BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg474430
Length=1386
Score E
Sequences producing significant alignments: (Bits) Value
AT1G53100.1 | Symbols: | Core-2/I-branching beta-1,6-N-acetylg... 1921 0.0
AT3G15350.1 | Symbols: | Core-2/I-branching beta-1,6-N-acetylg... 745 0.0
> AT1G53100.1 | Symbols: | Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase
family protein | chr1:19786956-19788969
REVERSE LENGTH=1415
Length=1415
Score = 1921 bits (1040), Expect = 0.0
Identities = 1258/1362 (92%), Gaps = 19/1362 (1%)
Strand=Plus/Plus
Query 1 AGGACTTAGTGTGTGATGATGCTAGTGGCTTAATTCGAGCTTGAGCTGAGGGTTTTGATT 60
|||| ||||||| |||||||||||||||| ||||||||||||||||||||| ||||||||
Sbjct 36 AGGAATTAGTGTCTGATGATGCTAGTGGCCTAATTCGAGCTTGAGCTGAGGATTTTGATT 95
Query 61 CAGATTTTGGTGTCATGCTTTTGTCTCATGACCAC-AAATTCTCTTCAAT---G-AGGT- 114
||| |||||||||||||||||||||||| || ||| |||||||||||||| | | ||
Sbjct 96 CAGTTTTTGGTGTCATGCTTTTGTCTCAAGATCACAAAATTCTCTTCAATGGGGTACGTA 155
Query 115 -ATGTGT--TTATGGAGAAGAAATGTGTATTCTCATTAGTGATCACATCTCTTGTCTGCG 171
|| ||| | ||||||||||||| |||||| ||||| || |||||||||||||||||||
Sbjct 156 AATATGTAATCATGGAGAAGAAATATGTATTTTCATTTGTTATCACATCTCTTGTCTGCG 215
Query 172 TTGTACTCATTGCAACTTCCTTCAACATTGGTTTAATCTCTTCACTTCGACCACCGGTTA 231
|||| ||| |||||||||||||||||||||||||||| |||||||||||||||||| |||
Sbjct 216 TTGTTCTCCTTGCAACTTCCTTCAACATTGGTTTAATGTCTTCACTTCGACCACCGATTA 275
Query 232 ATGGAACTTTATCCCGTTACGCCAAAAATGATTCGGATGTTGTAGCG-CAACAACCTCTT 290
||||||||||||| ||| | |||||||||||||| | ||||||| | ||||||||| |
Sbjct 276 ATGGAACTTTATCAAGTTTCCCCAAAAATGATTCGAACGTTGTAG-GAAAACAACCTCGT 334
Query 291 GAAGTCGACAAGCTCCCACGTTTCGCTTACCTTGTTTCGGGATCTAAAGGAGATCTTGAA 350
|||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 335 GAAGACGACAAGCTCCCACGTTTCGCTTACCTTGTTTCAGGATCTAAAGGAGATCTTGAA 394
Query 351 AGCCTTTGGAGAACTCTTAGAGCATTGTACCATCCAAGAAACCAATACATTGTTCACTTG 410
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 395 AGCCTTTGGAGAACTCTTAGAGCATTGTACCATCCAAGAAACCAATACATTGTTCACTTG 454
Query 411 GATCTTGAATCACCCGTTGATGAGAGGTCAGAGTTGGCTTCTCGCATTAAAAACGATCCT 470
|||||||||||||| ||||||||||| |||||||| |||||||||||| ||||||||||
Sbjct 455 GATCTTGAATCACCGGTTGATGAGAGATCAGAGTTAGCTTCTCGCATTTCAAACGATCCT 514
Query 471 ATGTATTCAAAAATAGGGAATGTCTATATGATAGCCAAAGCTAATCTTGTGACTTATACC 530
|||||||||||| ||| ||||| ||||||||| | ||||||||||||||||||||||||
Sbjct 515 ATGTATTCAAAAGCAGGAAATGTATATATGATAACTAAAGCTAATCTTGTGACTTATACC 574
Query 531 GGACCAACAATGGTGGCGAATACCCTTCACGCATGCGCGATTCTACTTAAAAGAACCCCG 590
||||||||||||||||||||||| ||||||||||| |||||||| |||||||||||||||
Sbjct 575 GGACCAACAATGGTGGCGAATACGCTTCACGCATGTGCGATTCTTCTTAAAAGAACCCCG 634
Query 591 GATTGGGATTGGTTTATCAATCTTAGTGCTTCGGATTATCCCCTCGTGACTCAAGACGAT 650
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 635 GATTGGGATTGGTTTATCAATCTTAGTGCTTCGGATTATCCCCTCGTGACTCAAGATGAT 694
Query 651 CTGATTCATACGTTTTCAACATTGGACCGGAACCTCAACTTTATCGAACACACAAG-TCG 709
||||||||||| ||||| ||||||||||||||||| ||||||||||| |||||||| ||
Sbjct 695 CTGATTCATACATTTTCGACATTGGACCGGAACCTTAACTTTATCGAGCACACAAGTTC- 753
Query 710 CTTAGGCTGGAAAAACAAGAAGCGGGCAATGCCATTAGTGATTGATCCCGGACTCTATAT 769
||||||||||||| ||||||||||||||||||||||| | |||||||| |||||||||||
Sbjct 754 CTTAGGCTGGAAATACAAGAAGCGGGCAATGCCATTAATAATTGATCCTGGACTCTATAT 813
Query 770 GTTAAACAAATCAAACGTTTTATGGGTCAGGCCTAATCGAAGTTTACCAGCTGCTTTCAA 829
||||||||||||||||||||||| ||| || ||||||||||||||||| ||||||||||
Sbjct 814 GTTAAACAAATCAAACGTTTTATTGGTTAGACCTAATCGAAGTTTACCTTCTGCTTTCAA 873
Query 830 GTTATTTACCGGATCAGCTTGGATGGCTCTATCGCACTCATTCGTGGAGTATATCATATG 889
|||||||| | | ||||||||||||||||||||| |||||||||||||||||||||
Sbjct 874 GTTATTTA-C----C-GCTTGGATGGCTCTATCGCACGCATTCGTGGAGTATATCATATA 927
Query 890 GGGTTGGGACAATTTACCAAGAACTTTACTCATGTACTACACCAATTTCGTTTCTTCTCC 949
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 928 CGGTTGGGACAATTTACCAAGAACTTTACTCATGTACTACACCAATTTCGTTTCTTCTCC 987
Query 950 TGAAGGTTACTTCCATACAGTCATATGTAACGTGCCTGAGTTCTCCAAAACCGCGGTGAA 1009
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 988 TGAAGGTTACTTCCATACAGTCATATGTAACGTGCCTGAGTTCTCCAAAACCGCGGTGAA 1047
Query 1010 CCATGATCTTCACTACATTGCATGGGATAAGCCGCCGAGGCAGCATCCTCGCATGTTGTC 1069
|||||||||||||||||| |||||||| ||||| ||||||||||||||||| ||||||||
Sbjct 1048 CCATGATCTTCACTACATCGCATGGGACAAGCCACCGAGGCAGCATCCTCGTATGTTGTC 1107
Query 1070 CCTAAGAGACATGGGAAAGATGACTGCGAGCGGATCTGCATTTGGTCGGAAATTCAGAAG 1129
| |||||||||||||||||||| | ||||||||||||||||||||||||| ||||||||
Sbjct 1108 TCAAAGAGACATGGGAAAGATGATTTCGAGCGGATCTGCATTTGGTCGGAAGTTCAGAAG 1167
Query 1130 AAATGACACAGTTTTGGATAAGATCGATAAGTTACTGCTTCTTCGGATGAAGGAAGACGG 1189
|||||| || |||||||||||||| |||||| ||||||| | ||||| || ||||||||
Sbjct 1168 AAATGATACTGTTTTGGATAAGATTGATAAGGAACTGCTTATACGGATAAACGAAGACGG 1227
Query 1190 TTTTACTCCCGGCGGTTGGTGCGGTGGGAAACCAGAGTGCTCGGTTGTCGAAGACGTGGC 1249
||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1228 TTTTACTCCAGGCGGTTGGTGCGGTGGGAAACCAGAGTGCTCGGTTGTCGAAGATGTGGC 1287
Query 1250 TAGGATCAGGCCTAGCTCAGGGGCTGTGAGGCTCAAGGGGCTTGTAGATATGTTAGTTAC 1309
|||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||
Sbjct 1288 TAGGATCAGGCCTAGCTCAGGGGCTGTGAGGCTCAAGGAGCTTGTAGATAGGTTAGTTAC 1347
Query 1310 GGAGGCTAAATCAGGAAAGAATCAATGTGTATAGAGAATCAA 1351
|||||||||| ||| ||||||||||||||||| ||||||||
Sbjct 1348 AGAGGCTAAATTAGGTAAGAATCAATGTGTATAAAGAATCAA 1389
> AT3G15350.1 | Symbols: | Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase
family protein | chr3:5166206-5169151
FORWARD LENGTH=1964
Length=1964
Score = 745 bits (403), Expect = 0.0
Identities = 851/1060 (80%), Gaps = 59/1060 (6%)
Strand=Plus/Plus
Query 297 GACAAGC-TCCCACGTTTCGCTTACCTTGTTT-CGGGATCTAAAGGAGATCTTG-AAAGC 353
||||||| |||| ||||| || |||||||||| |||| |||||||| ||| | | ||||
Sbjct 646 GACAAGCTTCCC-CGTTTTGCATACCTTGTTTCCGGG-TCTAAAGGGGATGTAGAAAAG- 702
Query 354 CTTTGGAGAACTCTTAGAGCATTGTACCATCCAAGAAACCAATACATTGTTCACTTGGAT 413
||||||||||| ||||||||| ||||||||||||||||||| || ||||||||||||||
Sbjct 703 CTTTGGAGAACACTTAGAGCAGTGTACCATCCAAGAAACCAGTATGTTGTTCACTTGGAT 762
Query 414 CTTGAATCACCCGTTG-ATGAGAGGTCAGAGTTGGCTTCTCGCATTAAAAACGATCCTAT 472
||||||||||| | || ||||||| | |||| |||| ||||| ||||| |||||||||||
Sbjct 763 CTTGAATCACCTG-TGAATGAGAGATTAGAGCTGGCCTCTCGGATTAATAACGATCCTAT 821
Query 473 GTATTCAAAAATAGGGAATGTCTATATGATAGCCAAAGCTAATCTTGTGACTTATACCGG 532
||| || |||| |||||||| ||||||||| |||| ||||| |||||||| |||| ||
Sbjct 822 GTACTCTAAAACCGGGAATGTATATATGATAACCAAGGCTAACCTTGTGACATATAAAGG 881
Query 533 ACCAACAATGGTGGCGAATACCCTTCACGCATGCGC-GATTCTACTTAAAAGAACCCCGG 591
|||||| |||||||| ||||| |||||||| || || | |||| || || |||| ||
Sbjct 882 ACCAACGATGGTGGCAAATACTCTTCACGCTTGTGCTG-TTCTTCTCAAGAGAAATGCGA 940
Query 592 ATTGGGATTGGTTTATCAATCTTAGTGCTTCGGATTATCCCCTCGTGACTCAAGACGATC 651
| |||||||||||||| || ||||||||||| |||||||| || ||||| ||||| ||||
Sbjct 941 ACTGGGATTGGTTTATTAACCTTAGTGCTTCAGATTATCCTCTGGTGACCCAAGATGATC 1000
Query 652 TGATTCATACGTTTTCAACATTGGACCGGAACCTCAACTTTATCGAACACACAAGTCG-C 710
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1001 TGCTTCATACGTTTTCAACATTGGACCGGAACCTCAACTTTATCGAACACACAAGTCAAC 1060
Query 711 TTAGGCTGGAAAAACAAGAAGCGGGCA-ATGCCATTAGTGATTGATCCCGGACTCTA-TA 768
| || |||||| | ||||||| ||| | ||||||| |||||||||| |||||||| |
Sbjct 1061 TG-GGATGGAAAGAGGAGAAGCGAGCACA-GCCATTAATGATTGATCCTGGACTCTACT- 1117
Query 769 TGTTAAACAAATCAAACGTTTTA-TGGGTCAGGCCTAATCGAAGTTTACCAGCTGC-TTT 826
|||| |||||||| | ||| | ||||||| ||| |||||||| ||| |||| |||
Sbjct 1118 TGTTGAACAAATCTGATATTT-ACTGGGTCACACCTCGCCGAAGTTTGCCAACTGCCTTT 1176
Query 827 CAAGTTATTTACCGGATCAGCTTGGATGGCTCTATCGCACTCATTCGTGGAGTATAT-CA 885
|||||||| || ||||||||||||||||||||||| | | | || || |||||| | ||
Sbjct 1177 -AAGTTATTCACTGGATCAGCTTGGATGGCTCTATCACGCCCGTTTGTAGAGTAT-TGCA 1234
Query 886 TATGGGGTTGGGACAATTTACCAAGAACTTTACTCATGTACTACACCAATTTCGTTTCTT 945
||||||| ||||||||||||||| ||||| | || ||||| |||||||| |||||||| |
Sbjct 1235 TATGGGGATGGGACAATTTACCACGAACTCTCCTAATGTATTACACCAACTTCGTTTCAT 1294
Query 946 CTCCTGAAGGTTACTTCCATACAGTCATATGTAACGTGCCTGAGTTCTCCAAAACC-GCG 1004
| || |||||||||||||| || || || || |||||||||||||| | ||||| | ||
Sbjct 1295 CGCCCGAAGGTTACTTCCAGACCGTGATTTGCAACGTGCCTGAGTT-TGCAAAAACTGCA 1353
Query 1005 GTGAACCATGATCTTCACTACATTGCATGGGATAAGCCGCCG-AGGCAGCATCCTCGCAT 1063
|| |||||||| || ||||||||| | ||||| || |||||| || ||||| || | | |
Sbjct 1354 GTAAACCATGACCTACACTACATTTCCTGGGACAATCCGCCGCAG-CAGCACCCACACGT 1412
Query 1064 GTTGTCCCT-AA-GAGACA-TGG-GAAAGATGACTGCGAGCGGAT-CTGCATTTGGTCGG 1118
|||||| || || || ||| || || ||| | || |||||| | |||| |||| | ||
Sbjct 1413 GTTGTCACTCAACGACACAATGCCGAT-GAT-A-TG-GAGCGG-TGCTGCGTTTGCTAGG 1467
Query 1119 AAATTCAGAAGAAATGAC-ACAGTT-TTGGATAAGATCGATAAGTTACTGCTTCTTCGGA 1176
|||||||||||| |||| | ||| || |||||||||||||| | | ||| ||||
Sbjct 1468 AAATTCAGAAGAGATGATGA-AGTACTTA-ATAAGATCGATAAGGAATTACTTAAACGGA 1525
Query 1177 TGAAGGA-A--GACGGTTTTACTCCCGGCGGTTGGTGCGGTGGGAAACCAGAGTGCTC-- 1231
||| || | || |||||||||| || || |||||| ||||||||||| | |||||
Sbjct 1526 GGAATGATAAAGATAGTTTTACTCCTGGTGGATGGTGCAGTGGGAAACCAAAATGCTCCA 1585
Query 1232 GGTTGTCGA-AGACGTGGCTAGGATCAGG-CCTAGCTCAGGGGCTGTGAGGCT-CAAGGG 1288
|| |||| | | ||||||| ||| | ||||||| || ||| |||||| |||||
Sbjct 1586 GG--GTCGGTA-ATGTGGCTAAGATT-GTTCCTAGCTTTGGAGCTCAGAGGCTTCAAGGA 1641
Query 1289 GCTTGTAGAT-ATGTTAGTTA-CGGAGGCTAA-ATCAGGA 1325
||||| || | |||||| | || || |||| | |||||
Sbjct 1642 -CTTGT-GACCAGGTTAGTCAACGAAG-CTAATA-CAGGA 1677
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 68272741200
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5