BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg474403
Length=1730
Score E
Sequences producing significant alignments: (Bits) Value
AT1G52770.1 | Symbols: | Phototropic-responsive NPH3 family pr... 2250 0.0
> AT1G52770.1 | Symbols: | Phototropic-responsive NPH3 family
protein | chr1:19655839-19657734 FORWARD LENGTH=1723
Length=1723
Score = 2250 bits (1218), Expect = 0.0
Identities = 1572/1738 (90%), Gaps = 44/1738 (3%)
Strand=Plus/Plus
Query 1 AAGAATTTGTTCTTTCCTTTGGAATTTTACCTTGGGAGTTATGATGAGACGACGACGTTT 60
||||||||| | |||||||||||||| |||||| |||| ||||||||| ||||||||||
Sbjct 1 AAGAATTTGCTGTTTCCTTTGGAATTGTACCTT-TGAGTCATGATGAGAGGACGACGTTT 59
Query 61 CAATGTAAGACTTTTCAAGAACAGAGCAAACGTAATTGCTTACACATGCACTCTCTATAA 120
||||||||||||||||||||||||||||||||||||||||| ||| || ||||||||
Sbjct 60 CAATGTAAGACTTTTCAAGAACAGAGCAAACGTAATTGCTT--ACA--CA--CTCTATAA 113
Query 121 AACTAACCCACCCCCACTTTACACACACTACACAAATTCCACCGTGAAAAATACCAAAGA 180
|||||| | | ||||||||||||||| | |||| ||||||||||||||| | ||||||
Sbjct 114 AACTAA-CTAAACCCACTTTACACACA-T-TACAACTTCCACCGTGAAAAA-AACAAAGA 169
Query 181 CATGGACGAAACATCTTCGCCGGAATCTGCCACCATCTCCACCAAATCTCCGTCAACCTC 240
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 170 CATGGACAAAACATCTTCGCCGGAATCTGCCACCATCTCCACCAAATCTCCGTCAACCTC 229
Query 241 CACCGGAAAAATGGAGTGTTCTTGGTTCGACGATGGTTGCATTCTTGACATTGATAATTT 300
||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||
Sbjct 230 CACCGGAAAAATGGAGTGTTCTTGGTTCGACGATGGTTGCATTCTTGGCATTGATTATTT 289
Query 301 CGTTAAAACCATTGCCGGAATCAAATCCAAAGGTGTTCGTCCCGATATCATCGGCTCCAT 360
||| |||||||| ||||||||||||||||||||||||||||| ||| |||| || |||||
Sbjct 290 CGTCAAAACCATCGCCGGAATCAAATCCAAAGGTGTTCGTCCTGATCTCATTGGATCCAT 349
Query 361 CATCGTTCATTACGCTTCT-ACGTGGCTCCCTGACCTTTCTGACGTCGTTATAAACCCCG 419
|||||||||||||||||| | |||||||||||||| || ||| |||| ||||| |||
Sbjct 350 CATCGTTCATTACGCTTCCCAA-TGGCTCCCTGACCTCTCCGACATCGTCCTAAACTCCG 408
Query 420 AAGAACC-GCAACTTCAGCCGCAACATCAATCGGAGAGCTTCTCTGTTACTGCATTTGTG 478
| || || ||||| |||||||| || || || |||||||||||||||||||| ||||||
Sbjct 409 ATGA-CCAGCAACCGCAGCCGCAGCAGCAGTCAGAGAGCTTCTCTGTTACTGCGTTTGTG 467
Query 479 ATGAAGAAACGTTTCTTTGTCGAGACTCTACTCGGAATCATCCCACCAGAGAAAGATTCC 538
||||||||||||| ||| ||||| |||||| |||||||||||||||| |||| |||||||
Sbjct 468 ATGAAGAAACGTTCCTTCGTCGAAACTCTAATCGGAATCATCCCACCTGAGAGAGATTCC 527
Query 539 GTTCCATGTGATTTCCTCCTCCGACTTCTCAGAACGGCGAACATGGTCGGAGCAGACACA 598
||||| ||||||||||||||||| || |||||||| |||||||||||||||||||| ||
Sbjct 528 GTTCCTTGTGATTTCCTCCTCCGTCTACTCAGAACCGCGAACATGGTCGGAGCAGATGCA 587
Query 599 AATTACAAGAAAGAGCTCGAGGAAAGGATTTCATGGCAGCTCGATCAAGCTTCCCTCAAG 658
||||||||| |||||||||| ||||||||||||||||| ||||||||||| ||||||
Sbjct 588 AATTACAAGGCGGAGCTCGAGGCGAGGATTTCATGGCAGCTTGATCAAGCTTCACTCAAG 647
Query 659 GAGCTAATGATACCTTCCTTCAGTCACTTGTGCGGGACATTGCTCGACGTTGAGCTCGTG 718
|||||||||||||||||||| |||||| ||| |||||||||||||| || |||||| ||
Sbjct 648 GAGCTAATGATACCTTCCTTTAGTCACACGTGTGGGACATTGCTCGATGTCGAGCTCATG 707
Query 719 TCTCGGTTGGTTAAGAAATTTGCTGGATTAGGCAACGAAGGAGTCAAATCCGGTGCTTCC 778
||||||||||||||||||||||||| |||| |||||||||||| |||||||||||||||
Sbjct 708 ACTCGGTTGGTTAAGAAATTTGCTGGCTTAGACAACGAAGGAGTTAAATCCGGTGCTTCC 767
Query 779 CTGGTTAAAGTGGCGAAGCTCGTCGACTCTTACTTAGCGGAAGCTGCCTTAGACGGCGAT 838
|| ||||||| ||||||||||| |||||||||||||| ||||| |||||||||||||||
Sbjct 768 CTAATTAAAGTAGCGAAGCTCGTGGACTCTTACTTAGCAGAAGCCGCCTTAGACGGCGAT 827
Query 839 TTAAGCCTCCCGGAGTTTATTTCCCTCG-CTGAAGCTCTCCCTAACCACGCTCGTGTAAC 897
|||| |||| |||||||||| || |||| | ||||||||||||||||| |||||||||||
Sbjct 828 TTAACCCTCTCGGAGTTTATATCTCTCGTC-GAAGCTCTCCCTAACCATGCTCGTGTAAC 886
Query 898 AGAAGATGGGTTATACCGCGCAATAGACACTTATCTCAAGGCACATCCTAAAGTGACCAA 957
||||||||||||||||| ||||| |||||||||||||||||||||||||| ||||||||
Sbjct 887 CGAAGATGGGTTATACCGTGCAATTGACACTTATCTCAAGGCACATCCTAACGTGACCAA 946
Query 958 GCAAGAAAGGAAGAGACTTTGTGGACTAGTAGACAGCAAGAAGCTATCAATGGAGGCATC 1017
|||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||
Sbjct 947 GCAAGAAAGGAAGAGACTTTGTGGACTAATAGACAGCAATAAGCTATCAATGGAGGCATC 1006
Query 1018 TCTTCACGCTGCACAGAACGATCGTTTACCGGTTAGAACTATTATTCAAGTTCTGTTCTC 1077
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1007 TCTTCACGCTGCACAGAACGATCGTTTACCGGTTAGAACTATTATTCAAGTTTTGTTCTC 1066
Query 1078 TGAGCAGGCAAAGCTGATTCATCGCAGCCACAACAACATTGAGTGGAGTGGCTCATCATT 1137
||| ||||||||||||| |||||||||||||||||| ||||| |||||||| ||||| ||
Sbjct 1067 TGAACAGGCAAAGCTGAGTCATCGCAGCCACAACAATATTGAATGGAGTGGTTCATCGTT 1126
Query 1138 CAGTGGCGCTAGGAGCAGCCCTAATCCTTCCGGTTCACACTACTCAGAGTCTGGCCCTGC 1197
|||||||| ||||||||||||||||||||| ||||||||||||||||| ||||| |||||
Sbjct 1127 CAGTGGCGTTAGGAGCAGCCCTAATCCTTCTGGTTCACACTACTCAGATTCTGGTCCTGC 1186
Query 1198 GCGGTGTATGTCCAAACGCGAGATAAATGTTCAGCAAGCAGAGATAAGAAGATTGAGAGA 1257
|||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1187 GCGGTGTACGTCCAAACGCGAGATTAATGTTCAGCAAGCAGAGATAAGAAGATTGAGAGA 1246
Query 1258 GGACATGGCGAAGCTTAAGAGCGAGTGTGAAGCGATGCAAATGCAGTTACATAAGGACAA 1317
|| ||||||||||||||| ||||||||||||||||||||| |||||||||||| |
Sbjct 1247 AGATATGGCGAAGCTTAAGTGCGAGTGTGAAGCGATGCAAACACAGTTACATAAG--CT- 1303
Query 1318 GCTGATTGATAAGAAAGGTACTTGTACTAGTGGTAATAAAGGtttttttAGGTGGAAGAA 1377
| | |||| |||||||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct 1304 G--G-TTGAGAAGAAAGGAACTTGTACTAGTGGGAATAAAGGTTTTTTTAGGTGGAAGAA 1360
Query 1378 GTTGGGATTTAGGAGCGGTTTAAGCGTTAGCGTTGTGGAAAACACAAATGGTGAAGATTT 1437
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct 1361 GTTGGGATTTAGGAGCGGTTTAAGCGTTAGCGTTGTGGAAAACACGAATGGTGAAGAGTT 1420
Query 1438 TGGTGATAATAGAGAAGGTGAAGAGTATGAGTATGTGACTCAAACACCTGGTAATATGAA 1497
|||| ||||| ||||||||||| | | |||||||||||||||||| |||||||||||||
Sbjct 1421 TGGTAATAATGGAGAAGGTGAAAATTTTGAGTATGTGACTCAAACGCCTGGTAATATGAT 1480
Query 1498 GACAAAGCTTGTTAAAGGAAGAACACCTTCTAGGTGGAGAAAATCTATGTCTTGAAAAAC 1557
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1481 GACAAAGCTTGTTAAAGGAAGAACACCTTCTAGGTGGAGAAAATCTATGTCTTGAAAAAC 1540
Query 1558 CGTCTTTATCGTCTTTAGTTTCTGTTCTTGTTTTTGCCTTGTTGTGCATTTGTTCTTCAG 1617
|||||||| || || ||||||||||| ||||||| |||||||||||||||||||
Sbjct 1541 CGTCTTTA--GT-TT------CTGTTCTTGTTGTTGCCTTCTTGTGCATTTGTTCTTCAG 1591
Query 1618 TCTTTGTTTCTGAATCTAA---------CATTTTGTAAGCTCATAAAGTCATATCGATGG 1668
||||||| ||||||||||| ||||||||||||||||| ||||||||||||||
Sbjct 1592 TCTTTGTGTCTGAATCTAATATTTTGTACATTTTGTAAGCTCATATAGTCATATCGATGG 1651
Query 1669 CTTGTGGGTCAAGTTTCTCAATGGTTTT-ATCTTCTCCGAA-ACTCTCTTAGATTCTT 1724
||||||||||||||||| |||||||||| ||||| ||| || ||||||||||| ||||
Sbjct 1652 CTTGTGGGTCAAGTTTCACAATGGTTTTTATCTTATCC-AAGACTCTCTTAGAATCTT 1708
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 85541728680
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5