BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg474415
Length=696
Score E
Sequences producing significant alignments: (Bits) Value
AT1G52910.1 | Symbols: | Protein of unknown function (DUF1218)... 996 0.0
AT3G15480.1 | Symbols: | Protein of unknown function (DUF1218)... 488 3e-137
> AT1G52910.1 | Symbols: | Protein of unknown function (DUF1218)
| chr1:19708057-19709323 FORWARD LENGTH=780
Length=780
Score = 996 bits (539), Expect = 0.0
Identities = 658/711 (93%), Gaps = 26/711 (4%)
Strand=Plus/Plus
Query 1 CTTCGAGGGAAAGAGAAAGAAGAATAACAAGAAAAGCTCTCTGAGAACAATCTCCTCAAT 60
||||||||||||||| | ||| || |||||||||||||||| |||| || | | ||||
Sbjct 7 CTTCGAGGGAAAGAG--A-AAG-ATCACAAGAAAAGCTCTCTCAGAATAA--T-CGCAAT 59
Query 61 GGCTTCAAAGCTCGTGATCATCATTGTGTTCATTCTAGATCTCATTGCTGTTGGATTAGC 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 60 GGCTTCAAAGCTCGTGATCATCATTGTGTTCATTCTAGATCTCATTGCTGTTGGATTAGC 119
Query 121 CATTGCCGCCGAACAACGAAGAAGTGTCGGTAAGGTTGTTCCGGACAAG-GAGAAGG-AT 178
|||||| ||||||||| |||||||||||||||||||||||||||| | ||||||| ||
Sbjct 120 CATTGCTGCCGAACAAAGAAGAAGTGTCGGTAAGGTTGTTCCGGA-TGGTGAGAAGGAAT 178
Query 179 TATGAGTATTGTGAGTATGGCTCTGACATAGCTACAAGTTATGGAGCTGGTGCCTTTGTG 238
| |||| |||||||||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 179 T-TGAGCATTGTGAGTATGGCTCAGACATAGCTACAAGTTATGGAGCTGGTGCATTTGTG 237
Query 239 CTTCTCTTCACTAGTCAAGTCATTATTATGGTGGCTAGCCGGTGTTTCTGTTGCGGCAAA 298
|||||||||| ||||||||||||||||||||||||||| ||||||||||| |||||||||
Sbjct 238 CTTCTCTTCATTAGTCAAGTCATTATTATGGTGGCTAGTCGGTGTTTCTGCTGCGGCAAA 297
Query 299 GCTCTTAACCCCGGTGGTTCAAGAGCTTGTGCCATTATGCTCTTCCTCATTTGCTGGGTG 358
|||||||| |||||||||||||||||||||| ||||||||||||||| ||||||||||||
Sbjct 298 GCTCTTAAACCCGGTGGTTCAAGAGCTTGTGGCATTATGCTCTTCCTTATTTGCTGGGTG 357
Query 359 TTTTTCTTGATTGCTGAGATATGTTTGCTCGCGGGATCAATCAGAAACGCGTACCACACT 418
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 358 TTTTTCTTGATTGCTGAGGTATGTTTGCTCGCGGGATCAATCAGAAACGCGTACCACACT 417
Query 419 AAGTACAGAAGGATGTGGAACGTCGAAGACCCTCCAAGCTGTGAAGTGATCCGTAAAGGA 478
| ||||||||||||||||||| ||||| ||||||| ||||||||||||||||||||||||
Sbjct 418 ACGTACAGAAGGATGTGGAACATCGAAAACCCTCCTAGCTGTGAAGTGATCCGTAAAGGA 477
Query 479 GTGTTTGCTGCTGGTGCTTCCTTTGCTCTCTTCACTGCTATTGTCTCTCAGTTCTATTAC 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 478 GTGTTTGCTGCTGGTGCTTCCTTTGCTCTCTTCACTGCTATTGTCTCTCAGTTCTATTAC 537
Query 539 GTCTCCTATTCTCGTGCCC-AGGATGGTTACCGCAACCC-ACATTACTAGTGAGT-G--A 593
|||||||||||||||||| || | ||||||| ||||| ||||||||||||||| | |
Sbjct 538 ATCTCCTATTCTCGTGCCCGAG-ACGGTTACCA-AACCCCACATTACTAGTGAGTAGTGA 595
Query 594 GATCCAGAACAAGAAAAGCTAAACCCTGAACGAGTTTGTCCA-----C---TCACTGATC 645
|||||||||||||||||||||||||||||| ||||||||||| | |||||||||
Sbjct 596 GATCCAGAACAAGAAAAGCTAAACCCTGAATGAGTTTGTCCATTTATCCACTCACTGATC 655
Query 646 AATAGGATATTAAAATTTGATGATGTTAGTGATTTTGCTTCTTGCTTGTAT 696
|||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 656 AATAGGATATTAAAATTTGATGATGTTAGTCATTTTGCTTCTTGCTTGTAT 706
> AT3G15480.1 | Symbols: | Protein of unknown function (DUF1218)
| chr3:5226248-5227789 REVERSE LENGTH=892
Length=892
Score = 488 bits (264), Expect = 3e-137
Identities = 441/525 (84%), Gaps = 18/525 (3%)
Strand=Plus/Plus
Query 39 CTCTGAGAACAATCTCCTCAATGGCTTCAAAGCTCGTGA-TCATCATTGTGTTCATTCTA 97
||||||||| |||| | |||||||||| ||||| || | | || |||||||| || ||
Sbjct 106 CTCTGAGAA-AATC-CAGCAATGGCTTCGAAGCTTGT-AGTGATAATTGTGTTTATCCTC 162
Query 98 GATCTCATTGCTGTTGGATTAGCCATTGCCGCCGAACA-ACGAAGAAGTGTCGGTAAGGT 156
|||||||| || ||||| ||||||||||||||||| || | ||||||||||||| |||||
Sbjct 163 GATCTCATCGCCGTTGGGTTAGCCATTGCCGCCGAGCAGA-GAAGAAGTGTCGGCAAGGT 221
Query 157 TGTTCCGGACAAG-GAGAAGGATTATGAGTATTGTGAGTATGGCT-CTGACATAGCTACA 214
|| | ||| || || ||| | ||||| || |||| |||||| | ||||||| ||||||
Sbjct 222 TGAAACAGAC-AGAGACAAGCAATATGATTACTGTGTGTATGG-TACTGACATTGCTACA 279
Query 215 AGTTATGGAGCTGGTGCCTTTGTGCTTCTCTTCACT-AGTCAAGTCATTATTATGG-TGG 272
||||||||||||||||| ||||| |||||||| | || |||||| ||||||||| | |
Sbjct 280 AGTTATGGAGCTGGTGCATTTGTTCTTCTCTT-TGTAAGCCAAGTCCTTATTATGGCT-G 337
Query 273 CTAGCCGGTGTTTCTGTTGCGGCAAAG-CTCTTAACCCCGGTGGTTCAAGAGCTTGTGCC 331
|||| || || |||||||| || |||| |||||||||| || ||||||||||||||||||
Sbjct 338 CTAGTCGTTGCTTCTGTTGTGG-AAAGTCTCTTAACCCTGGCGGTTCAAGAGCTTGTGCC 396
Query 332 ATTATGCTCTTCCTCATTTGCTGGGTGTTTTTCTTGATTGCTGAGATATGTTTGCTCGCG 391
||||| |||||||||||||||||||||||||||||||| |||||||| |||||||| |||
Sbjct 397 ATTATTCTCTTCCTCATTTGCTGGGTGTTTTTCTTGATCGCTGAGATGTGTTTGCTTGCG 456
Query 392 GGATCAATCAGAAACGCGTACCACACTA-AGTACAGAAGGATGTGGAACGTCGAAGACCC 450
| |||||||||||| ||||||||||| | |||| |||| ||||||||| || ||||| ||
Sbjct 457 GCATCAATCAGAAATGCGTACCACAC-ACAGTATAGAAAGATGTGGAAAGTTGAAGATCC 515
Query 451 TCCAAGCTGTGAAGTGATCCGTAAAGGAGTGTTTGCTGCTGGTGCTTCCTTTGCTCTCTT 510
|||||||||||||| || | |||||||| ||||| ||||||||| | || | |||||
Sbjct 516 ACCAAGCTGTGAAGTTATAAGGAAAGGAGTTTTTGCAGCTGGTGCTGCATTCACACTCTT 575
Query 511 CACTGCTATTGTCTCTCAGTTCTATTACGTCTCCTATTCTCGTGC 555
||| || ||||||||||||||||| ||||| | ||| ||||||||
Sbjct 576 CACCGCCATTGTCTCTCAGTTCTACTACGTTTGCTACTCTCGTGC 620
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33707112637
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5