BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg474419
Length=1743
Score E
Sequences producing significant alignments: (Bits) Value
AT1G52980.1 | Symbols: | GTP-binding family protein | chr1:197... 2660 0.0
> AT1G52980.1 | Symbols: | GTP-binding family protein | chr1:19737432-19740348
FORWARD LENGTH=1939
Length=1939
Score = 2660 bits (1440), Expect = 0.0
Identities = 1646/1747 (94%), Gaps = 8/1747 (0%)
Strand=Plus/Plus
Query 1 AAAACTCAGAGATGGTGAAGAAGGAGAAGAAATCGAATGTGTCCGGGAAACCAAAGCATT 60
|||| ||||||||||||||||||||||||||| ||||||| ||||| |||||||||||||
Sbjct 51 AAAAATCAGAGATGGTGAAGAAGGAGAAGAAAGCGAATGTTTCCGGTAAACCAAAGCATT 110
Query 61 CGCTCGATGCGAATCGTGCCGATGGGAAAAAGAAAACCACCGAAGGCC-GTACCAAAGCC 119
||||||||||||||||||| ||||| |||||||||||||||||| || || ||||| ||
Sbjct 111 CGCTCGATGCGAATCGTGCTGATGGCAAAAAGAAAACCACCGAAACCCGGT-CCAAATCC 169
Query 120 ACAGTTAATCGGCTTAAGATGTACAACACTAGACCTAAAAGAAACAG-CGGTGGTAAAAT 178
|||||||| ||||||||||||||||| ||||||||||| |||||| | ||||||||||||
Sbjct 170 ACAGTTAACCGGCTTAAGATGTACAAGACTAGACCTAAGAGAAAC-GCCGGTGGTAAAAT 228
Query 179 CCTTAGCAACGAGTACCAATCTAAGGAACTACCCAACTCACGAATC-CAACCTGATCGAC 237
|||||||||||||||||| || |||||| ||||||||||||||||| | |||||||||||
Sbjct 229 CCTTAGCAACGAGTACCAGTCAAAGGAATTACCCAACTCACGAATCGC-ACCTGATCGAC 287
Query 238 GATGGTTTGTGAACACTCGTGTTGTGAATCAGAAGGAGCTTGAATACTTTAGAGACGAGC 297
||||||||| |||||||||||||||||||||||| |||||||| ||||||||||| ||||
Sbjct 288 GATGGTTTGGGAACACTCGTGTTGTGAATCAGAAAGAGCTTGAGTACTTTAGAGAAGAGC 347
Query 298 TTCA-ATCTAAGATGTCTAATACTTTTAATGTGATTGTGAAACCGAGGAAGTTGCCTATG 356
|||| | |||||||||||| || || ||||||||| |||| ||||||||||||||||
Sbjct 348 TTCAGA-CTAAGATGTCTAGTAATTACAATGTGATTTTGAAGGAGAGGAAGTTGCCTATG 406
Query 357 TCTCTTTTAATTGATAACAAGAAGCAATCGAGAGTTCATTTACTTGACATGGAGCCCTTT 416
|||||||||| |||||||||||||||||||||||||||||| || |||||||||||||||
Sbjct 407 TCTCTTTTAACTGATAACAAGAAGCAATCGAGAGTTCATTTGCTGGACATGGAGCCCTTT 466
Query 417 CAAGATGCTTTTGGAAGGAAGACTAAAAGGAAGAGACCCAAGCTCGTGGCTTCTGATTAT 476
||||||||||||||||||||||||||||| ||| |||| ||||| || ||||||||||||
Sbjct 467 CAAGATGCTTTTGGAAGGAAGACTAAAAGAAAGCGACCAAAGCTGGTTGCTTCTGATTAT 526
Query 477 GAAGCCTTGGTTAAGAAGGCAGCTGAATCTCAGGATGCATTTGAGGAGAAGAATGGGGCT 536
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 527 GAAGCCTTGGTGAAGAAGGCAGCTGAATCTCAGGATGCATTTGAGGAGAAGAATGGGGCA 586
Query 537 GGTCCTTCTGGAGAAGGAGGAGAAGAAGAAGATGGGTTTAGGGACCTTGTGAGGCATACT 596
||||||||||| ||||||||||||||||| || |||||||| ||||||||||||||||||
Sbjct 587 GGTCCTTCTGGTGAAGGAGGAGAAGAAGAGGACGGGTTTAGAGACCTTGTGAGGCATACT 646
Query 597 ATGTTTGAGAAGGGACAGAGCAAACGTATTTGGGGTGAGCTTTACAAAGTCATAGACTCC 656
|||||||| |||||||||||||| ||||||||||| || |||||||||||||||||||||
Sbjct 647 ATGTTTGAAAAGGGACAGAGCAAGCGTATTTGGGGGGAACTTTACAAAGTCATAGACTCC 706
Query 657 TCTGATGTAATTGTCCAGGTTATAGATGCTAGGGATCCACAAGGTACTAGGTGTCATCAT 716
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 707 TCTGATGTAATTGTCCAGGTTATTGATGCTAGGGATCCACAAGGTACTAGGTGTCATCAT 766
Query 717 TTAGAGAAAACTTTGAAAGAGCATCACAAGCATAAACACATGATTCTATTGTTGAACAAG 776
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 767 TTAGAGAAAACTTTGAAAGAGCATCACAAGCATAAACACATGATTCTATTATTGAACAAG 826
Query 777 TGTGATCTTGTACCGGCTTGGGCCACTAAAGGATGGTTGAGAGTATTATCAAAGGAATAT 836
|||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 827 TGTGATCTGGTTCCGGCTTGGGCCACTAAAGGATGGTTGAGAGTATTATCAAAGGAATAT 886
Query 837 CCAACTCTAGCATTCCATGCAAGTGTTAACAAGTCATTCGGAAAGGGGTCACTTCTCTCA 896
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 887 CCAACTCTAGCATTCCATGCAAGTGTTAACAAGTCTTTCGGAAAGGGGTCACTTCTCTCA 946
Query 897 GTTTTGAGGCAGTTTGCTCGTCTAAAAAGTGACAAGCAAGCCATATCTGTGGGATTTGTT 956
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 947 GTTTTGAGGCAGTTTGCTCGTCTAAAGAGTGACAAGCAAGCCATATCTGTGGGATTTGTT 1006
Query 957 GGGTATCCCAATGTTGGGAAATCATCAGTTATCAACACACTGCGTACTAAAAATGTTTGC 1016
|||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1007 GGGTATCCGAATGTTGGGAAATCATCAGTTATCAACACGCTGCGTACTAAAAATGTTTGC 1066
Query 1017 AAGGTTGCTCCAATTCCAGGGGAGACTAAGGTCTGGCAATACATCACACTCACTAAGAGG 1076
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1067 AAGGTTGCTCCAATTCCAGGAGAGACTAAGGTCTGGCAATACATCACACTCACTAAGAGG 1126
Query 1077 ATTTTCTTGATTGATTGTCCTGGAGTTGTTTACCAGAGCCGTGATACTGAGACAGATATT 1136
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1127 ATTTTCTTGATTGATTGTCCTGGAGTTGTTTACCAGAGCCGTGATACCGAGACAGATATT 1186
Query 1137 GTCCTCAAGGGAGTGGTAAGAGTTACAAACCTGGAGGATGCATCTGAGCACATTGGAGAA 1196
|| |||||||||||||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct 1187 GTTCTCAAGGGAGTGGTAAGAGTTACAAACCTGGAAGATGCATCTGAGCACATTGGTGAA 1246
Query 1197 GTACTGAGGCGTGTCAAGAAGGAGCACTTGCAGAGAGCGTATAAAATAAACGACTGGGAG 1256
|||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct 1247 GTACTGAGGCGTGTCAAGAAAGAGCACTTGCAGAGAGCGTATAAAATAAAGGACTGGGAG 1306
Query 1257 GATGATCATGATTTTCTTCTTCAGTTATGCAAATCCTCTGGCAAACTGTTAAAGGGTGGA 1316
|| ||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1307 GACGATCATGATTTCCTTCTTCAGTTATGCAAATCTTCTGGCAAACTGTTAAAGGGTGGA 1366
Query 1317 GAGCCTGATTTGATGACAGGAGCAAAGATGATACTCCATGACTGGCAAAGAGGTCGCATA 1376
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1367 GAGCCTGATTTGATGACAGGAGCAAAGATGATACTCCATGACTGGCAAAGAGGTCGTATT 1426
Query 1377 CCTTTCTTTGTCCCACCTCCTAAGCTAGATGCGGTGGCTTCAGAATCAAAAGCAACAGTG 1436
|| |||||||||||||||||||||||||| ||||| ||||||||| ||| || ||||
Sbjct 1427 CCCTTCTTTGTCCCACCTCCTAAGCTAGACAATGTGGCCTCAGAATCAGAAGTAATAGTG 1486
Query 1437 CCAGGCATAGATGAAGAAGCCATAGCTGATAACAGTCAGGCAGCTGCTGCATTGAAAGCC 1496
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1487 CCAGGCATAGATAAAGAAGCCATAGCTGATAACAGTCAGGCAGCTGCTGCATTGAAAGCC 1546
Query 1497 ATTGCTGGAATCATGTCTACCCAACAACAGAAAGATGTTCCTGTCCAAAGAGATTTCTAT 1556
|||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 1547 ATTGCTGGAATCATGTCTACCCAACAACAGAAAGATGTTCCTGTCCAAAGGGACTTCTAT 1606
Query 1557 GACGAGAAAGACCTCAAGGATGATAATAAGGCAAAGGAGTCGACCGAAACAGACGGGGAA 1616
|||||||||||||||||||||||||| || ||||| ||||| || |||||||||| |||
Sbjct 1607 GACGAGAAAGACCTCAAGGATGATAAGAAAGCAAAAGAGTCAACTGAAACAGACGCCGAA 1666
Query 1617 AACGAAACTGATGCACAAGAAGATGAGGACGCGGTGTCGGAAGATGGAGTGGAAAGTGAG 1676
|||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1667 AACGGAACTGATGCTGAAGAAGATGAGGACGCGGTGTCGGAAGATGGAGTGGAAAGTGAC 1726
Query 1677 TTTGACGTGGATGAGGACGCAGTGTCAGAAAATGATGAGGAAAACGAGTCAGATTCTGCT 1736
| ||||| ||||||||||||||||||||||||||||| ||| |||||||||||||||||
Sbjct 1727 TCTGACGCAGATGAGGACGCAGTGTCAGAAAATGATGAAGAAGACGAGTCAGATTCTGCT 1786
Query 1737 GAGTAAT 1743
|||||||
Sbjct 1787 GAGTAAT 1793
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 86194335765
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5