGTCCTACATCGTCGAAGCTATTATACGAAAAGGCATC 891
||||||||||||||||||||||||||||||||| ||||||||| |||||||||| || ||
Sbjct 845 CGGGACAGCGGATGGAGTAACATGTCCTACATCTTCGAAGCTACTATACGAAAAAGCGTC 904
Query 892 AAGCGCTGATAAAACATTGAAGATCTATGAAGGGATGTATCATTCGCTGATTCAAGGAGA 951
||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||
Sbjct 905 AAGCGCTGATAAAACGTTGAAGATCTATGAAGGGATGTATCACTCGCTGATTCAAGGAGA 964
Query 952 GCCTGACGAGAACGCTGAGATTGTGTTGAAGGATATGAGAGAATGGATCGATGA-AAGGG 1010
||||||||||||||||||||| || ||||||||||||||||| ||||||||||| ||||
Sbjct 965 GCCTGACGAGAACGCTGAGATAGTCTTGAAGGATATGAGAGAGTGGATCGATGAGAAGG- 1023
Query 1011 TTAAGAGGTATGGATCTAAAACCGCTTGAACAAACCTACATTTGTGTTACAAGAACTCGA 1070
|||||| ||||||||||||||||||||||||||| |||||||||||||||||||||| ||
Sbjct 1024 TTAAGAAGTATGGATCTAAAACCGCTTGAACAAAGCTACATTTGTGTTACAAGAACTTGA 1083
Query 1071 AGAGAAATGTATATTGATGTTATGATCAGTATCGTCGATTTGACTTGTTTTGGTGTTTGT 1130
||||||||||||||||||||||||||| |||||||||||||||||||||||| ||| |||
Sbjct 1084 AGAGAAATGTATATTGATGTTATGATCCGTATCGTCGATTTGACTTGTTTTGTTGTCTGT 1143
Query 1131 TGTAATCCAAGAACATGACTTTTCGGATGTCAGAACTTATA-TATCATGTATTACAGAA 1188
|||||||||||||||||| ||||| ||||| |||||||||| ||||||| |||||||||
Sbjct 1144 TGTAATCCAAGAACATGAATTTTCTGATGTAAGAACTTATAATATCATGGATTACAGAA 1202
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58333033290
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5