BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg474421

Length=534
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G53010.1 | Symbols:  | RING/U-box superfamily protein | chr1...   800    0.0  


> AT1G53010.1 | Symbols:  | RING/U-box superfamily protein | chr1:19747847-19748383 
FORWARD LENGTH=537
Length=537

 Score =  800 bits (433),  Expect = 0.0
 Identities = 504/538 (94%), Gaps = 5/538 (1%)
 Strand=Plus/Plus

Query  1    ATGAGCTCAGAAGAAGATG-T--GTTTAGTCTCATCAGCGTTCTTGGTCTCGCCGTTTTC  57
            ||||||||||||||||||| |  | |||||||||||||||||||||||||||| ||||||
Sbjct  1    ATGAGCTCAGAAGAAGATGATGCGATTAGTCTCATCAGCGTTCTTGGTCTCGCTGTTTTC  60

Query  58   ATCGGTCTCTGCATCTTGCTCGTTGTTCTTATTGCAACCTCAGCTATCATTCTTGTAATC  117
            ||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||
Sbjct  61   ATCGGTCTCTGCATCTTGCTCGTTGTTCTCATTGCAACCTCAGCTCTCATTCTTGTAATC  120

Query  118  TACGCCATCGTCGACTGCATTCTCCGACCATTCTTAGGAACATGTCTCGACCTAGATCTC  177
            |||| |||| |||| |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct  121  TACGTCATCATCGATTGCATTCTGCGACCATTCTTAGGAACATGTCTCGACCTAGATCTC  180

Query  178  GAAATCGGAGGACAAAGAGGCCAACAACGTGCTAGAATCGTGACTTACCATGCAATCATC  237
            |||||||||| |||||||||||||||||||||||||||||| || |||||  ||||||||
Sbjct  181  GAAATCGGAGTACAAAGAGGCCAACAACGTGCTAGAATCGTTACCTACCACACAATCATC  240

Query  238  CCGACCGGTCTACGATTACCAGATTTCGAGAGAGAAGGAAAAAAGCGTGGGCTGAAACAA  297
             ||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||
Sbjct  241  TCGACCGGTCTACGGTTACCAGATTTCGAGAGAGAAGGAAAAAAGCGCGGGCTGAAACAA  300

Query  298  AGCGCGATCGAAACCCTACTCCCGAAGTTGCTTGTTGGACAAGGCAACCATGAGGACGAC  357
            |||| ||||||||||||||| ||||||||||||||||||||||||||||||||||| || 
Sbjct  301  AGCGTGATCGAAACCCTACTACCGAAGTTGCTTGTTGGACAAGGCAACCATGAGGAGGAT  360

Query  358  AAAGAGAGGTCACTAGAATCAAGAGAATGCGCGATTTGTCTCAGTGGTTATGTCATAAAT  417
             |||| | |||||||||||||||||||||||||||||||||||||||||||||| | |||
Sbjct  361  GAAGAAAAGTCACTAGAATCAAGAGAATGCGCGATTTGTCTCAGTGGTTATGTCGTTAAT  420

Query  418  GAAGAATGCAGAGTATTTCCGGTTTGCAGACATATCTATCATGCGCTTTGTATTGACGCT  477
            |||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||
Sbjct  421  GAAGAATGCAGAGTATTTCCTGTTTGCAGACATATCTATCATGCGCTTTGTATCGACGCT  480

Query  478  TGGCTAAAGAATCATCTCACATGTCCTACTTGTCGTAAAGA-CTTACCAGATTCATGA  534
            ||||| ||||||||||||||||||||||||||||||||||| || |||||| ||||||
Sbjct  481  TGGCTTAAGAATCATCTCACATGTCCTACTTGTCGTAAAGATCT-ACCAGAATCATGA  537



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 25569180823


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5