BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg474413
Length=1232
Score E
Sequences producing significant alignments: (Bits) Value
AT1G52890.1 | Symbols: ANAC019, NAC019 | NAC domain containing ... 1753 0.0
AT3G15500.1 | Symbols: ATNAC3, ANAC055, NAC055, NAC3 | NAC doma... 665 0.0
AT3G15510.1 | Symbols: ATNAC2, ANAC056, NARS1, NAC2 | NAC domai... 95.3 1e-18
> AT1G52890.1 | Symbols: ANAC019, NAC019 | NAC domain containing
protein 19 | chr1:19697004-19698482 REVERSE LENGTH=1280
Length=1280
Score = 1753 bits (949), Expect = 0.0
Identities = 1148/1241 (93%), Gaps = 26/1241 (2%)
Strand=Plus/Plus
Query 1 AAACATTATTGTCaaaaataagaaagaaagaaaaaaaaaaTGGGTATCCAAGAAACTGAC 60
|||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||
Sbjct 1 AAACATTATTGTCAAAAATAAGAAAGAAAG-AAAAAAATATGGGTATCCAAGAAACTGAC 59
Query 61 CCGTTAGCCCAGTTGAGCTTACCACCAGGTTTCCGATTTTACCCGACCGATGAAGAGCTT 120
|||||| | || ||||| |||||||| |||||||||||||||||||||||||||||||||
Sbjct 60 CCGTTAACGCAATTGAGTTTACCACCGGGTTTCCGATTTTACCCGACCGATGAAGAGCTT 119
Query 121 ATGGTTCAATATCTATGCAGAAAAGCAGCTGGTTACGATTTCCCTCTTCAGCTCATCGCC 180
|||||||||||||| || |||||||||||||||||||||||| |||||||||||||||||
Sbjct 120 ATGGTTCAATATCTCTGTAGAAAAGCAGCTGGTTACGATTTCTCTCTTCAGCTCATCGCC 179
Query 181 GAAATCGATCTTTACAAGTTTGATCCATGGGTTTTACCAAATAAGGCATTATTTGGAGAA 240
||||| ||||||||||| || ||||||||||||||||||||||| |||||||||||||||
Sbjct 180 GAAATAGATCTTTACAAATTCGATCCATGGGTTTTACCAAATAAAGCATTATTTGGAGAA 239
Query 241 AAAGAATGGTATTTTTTCAGTCCGAGGGATAGAAAATACCCAAACGGGTCAAGACCGAAT 300
||||||||||||||||| ||||| |||||||||||||| ||||||||||||||||| ||
Sbjct 240 AAAGAATGGTATTTTTTTAGTCCTAGGGATAGAAAATATCCAAACGGGTCAAGACCTAAC 299
Query 301 CGGGTTGCCGGGTCGGGTTACTGGAAGGCTACGGGTACGGATAAAATAATATCGACGGAA 360
||||||||||| |||||||| ||||| ||||||||||||||||||||||| |||||||||
Sbjct 300 CGGGTTGCCGGATCGGGTTATTGGAAAGCTACGGGTACGGATAAAATAATCTCGACGGAA 359
Query 361 GGACAAAGAGTTGGTATTAAAAAAGCTTTGGTGTTTTACATCGGAAAAGCTCCTAAAGGT 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 GGACAAAGAGTTGGTATTAAAAAAGCTTTGGTGTTTTACATCGGAAAAGCTCCTAAAGGT 419
Query 421 ACAAAAACCAATTGGATCATGCATGAGTATCGTCTCATTGAACCCTCTCGTAGAAACGGA 480
|| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 420 ACTAAAACCAATTGGATCATGCATGAGTATCGTCTCATTGAACCTTCTCGTAGAAACGGA 479
Query 481 AGCACAAAGTTGGATGATTGGGTTCTATGTCGAATATACAAAAAGCAATCAAGCGCACAA 540
||||| ||||||||||||||||||||||||||||||||||| ||||||||||| ||||||
Sbjct 480 AGCACTAAGTTGGATGATTGGGTTCTATGTCGAATATACAAGAAGCAATCAAGTGCACAA 539
Query 541 AAACAAGTTTACGAAAATGTAATCACGAGTGCTAGAGAATTCAGCAACAATGGTACTTCG 600
|||||||||||||| |||| |||| ||| ||||||||||||||||||||| |||||||||
Sbjct 540 AAACAAGTTTACGATAATGGAATCGCGAATGCTAGAGAATTCAGCAACAACGGTACTTCG 599
Query 601 TCAACAACGTCGTCTTCTTCTCACTTTGAAGACGTTCTTGATTCGTTTCATCATGAGATC 660
|| || ||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 600 TCCACGACGTCGTCTTCTTCTCACTTTGAAGACGTTCTTGATTCGTTTCATCAAGAGATC 659
Query 661 GACAACAGGAATTTCCAGTTTTCTAATCCAAACCGGTTCTCGTCGCTCAGACCGGACATA 720
|||||||| ||||||||||||||||| |||||||| |||||||||||||||||||| ||
Sbjct 660 GACAACAGAAATTTCCAGTTTTCTAACCCAAACCGCATCTCGTCGCTCAGACCGGACTTA 719
Query 721 ACCGAACAGAAAACCGGGTTCAACGGTCTTGTGGATACTTCCAACTTCGATTGGGGTAGT 780
||||||||||||||||||||| ||||||||| ||||||||| ||||||||||||| ||||
Sbjct 720 ACCGAACAGAAAACCGGGTTCCACGGTCTTGCGGATACTTCTAACTTCGATTGGGCTAGT 779
Query 781 TTTGCTGGAAATGTTGAGCACAATAATTACTCGGTACCGGAACTCGGACTGAGTCATGTT 840
||||| || ||||||||||| ||||| ||||||||||||||||||| |||||||||||
Sbjct 780 TTTGCCGGTAATGTTGAGCATAATAA---CTCGGTACCGGAACTCGGAATGAGTCATGTT 836
Query 841 GTTCCTAATCTCGAGTACAATTGTAGCTACCCT-AAGACGGAGGAGGAAGTCGAGAGCAT 899
|||||||||||||||||||| ||| |||||| | |||||||||||||||||||||||||
Sbjct 837 GTTCCTAATCTCGAGTACAACTGTGGCTACC-TGAAGACGGAGGAGGAAGTCGAGAGCAG 895
Query 900 TCACGGGTTTAACAACTCGGGCGAGTTGGCTCAAAAGGGTTATGGTGTTGACTCGGTCGG 959
|||||||||||| |||||||||||||| ||||||||||||||||||||||||||| |
Sbjct 896 TCACGGGTTTAATAACTCGGGCGAGTTAGCTCAAAAGGGTTATGGTGTTGACTCG-T--- 951
Query 960 GTTTGGGTATTCGGGGCAAGTTGGTGGGTTCGGGTTTATGTGATGATGCAATGCTGACGC 1019
|| |||||||||||||||||||||||||| ||||||||||||||||| |||||||||||
Sbjct 952 -TT-GGGTATTCGGGGCAAGTTGGTGGGTTTGGGTTTATGTGATGATGAAATGCTGACGC 1009
Query 1020 AGTAAAAATAAGTCGTTAATTTTTGTCCCGTGGCAAATCTTAT--GTATTTGGATTTCAA 1077
| ||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||
Sbjct 1010 AATAAAAATAAGTCGTTAATTTTTGTCCCGTGGCAAATCTTATATGTATTTGAATTTCAA 1069
Query 1078 TTCTTTTGTGTTTAGAGGCAGATTCATAGATTTAAATTTAGTAGATTTGTAATCTATCAT 1137
|||||||| ||| ||||| ||| ||||||||||| || ||||||||||||||| ||||
Sbjct 1070 TTCTTTTGGGTTAAGAGGGAGACTCATAGATTTAGAT---GTAGATTTGTAATCTTTCAT 1126
Query 1138 GCCTAGAAAATTTGACGAATAGATTTTGTAACTTT-TGTTTGTTG-T-T--G-TTAATCT 1191
|| ||||||||||||||||||||||| |||||||| | ||||||| | | | ||| |||
Sbjct 1127 GCATAGAAAATTTGACGAATAGATTTCGTAACTTTAT-TTTGTTGCTGTTTGGTTA-TCT 1184
Query 1192 TTTGTATTGGTAGGAATTTAGTGGATTGAAATTGCATATTG 1232
|| ||||||||| |||||||||||||||||||||||||||
Sbjct 1185 TT-GTATTGGTATAAATTTAGTGGATTGAAATTGCATATTG 1224
> AT3G15500.1 | Symbols: ATNAC3, ANAC055, NAC055, NAC3 | NAC domain
containing protein 3 | chr3:5234617-5236088 FORWARD LENGTH=1274
Length=1274
Score = 665 bits (360), Expect = 0.0
Identities = 548/638 (86%), Gaps = 16/638 (3%)
Strand=Plus/Plus
Query 36 aaaaaTGGGTATCCAAGAAAC-TGACCCGTTAGCCCAGTTGAGCTTACCACCAGGTTTCC 94
|||||||||| |||||| | | ||||||||||||||| ||||||||||| || ||||| |
Sbjct 111 AAAAATGGGTCTCCAAG-AGCTTGACCCGTTAGCCCAATTGAGCTTACCGCCGGGTTTTC 169
Query 95 GATTTTACCCGACCGATGAAGAGCTTATGGTTCAATATCTATGCAGAAAAGCAGCTGGTT 154
| ||||| ||||| || |||||||| |||||| ||||||| || |||||||| || |||
Sbjct 170 GGTTTTATCCGACTGACGAAGAGCTGATGGTTGAATATCTCTGTAGAAAAGCCGCCGGTC 229
Query 155 ACGATTTCCCTCTTCAGCTCATCGCCGAAATCGATCTTTACAAGTTTGATCCATGGGTTT 214
|||| ||| |||| |||||||| || ||||||||||| ||||||||||||||||||||||
Sbjct 230 ACGACTTCTCTCTCCAGCTCATAGCTGAAATCGATCTCTACAAGTTTGATCCATGGGTTT 289
Query 215 TACCAAATAAGGCATTATTTGGAGAAAAAGAATGGTATTTTTTCAGTCCGAGGGATAGAA 274
|||||| |||||| ||||| || ||||||||||||||||||||||| ||||||||||| |
Sbjct 290 TACCAAGTAAGGCGTTATTCGGTGAAAAAGAATGGTATTTTTTCAGCCCGAGGGATAGGA 349
Query 275 AATACCCAAACGGGTCAAGACCGAATCGGGTTGCCGGGTCGGGTTACTGGAAGGCTACGG 334
| || ||||||||||||||||| ||||||||||||||||||||||| ||||| || || |
Sbjct 350 AGTATCCAAACGGGTCAAGACCTAATCGGGTTGCCGGGTCGGGTTATTGGAAAGCCACCG 409
Query 335 GTACGGATAAAATAATATCGACGGAAGGACA-AAGAGTTGGTATTAAAAAAGCTTTGGTG 393
||||||||||| | || |||||||| ||| | |||||||||||| || ||||||||||||
Sbjct 410 GTACGGATAAAGTTATCTCGACGGAGGGA-AGAAGAGTTGGTATCAAGAAAGCTTTGGTG 468
Query 394 TTTTACATCGGAAAAGCTCCTAAAGGTACAAAAACCAATTGGATCATGCATGAGTATCGT 453
|||||||| ||||||||||| ||||| || |||||||||||||| ||||||||||| |||
Sbjct 469 TTTTACATTGGAAAAGCTCCAAAAGGAACCAAAACCAATTGGATTATGCATGAGTACCGT 528
Query 454 CTCATTGAACCCTCTCGTAGAAACGGAAGCACAAAG-TTGGATGATTGGGTTCTATGTCG 512
||||| |||||||||||| |||| |||||||| ||| ||| ||||||||||| |||||||
Sbjct 529 CTCATCGAACCCTCTCGTCGAAATGGAAGCACCAAGCTTG-ATGATTGGGTTTTATGTCG 587
Query 513 AATATACAAAAAGCAATCAAGCGCACAAAAACAAGTTTACGAA-AATGTAATCACGAGTG 571
|||||||||||||||| |||||||||||||||||| |||| || ||| |||| |||||||
Sbjct 588 AATATACAAAAAGCAAACAAGCGCACAAAAACAAGCTTAC-AATAATCTAATGACGAGTG 646
Query 572 CTAGAGAATTCAGCAACAATGGTACTTCGTCAACAACGTCGTCTTCTTC-TCACTTTGAA 630
| | |||| ||||||||||||| | |||| ||| | || || ||| | ||| | ||
Sbjct 647 GTCGTGAATACAGCAACAATGGT--T-CGTCGACATCTTCTTCGTCT-CATCAATACGAC 702
Query 631 GACGTTCTTGATTCGTTTCATCATGAGATCGACAACAG 668
|||||||| || ||||| ||| ||||| ||||||||
Sbjct 703 GACGTTCTCGAGTCGTTGCAT---GAGATTGACAACAG 737
> AT3G15510.1 | Symbols: ATNAC2, ANAC056, NARS1, NAC2 | NAC domain
containing protein 2 | chr3:5243510-5245382 FORWARD LENGTH=1626
Length=1626
Score = 95.3 bits (51), Expect = 1e-18
Identities = 207/279 (74%), Gaps = 23/279 (8%)
Strand=Plus/Plus
Query 78 CTTACCACCAGGTTTCCGATTTTACCCGACCGATGAAGAGCTTATGGTTCAATATCT-AT 136
||| || ||||| ||||| ||| |||| ||||| ||||||||| | ||||| || || |
Sbjct 235 CTT-CCTCCAGGCTTCCGGTTTCACCCTACCGACGAAGAGCTTGTTGTTCACTACCTCAA 293
Query 137 GCAGAAAAGCAG-CT-GGTTACGATTTCCCTCTTCAG-C-TCATCGCCGAAATCGATCTT 192
| | ||||||| || | | | ||| ||| || | | ||||||||||| |||||||
Sbjct 294 AC-GCAAAGCAGCCTCTGCT-C-CTTTACCT-GTC-GCCATCATCGCCGAAGTCGATCTC 348
Query 193 TACAAGTTTGATCCATGGG-TTTTACCAAATAAGGCATTATTTGGAGAAAAAGAATGGTA 251
|| || ||||||||||||| || || ||| |||| ||||||||| ||||||||||
Sbjct 349 TATAAATTTGATCCATGGGAACTT-CCCGCTAAAGCATCGTTTGGAGAACAAGAATGGTA 407
Query 252 -TTTTTTCAGTCCGA-GGGATAGAAAATACCCAAACGG-GTCAAGACCGAATC-GGGTTG 307
|| ||| ||||| | | ||| | || || |||||||| | ||||||| || | | | |
Sbjct 408 CTTCTTT-AGTCC-ACGAGATCGGAAGTATCCAAACGGAG-CAAGACC-AAACAGAG-CG 462
Query 308 CCG-GGTCGGGTTACTGGAAGGCTACGGGTACGGATAAA 345
|| || ||||| ||||| || || ||||| ||||||
Sbjct 463 GCGACTTCAGGTTATTGGAAAGCGACCGGTACAGATAAA 501
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60541857270
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5