BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg474409
Length=660
Score E
Sequences producing significant alignments: (Bits) Value
AT1G52830.1 | Symbols: IAA6, SHY1 | indole-3-acetic acid 6 | ch... 918 0.0
> AT1G52830.1 | Symbols: IAA6, SHY1 | indole-3-acetic acid 6 |
chr1:19672496-19673644 REVERSE LENGTH=829
Length=829
Score = 918 bits (497), Expect = 0.0
Identities = 611/666 (92%), Gaps = 8/666 (1%)
Strand=Plus/Plus
Query 1 AACAATAGAAGTGCTTGAGAG--GAGAAAAGTAACAAAACTTCATATAGCCAAAGGCAAA 58
||||| ||||||||||||||| | ||||||| |||||||||||||||||||| |||
Sbjct 1 AACAAGAGAAGTGCTTGAGAGAAAAAAAAAGTATCAAAACTTCATATAGCCAAATTTAAA 60
Query 59 Caaaaa-aaaaGAAGAGAAAGAAATAAATGGCAAAGGAAGGTCTAGGACTTGAGATCACA 117
|||||| |||| ||||| |||||||||||||||||||||||||||| ||| |||||||||
Sbjct 61 CAAAAAGAAAA-AAGAG-AAGAAATAAATGGCAAAGGAAGGTCTAGCACTCGAGATCACA 118
Query 118 GAGCTTCGATTGGGTCTTCCAGGAGATAATTATAGCGAAATCTCAATTTGGGGATCGA-- 175
||||||||||||||||||||||||||||||||||||||||| ||| | || |||||||
Sbjct 119 GAGCTTCGATTGGGTCTTCCAGGAGATAATTATAGCGAAATATCAGTATGCGGATCGAGT 178
Query 176 A-GAATAAGAAGAGGGTGCTCTCGGATATGATGACATCGTCATCGTTAAATACTGAGAAT 234
| ||| ||||||||||||||||||||||||||||| || ||| ||||| |||||||||||
Sbjct 179 AAGAAGAAGAAGAGGGTGCTCTCGGATATGATGACCTCATCAGCGTTAGATACTGAGAAT 238
Query 235 GAAAACGGCGTCGTTTCATCGGCTGAGGATGAATCTTTACCGGTGGTGAAGAGTCAGGCG 294
|||||| ||||||||||||| | ||| |||||||| | ||||| ||||||||||| |||
Sbjct 239 GAAAACAGCGTCGTTTCATCAGTTGAAGATGAATCACTGCCGGTTGTGAAGAGTCAAGCG 298
Query 295 GTGGGGTGGCCACCTGTGTGTTCTTATAGGAGACAGAAGAACAATGAGGAAGCATCGAAA 354
||||| |||||||||||||||||||| |||||| ||||||||||||||||||||||||||
Sbjct 299 GTGGGATGGCCACCTGTGTGTTCTTACAGGAGAAAGAAGAACAATGAGGAAGCATCGAAA 358
Query 355 GCGATAGGGTACGTGAAAGTGAGCATGGATGGTGTGCCATACTTGAGGAAGATTGACCTT 414
|| ||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 359 GCTATAGGCTACGTGAAAGTGAGCATGGATGGTGTGCCATACATGAGGAAGATTGACCTT 418
Query 415 GGTTCGAGCAACAGTTATAATAATCTAGCCACGGTTCTTGAGAATCTCTTCGGCTGTCTT 474
||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||
Sbjct 419 GGTTCGAGCAACAGTTATATTAATCTAGTCACGGTTCTTGAGAATCTCTTCGGCTGTCTT 478
Query 475 GGCCTAGGAGTAGCGAAGGAGGGTAAGAAATGCGAATACATTATTATATACGAAGACAAG 534
||| ||||||| ||||||||||||||||| || |||||||||||||||||||||||||||
Sbjct 479 GGCATAGGAGTGGCGAAGGAGGGTAAGAAGTGTGAATACATTATTATATACGAAGACAAG 538
Query 535 GATAGAGACTGGATGCTCGTTGGAGATGTACCTTGGCAGATGTTCAAAGAATCATGCAAG 594
|||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||
Sbjct 539 GATAGAGACTGGATGCTCGTCGGAGATGTACCTTGGCAGATGTTTAAAGAATCATGCAAG 598
Query 595 AGGCTTAGGATCGTGAAGAGATCAGATGCGACTGGTTTTGGCCTGCAGCGAGATTAATTA 654
||||| ||||||||||||||||||||||| ||||||||||| || |||| |||||||| |
Sbjct 599 AGGCTGAGGATCGTGAAGAGATCAGATGCAACTGGTTTTGGTCTCCAGCAAGATTAATCA 658
Query 655 TACTAG 660
||||||
Sbjct 659 TACTAG 664
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31898683345
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5