BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg474420
Length=980
Score E
Sequences producing significant alignments: (Bits) Value
AT1G53000.1 | Symbols: KDSB | Nucleotide-diphospho-sugar transf... 1491 0.0
> AT1G53000.1 | Symbols: KDSB | Nucleotide-diphospho-sugar transferases
superfamily protein | chr1:19745046-19747245 REVERSE
LENGTH=1269
Length=1269
Score = 1491 bits (807), Expect = 0.0
Identities = 927/982 (94%), Gaps = 20/982 (2%)
Strand=Plus/Plus
Query 1 CGCTGGCTCGGCCACCGCTTTTTCAACAGAACAATATTtctctctctttctctctgtctc 60
|||||||||||||||||| ||||||||||||| | | ||| ||| ||| ||||||||||
Sbjct 30 CGCTGGCTCGGCCACCGC-TTTTCAACAGAAC-A-A--TCTGTCT-TTT-TCTCTGTCTC 82
Query 61 actcactctctcactcacCGGAGCAAAGTGATGTCGGTGTGTTCTTCATCGTCGTCTTCT 120
|||| ||| |||||||||||||||||||||||||||||||| ||| | ||| |||
Sbjct 83 ACTCTCTCACTCACTCACCGGAGCAAAGTGATGTCGGTGTG---TTC-T--TCG---TCT 133
Query 121 TCTTCTTCTCAGAAAACATGGATTG-TACACGGGATCTTGGCCGGAGCGGCGATTGCTGC 179
||||||||||||||||||||||||| || ||||||||||||||||| | |||||||| ||
Sbjct 134 TCTTCTTCTCAGAAAACATGGATTGTTA-ACGGGATCTTGGCCGGAACAGCGATTGCAGC 192
Query 180 GGCAATTGGCGCAAGTGCTTATCTGGGTCGATCC-AGAAAATTCCGGAGCCGGGTCGTCG 238
||||| |||||| |||||||||||||||||||| || ||||||||||||||||||||||
Sbjct 193 CGCAATCGGCGCACGTGCTTATCTGGGTCGATCCAAG-AAATTCCGGAGCCGGGTCGTCG 251
Query 239 GAATCATCCCCGCACGTTACGCTTCCTCTCGATTCGAGGGTAAGCCTCTCGTGCAAATCC 298
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 252 GAATCATTCCCGCACGTTACGCTTCCTCTCGATTCGAGGGTAAGCCTCTCGTGCAAATCC 311
Query 299 TCGGCAAACCCATGATCCAGAGAACTTGGGAGAGGTCGAAATTAGCTACTACGCTTGATC 358
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 312 TCGGCAAACCCATGATCCAGAGAACTTGGGAGAGGTCGAAGTTAGCTACTACGCTTGATC 371
Query 359 ATATTGTTGTAGCTACGGATGATGAAAGGATAGCGGAGTGCTGTCGTGGATTTGGTGCCG 418
||||||||||||| || ||||||||||| || |||||||| |||||||||||||||||||
Sbjct 372 ATATTGTTGTAGCCACTGATGATGAAAGAATCGCGGAGTGTTGTCGTGGATTTGGTGCCG 431
Query 419 ATGTCATCATGACTTCAGAGTCTTGTAGAAATGGCACTGAGCGGTGCAATGAAGCACTAG 478
|||| |||||||||||||||||||| ||||||||||||||| ||||||| ||||| ||||
Sbjct 432 ATGTTATCATGACTTCAGAGTCTTGCAGAAATGGCACTGAGAGGTGCAACGAAGCGCTAG 491
Query 479 AAAAGCTGGAGAAAAAGTATGATGTGGTTGTTAACATTCAAGGAGATGAACCACTCATTG 538
||||||||||||| ||||||||||| ||||||||||||||||||||||||||||| ||||
Sbjct 492 AAAAGCTGGAGAAGAAGTATGATGTCGTTGTTAACATTCAAGGAGATGAACCACTTATTG 551
Query 539 AGCCTGAGATTATAGATGGTGTAGTCAAAGCACTTCAGGTAACACCCGATGCAGTGTTTA 598
|||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||
Sbjct 552 AGCCTGAGATTATAGACGGTGTAGTCAAAGCACTTCAGGTAACACCGGATGCAGTGTTTA 611
Query 599 GCACAGCGGTGACATCATTGAAACCAGAAGACGGGCTTGATCCTAACCGAGTTAAATGTG 658
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 612 GCACAGCGGTGACATCATTGAAACCAGAAGACGGGCTTGATCCTAACCGAGTTAAATGTG 671
Query 659 TGGTGGACAATCGTGGCTATGCTATCTATTTCTCGAGGGGTTTGATTCCTTATAACAAGA 718
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 672 TGGTGGACAATCGTGGCTATGCTATCTATTTCTCAAGGGGTTTGATTCCTTATAACAAGA 731
Query 719 GTGGTAAAGTCAATCCAGATTTTCCGTACATGCTTCATCTTGGAATTCAGAGCTTTGATT 778
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 732 GTGGTAAAGTCAATCCAGATTTTCCGTACATGCTTCATCTTGGAATTCAGAGCTTTGATT 791
Query 779 CAAAGTTTCTGAAAGTATATTCGGAGCTTCAACCAACGCCATTGCAGCAAGAAGAGGATC 838
| ||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 792 CGAAGTTTCTGAAGGTATATTCAGAGCTTCAACCAACGCCATTGCAGCAAGAAGAGGATC 851
Query 839 TAGAGCAGCTCAAAGTCCTTGAGAATGGCTACAAAATGAAGGTTATAAAGGTGGATCATG 898
|||| ||||||||||| ||||||||||||||||||||||||||||||||||| |||||||
Sbjct 852 TAGAACAGCTCAAAGTTCTTGAGAATGGCTACAAAATGAAGGTTATAAAGGTAGATCATG 911
Query 899 AAGCTCATGGAGTTGATACACCCGATGATGTCGAAAAGATTGAATCTTTAATGCGCGAAA 958
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 912 AAGCTCATGGAGTTGACACACCCGATGATGTCGAAAAGATTGAATCTTTAATGCGCGAAA 971
Query 959 GAAACCTGTCCTAGTCCACAAA 980
||||| ||||||||||||||||
Sbjct 972 GAAACATGTCCTAGTCCACAAA 993
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47973610385
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5