BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg474417
Length=1076
Score E
Sequences producing significant alignments: (Bits) Value
AT1G52930.1 | Symbols: | Ribosomal RNA processing Brix domain ... 1640 0.0
AT3G15460.1 | Symbols: | Ribosomal RNA processing Brix domain ... 972 0.0
AT2G06822.1 | Symbols: | Pseudogene of AT2G06822 | chr2:272870... 283 2e-75
> AT1G52930.1 | Symbols: | Ribosomal RNA processing Brix domain
protein | chr1:19711237-19713230 FORWARD LENGTH=1114
Length=1114
Score = 1640 bits (888), Expect = 0.0
Identities = 1027/1092 (94%), Gaps = 18/1092 (2%)
Strand=Plus/Plus
Query 1 aaaaaaaaaaaaaTGGGGAAGAAGCGGAAGCACAGTGAGACGGAAGCTCCGGCGCCGGTG 60
||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 13 AAAAACAAAAAAATGGGGAGGAAGCGGAAGCACAGTGAGACGGAAGCTCCGGCGCCGGTG 72
Query 61 AAAAAGAACGACGAGTCTGCTCCGGAGAGACCCAAAAGGACTTTATTGGGATGGAAAGAT 120
||||||| ||| ||| |||||||||| ||||||||||||||| |||||||||||||||||
Sbjct 73 AAAAAGAGCGATGAGCCTGCTCCGGATAGACCCAAAAGGACTCTATTGGGATGGAAAGAT 132
Query 121 AAGAGTGAAGGTGAAGCTGAGAAATCTAAAGCTTTGTCTTCATCTGGATTCAGGAATAAA 180
|||||||||||||||||||||||| ||||||||||| ||||||||||||||| ||| |||
Sbjct 133 AAGAGTGAAGGTGAAGCTGAGAAAGCTAAAGCTTTGACTTCATCTGGATTCAAGAACAAA 192
Query 181 GAGAAGGTTTTGGTTACTTGTTCTCGTCGAATTAGTTTCAGGTATCGGAGTTTGATGTTG 240
|||||||||||||| |||||||||||||| || |||||||||||||||||||||||||||
Sbjct 193 GAGAAGGTTTTGGTGACTTGTTCTCGTCGTATCAGTTTCAGGTATCGGAGTTTGATGTTG 252
Query 241 AACATGGTTTCACTTCTGCCACACTGTAAGAAGGATAGTAAAGTTGAAGCTAAGAGTAGC 300
||||| ||||||||||| |||||||||||||| || |||||||||||||| |||||||||
Sbjct 253 AACATTGTTTCACTTCTACCACACTGTAAGAAAGACAGTAAAGTTGAAGCAAAGAGTAGC 312
Query 301 AAAGGCGCGACTTTGAATGAGCTTATTGAGCTTAAGGGA-TCTAATTCCTGTTTGTTTTT 359
||||||||||||||||||||||| ||||||||||| | | ||||||||||| ||||| ||
Sbjct 313 AAAGGCGCGACTTTGAATGAGCTCATTGAGCTTAA-GAATTCTAATTCCTGCTTGTTCTT 371
Query 360 CGAGTGTAGGAAACATAAGGATCTTTACATGTGGATGGTCAAATCCCCTAATGGACCATC 419
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 372 CGAGTGTAGGAAACATAAAGATCTTTACATGTGGATGGTCAAATCCCCTAATGGACCATC 431
Query 420 TGTGAAGTTTTTGGTTAAAGCTGTGCACGCGATGGAAGAGCTGAAACTCACTGGAAATCA 479
|||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||
Sbjct 432 TGTGAAGTTTTTGGTTAAAGCTGTGCACGCAATGGAAGAGATGAAACTCACTGGAAATCA 491
Query 480 TCTAAAAGGTTCACGTCCACTTTTGACATTCTCATCCAATTTTGATAAAGATGCGCACTG 539
||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 492 TCTCAAAGGGTCACGTCCACTTTTGACATTCTCATCCAATTTTGATAAAGATGCGCACTG 551
Query 540 GAAACTCTTGAAGGAGATGCTTACTCAGGTCTTTGGAATTCCCAAGGAACACAGGAAATC 599
||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||
Sbjct 552 GAAACTCTTGAAGGAGATGCTTACTCAGGTCTTCGGAATTCCTAAGGAACACAGGAAATC 611
Query 600 TAAGCCTTACCATGACCATGTATTTGTCTTTTCCATTGTTGATGAGCATATATGGTTCCG 659
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 612 TAAGCCTTACCATGACCATGTATTTGTCTTTTCAATTGTTGATGAGCATATATGGTTCCG 671
Query 660 GAATTACCAGATTTCGGTTCCTCACAATGAATCAGATAAAATTGCAAAAGGCGGCCTGGA 719
||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||
Sbjct 672 AAATTACCAGATTTCGGTTCCTCACAATGAGTCAGATAAAATTGCAAAAGGTGGCCTGGA 731
Query 720 TAAAATGACCCTTATCGAGGTTGGTCCAAGGTTTTGTCTGAATCCAATCAAGATATTCG- 778
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 732 TAAAATGACCCTTATCGAGGTTGGTCCAAGGTTTTGTCTGAATCCAATCAAGATATTCGC 791
Query 779 GAGGCAGCTTTGGAGGTCCAACTCTTTACGAGAACCCGTTATACGTATCTCCAAACCAGA 838
| ||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||
Sbjct 792 G-GGCAGCTTTGGAGGTCCTACTCTTTATGAGAACCCGTTATACGTATCTCCAAACCAGA 850
Query 839 TTCGAGCACTGGAGAAGAGAAATAAAGCTGGGAAATTTGCTAAGAAGATCAAGGCGAAGA 898
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 851 TTCGAGCATTGGAGAAGAGAAATAAAGCTGGGAAATTTGCTAAGAAGATCAAGGCGAAGA 910
Query 899 CTAGGAAAAAGATGCATGAGCTCTCAAACCCGTTGGAGCCTGATGAGTTTGCAGATATGT 958
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 911 CGAGGAAAAAGATGCATGAGCTCTCAAACCCGTTGGAGCCTGATGAGTTTGCAGATATGT 970
Query 959 GGAAAGATGATGAATGATCAGAATTCAGGAAAATTGTATCAGTTCACAtt-t-tt--t-t 1013
|||||||||||||||||||||| |||||||||||||||||| ||||| || | || | |
Sbjct 971 GGAAAGATGATGAATGATCAGAGTTCAGGAAAATTGTATCACTTCACTTTGTCTTACTGT 1030
Query 1014 t-t----GTCTTA-CTT-TTT-CGCTCAGGATCAAACAGAATCAA-GTTTTGTCTTGCAA 1064
| | || || ||| ||| |||||| |||||||| || ||| ||||||||||||||
Sbjct 1031 TATTTTAGTTTTGTCTTGTTTTCGCTCACTATCAAACATAAACAAAGTTTTGTCTTGCAA 1090
Query 1065 TGATATGTTTCT 1076
||||||||||||
Sbjct 1091 TGATATGTTTCT 1102
> AT3G15460.1 | Symbols: | Ribosomal RNA processing Brix domain
protein | chr3:5214084-5216261 REVERSE LENGTH=1216
Length=1216
Score = 972 bits (526), Expect = 0.0
Identities = 832/976 (85%), Gaps = 35/976 (4%)
Strand=Plus/Plus
Query 8 aaaaaaTGGGGAAGAAGCGGAAGCACAGTGAGAC-GGAAGCTCCGGCGCCGGTGAAAAAG 66
|||||||||||| |||| | |||||||| ||||| | | | |||| ||||| |
Sbjct 69 AAAAAATGGGGAGGAAGAGAAAGCACAGCGAGACTGTTA-CGGCGGCACCGGT------G 121
Query 67 AACGACGAGTCTGCTCCGGAGAGACC-CAAAAGGACT-TTATTGGGATGGAAAGATAAG- 123
|| | || ||||||||||||||||| | |||||||| || ||||| ||||||||||||
Sbjct 122 AA-G--GATTCTGCTCCGGAGAGACCTC-AAAGGACTCTT-TTGGGTTGGAAAGATAAGA 176
Query 124 AGTGAAGGTGAAGCTGAGAAATCTAAAGCTTTGTCTTCATCTGGATTCAGGAATAAAGAG 183
|| ||| || |||||||| |||||| || || | | |||| ||||||||||||||||
Sbjct 177 AG-GAA---GATGCTGAGAACTCTAAACCTGCGTATGCGTCTGTATTCAGGAATAAAGAG 232
Query 184 AAGGTTTTGGTTACTTGTTCTCGTCGAATTAGTTTCAGGTATCGGA-GTTTGATGTTGAA 242
|||||| | ||||||||||| ||||| || | ||||||||||| || ||||||||||||
Sbjct 233 AAGGTTCTCGTTACTTGTTCCCGTCGGATCAATTTCAGGTATC-GACATTTGATGTTGAA 291
Query 243 CATGGTTTCACTTCTGCCACACTGTAAGAAGGATAGTAAAGTTGAAGCTAAGAGTAGCAA 302
|||||| |||||| | || |||||||||||||||||||| || ||||||||||| || |
Sbjct 292 CATGGTGTCACTTTTACCTCACTGTAAGAAGGATAGTAAGGTAGAAGCTAAGAGCAGTAG 351
Query 303 AGGCGCGACT-TTGAATGAGCTTATTGAGCTTAAGGGATCTAATTCCTGTTTGTTTTTCG 361
||| || ||| || |||||||| || ||||||||||| ||| |||||||||||||||||
Sbjct 352 AGGTGCCACTCTT-AATGAGCTCATCGAGCTTAAGGGCTCTTCTTCCTGTTTGTTTTTCG 410
Query 362 AGTGTAGGAAACATAAGGATCTTTACATGTGGATGGTCAAATCCCCTAATGGACCATCTG 421
|||||||||| || || |||||||||||||||||||| || |||||| |||||| || |
Sbjct 411 AGTGTAGGAAGCACAAAGATCTTTACATGTGGATGGTGAAGTCCCCTGGTGGACCTTCCG 470
Query 422 TGAAGTTTTTGGTTAAAGCTGTGCACGCGATGGAAGAGCTGAAACTCACTGGAAATCATC 481
| ||||| |||||||| ||||| ||| | ||||| |||||||||||||||||||||||||
Sbjct 471 TTAAGTTCTTGGTTAATGCTGTTCACACAATGGAGGAGCTGAAACTCACTGGAAATCATC 530
Query 482 TAAAAGGTTCACGTCCACTTTTGACATTCTCATCCAATTTTGATAAA-GATGCGCACTGG 540
| ||||||||||| ||||||||||||||||||||||||||||| ||| ||||| ||||||
Sbjct 531 TGAAAGGTTCACGCCCACTTTTGACATTCTCATCCAATTTTGA-AAACGATGCACACTGG 589
Query 541 AAACT-CTTGAAGGAGATGCTTA-CTCAGGTCTTTGGAATTCCCAAGGAACACAGGAAAT 598
||||| || ||| |||||| ||| ||||| | |||||||||||| ||| ||| ||||| |
Sbjct 590 AAACTTCT-GAAAGAGATG-TTAACTCAGATTTTTGGAATTCCCGAGGGACATAGGAAGT 647
Query 599 CTAAGCCTTACCATGACCATGTATTTGTCTTT-TCCATTGTTGATGAGCATATATGGTTC 657
|||| ||||||||||||||||| ||||| ||| |||||||||||||| ||||||||||||
Sbjct 648 CTAAACCTTACCATGACCATGTGTTTGT-TTTCTCCATTGTTGATGACCATATATGGTTC 706
Query 658 CGGAATTACCAGATTTCGGTTCCTCACAATGAATCAGATAAAATTGCAAAAGGCGGCCTG 717
|| ||||||||||| ||||| ||||| || || ||||| || |||||| ||||| |||
Sbjct 707 CGTAATTACCAGATATCGGTACCTCATAACGAGTCAGACAAGATTGCACGAGGCGATCTG 766
Query 718 GATAAAATGACCCTTATCGAGGTTGGTCCAAGGTTTTGTCTGAATCCAATCAAGATATTC 777
||||||||||| ||||| ||||||||||||||||||||| | |||||||| ||||||||
Sbjct 767 GATAAAATGACTCTTATTGAGGTTGGTCCAAGGTTTTGTTTAAATCCAATTAAGATATTT 826
Query 778 GGAGGCAGCTTTGGAGGTCCAACTCTTTACGAGAACCCGTTATACGTATCTCCAAACCAG 837
|||||||||||||||||| |||| |||||||||||||| || || |||||||||||||||
Sbjct 827 GGAGGCAGCTTTGGAGGTACAACGCTTTACGAGAACCCATTCTATGTATCTCCAAACCAG 886
Query 838 ATTCGAGCACTGGAGAAGAGAAATAAAGCTGGGAAATTTGCTAAGAAGATCAAGGCGAAG 897
|||||||| ||||||| ||||||||||||||||||||||||||||| || ||||| ||
Sbjct 887 ATTCGAGCTTTGGAGAAAAGAAATAAAGCTGGGAAATTTGCTAAGAAAATAAAGGCAAAA 946
Query 898 ACTAGGAA-AAAGATGCATGAGCTCTCAAACCCGTTGGAGCCTGATGAGTTTGCAGATAT 956
|| || || |||||||||||| ||||||||||| |||||||||||||| ||| |||| ||
Sbjct 947 ACAAG-AAGAAAGATGCATGAACTCTCAAACCCATTGGAGCCTGATGAATTTACAGACAT 1005
Query 957 GTGGAAAGATGA-TGA 971
|||||| ||||| |||
Sbjct 1006 GTGGAACGATGAATGA 1021
> AT2G06822.1 | Symbols: | Pseudogene of AT2G06822 | chr2:2728708-2729075
REVERSE LENGTH=276
Length=276
Score = 283 bits (153), Expect = 2e-75
Identities = 248/290 (86%), Gaps = 21/290 (7%)
Strand=Plus/Plus
Query 82 CCGGAGAGACCCAAAAGGA-CTTTATTGGGATGGAAAGATAAGAGTGAAGGTGAAGCTGA 140
||||| |||||||||| || | || ||||||||| |||||||||||||| ||| |
Sbjct 1 CCGGAAAGACCCAAAATGACCATT-TTGGGATGGGAAGATAAGAGTGAA---GAA----A 52
Query 141 GAAATCTAAAGCTTTGTCTTCATCTGGATTCAGGAATAAAGAGAAGGTTTTGGTTACTTG 200
| ||||||||||| ||||||||||||||| || ||||||| ||| ||||||||||||
Sbjct 53 G----CTAAAGCTTTGACTTCATCTGGATTCAAGAGTAAAGAGGAGG-TTTGGTTACTTG 107
Query 201 TTCTCGTCGAATTAGTTTCAGGTATCGGAGTTTGATGTTGAACATGGTTTCACTTCTGCC 260
|||||||||||| | ||| || |||||||||||||||||||| |||||||||||||| ||
Sbjct 108 TTCTCGTCGAATCAATTTGAGATATCGGAGTTTGATGTTGAAAATGGTTTCACTTCTACC 167
Query 261 ACACTGTAAGAAGGATAGTAAAGTTGAA-GCTAAGAGTAGCAAAGGCGCGACTTTGAATG 319
||||||||||||||| | |||||||||| | |||||||||||||||||||||||||||||
Sbjct 168 ACACTGTAAGAAGGACAATAAAGTTGAATG-TAAGAGTAGCAAAGGCGCGACTTTGAATG 226
Query 320 AGCTT-ATTGAGCTTAAGGGATCTAATTCCTGTTTGTT-TTTCGAGTGTA 367
| | | ||||| ||||| |||| |||||| |||||||| ||| ||| |||
Sbjct 227 A-CGTCATTGAACTTAAAGGATATAATTCATGTTTGTTCTTT-GAG-GTA 273
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52710572250
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5