BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg474435
Length=851
Score E
Sequences producing significant alignments: (Bits) Value
AT1G53160.2 | Symbols: SPL4 | squamosa promoter binding protein... 1064 0.0
AT3G15270.1 | Symbols: SPL5 | squamosa promoter binding protein... 296 2e-79
AT5G50670.1 | Symbols: SPL13B, SPL13 | Squamosa promoter-bindin... 75.0 1e-12
AT5G50570.1 | Symbols: SPL13A, SPL13 | Squamosa promoter-bindin... 75.0 1e-12
> AT1G53160.2 | Symbols: SPL4 | squamosa promoter binding protein-like
4 | chr1:19806419-19807608 FORWARD LENGTH=857
Length=857
Score = 1064 bits (576), Expect = 0.0
Identities = 776/868 (89%), Gaps = 31/868 (4%)
Strand=Plus/Plus
Query 1 CATTGCTTAACCTATTAGAGTTTCTTTTCTCCAACAAACCATCTTT-TCAAGACTCCAAA 59
|||||||||||||||||||||||| || |||||||||||||||||| | |||||||||||
Sbjct 1 CATTGCTTAACCTATTAGAGTTTCCTTCCTCCAACAAACCATCTTTAT-AAGACTCCAAA 59
Query 60 ATGGAGGGTAAAAGAACACAAGGACAAGGCTACTTGaaaaaaaaGTCTTACCGTGTGGAA 119
||||||||||| ||| ||||||||||||| ||| ||||||| |||||||||| |||||||
Sbjct 60 ATGGAGGGTAAGAGATCACAAGGACAAGGTTACATGAAAAAGAAGTCTTACCTTGTGGAA 119
Query 120 GAAGAAATGGAGAATGATACGGATGGAGAAGAGGAAGTTGGTCGGGATAGAGTTAGAGGG 179
||||| ||||||| ||||||||||| |||||||||||| ||| |||||||||||||||||
Sbjct 120 GAAGATATGGAGACTGATACGGATGAAGAAGAGGAAGTAGGTAGGGATAGAGTTAGAGGG 179
Query 180 TCTAGTGGCAGCATCGATCGTGGTGGCTCGTTGCGGCTTTGCCAAGTAGATAGATGCACA 239
||||| || |||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 180 TCTAGAGGTAGCATCAATCGTGGTGGCTCGTTGCGGCTTTGCCAAGTAGATAGATGCACA 239
Query 240 ACCGATATGAAAGAGGCAAAACTGTATCACCGGAGACACAAAGTGTGTGAAGTTCATGCA 299
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 240 GCTGATATGAAAGAGGCAAAACTGTATCACCGGAGACACAAAGTGTGTGAAGTTCATGCA 299
Query 300 AAGGCATCTTCTGTCTTTCTCTCAGGACTTAACCAACGCTTTTGTCAACAATGCAGCAGG 359
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 300 AAGGCATCTTCTGTCTTTCTCTCAGGACTTAACCAACGCTTTTGTCAACAATGCAGTAGG 359
Query 360 TTTCATGAGATCCAAGAGTTTGATGAAGCAAAAAGAAGTTGTC-GTAGGCGCTTAGCTGG 418
|||||||| ||||||||||||||||||| || |||||||| | | ||||||||||||||
Sbjct 360 TTTCATGACCTCCAAGAGTTTGATGAAGCTAAGAGAAGTTG-CAGGAGGCGCTTAGCTGG 418
Query 419 ACACAATGAAAGAAGAAGGAAGAGCTCTGGTGAGAGTACTT-TCGGAGAAGGATCAGGTC 477
||||||||| |||||||||||||||||||||||||||||| | ||||||||||||||||
Sbjct 419 ACACAATGAGCGAAGAAGGAAGAGCTCTGGTGAGAGTACTTAT-GGAGAAGGATCAGGTC 477
Query 478 GGAGAGGAATCACTGGTCAGGTG---ATCCAGAATCAAGAAAGATCAAGGGTAGAGATGA 534
|||||||||||| |||||||||| || |||||||||||||||||||||||||||||||
Sbjct 478 GGAGAGGAATCAATGGTCAGGTGGTGATGCAGAATCAAGAAAGATCAAGGGTAGAGATGA 537
Query 535 CACTTCCTATGCCAAACTCATCATTCAAGCGACCACAGATTAGATAGAGAAGCTATACGA 594
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 538 CACTTCCTATGCCAAACTCATCATTCAAGCGACCACAGATTAGATAGAGAAGCTATACGA 597
Query 595 GCAAGGAGTGTGTCTTATCCAGAAA-CACAGGGGACTACTAAGTACTAACCGAAAGCCAC 653
| |||||||||| |||||||| ||| ||||||| | |||| |||||| ||||||||
Sbjct 598 GTAAGGAGTGTGACTTATCCA-AAAGCACAGGGAA--ACTA----CTAACCAAAAGCCAC 650
Query 654 GGTCACTTTGAAGTTTGAGAACCACAAATTAAATGAGAT-A-CTTTGCTGAAGATTTC-A 710
||||||| |||||||| ||| |||| || | || | || | | | ||| || | |
Sbjct 651 GGTCACTCTGAAGTTTCAGAGCCACGAAGGAGAT-ATATCATCCTAGCTTTTCCTTGCCA 709
Query 711 TATCTTTAGTA-TAGAATACAAGATTTGAATAATCAACGACCATTATCAGTAAATTGTTG 769
| | | |||| ||||||| || |||||||||| || | |||||||| ||||||| ||||
Sbjct 710 -A-CAT-AGTAGTAGAATAGAATATTTGAATAAACACCTACCATTATTAGTAAATCGTTG 766
Query 770 AG--TAGATTATAGTAGAAGCAAACCTTCCAGGGTCCATTACTTGCTATGATGAGAAACT 827
|| ||||||||||| |||||||||||| |||||||||| |||||||||||||||| |||
Sbjct 767 AGAGTAGATTATAGTGGAAGCAAACCTTTCAGGGTCCATCACTTGCTATGATGAGAGACT 826
Query 828 --TT-G-CGTCATCAATAATTATTTTAT 851
|| | |||||||||||||||| ||||
Sbjct 827 CCTTAGACGTCATCAATAATTATCTTAT 854
> AT3G15270.1 | Symbols: SPL5 | squamosa promoter binding protein-like
5 | chr3:5140365-5141348 REVERSE LENGTH=897
Length=897
Score = 296 bits (160), Expect = 2e-79
Identities = 307/376 (82%), Gaps = 17/376 (5%)
Strand=Plus/Plus
Query 212 GCGGCTTTGCCAAGTAGATAGATGCACAACCGATATGAAAGAGGCAAAACTGTATCACCG 271
||| || ||||| || ||||| ||||| || ||| ||||| || | |||| ||||
Sbjct 272 GCGACTGTGCCAGGTCGATAGGTGCACTGTTAATTTGACTGAGGCCAAGCAGTATTACCG 331
Query 272 GAGACACAAAGTGTGTGAAGTTCATGCAAAGGCATCTTCT--GTCTTTCTCTCAGGACTT 329
||||||| ||| |||||||| ||||||||||||||| || | || | | |||| |
Sbjct 332 CAGACACAGAGTATGTGAAGTACATGCAAAGGCATCTGCTGCGACTGT-T-GCAGGGGTC 389
Query 330 AACCAACGCTTTTGTCAACAATGCAGCAGGTTTCATGAGAT-CCAAGAGTTTGATGAAGC 388
| |||||||||||||||||||||||||||||||||||| | ||| ||||||||||||||
Sbjct 390 AGGCAACGCTTTTGTCAACAATGCAGCAGGTTTCATGAGCTACCA-GAGTTTGATGAAGC 448
Query 389 AAAAAGAAGTTGTC-GTAGGCGCTTAGCTGGACACAATGAAAGAAGAAGGAAGAGCTCTG 447
|||||||| || | | ||||||||||||||||||||||| || || ||||||| |||||
Sbjct 449 TAAAAGAAGCTG-CAGGAGGCGCTTAGCTGGACACAATGAGAGGAGGAGGAAGATCTCTG 507
Query 448 GTGAGAGTACTTTCGGAGAAGGATCAGGTCGGAGAGGAATCA-CTGGTCAGGTGATCCAG 506
|||| ||| ||| |||||||| ||||| |||||||| | | | ||||| ||||||||
Sbjct 508 GTGACAGT--TTT-GGAGAAGGGTCAGGCCGGAGAGGGTTTAGC-GGTCAACTGATCCAG 563
Query 507 AATCAAGAAAGAT-CAAGGGTAGAGATGACACTTCCTATG-CCAAACTCATCATTCAAGC 564
| |||||||||| || ||||||| | || |||||||||| |||| ||||||||||||||
Sbjct 564 ACTCAAGAAAGAAACA-GGGTAGACAGGAAACTTCCTATGACCAA-CTCATCATTCAAGC 621
Query 565 GACCACAGATTAGATA 580
|||||||||| |||||
Sbjct 622 GACCACAGATCAGATA 637
> AT5G50670.1 | Symbols: SPL13B, SPL13 | Squamosa promoter-binding
protein-like (SBP domain) transcription factor family protein
| chr5:20615704-20617901 REVERSE LENGTH=1497
Length=1497
Score = 75.0 bits (40), Expect = 1e-12
Identities = 132/175 (75%), Gaps = 12/175 (7%)
Strand=Plus/Plus
Query 272 GAGACACAAAGTGTGTGAAGTTCATGCAAAGGCATCTTCTGT-CTTTCT-CTCA-GGACT 328
|||||| ||||| ||||| |||||| |||| | || |||| || || | | || |
Sbjct 578 GAGACATAAAGTTTGTGATGTTCATTCAAA---AACTCCTGTGGTTACTATTAATGGTCA 634
Query 329 TAACCA-ACGCTTTTGTCAACAATGCAGCAGGTTTCATGAGATCCAAGAGTTTGATGAAG 387
||| || | | |||||||||||||||||||||||||||| | | |||||||||||||
Sbjct 635 TAAACAGA-GGTTTTGTCAACAATGCAGCAGGTTTCATGCTTTGGAGGAGTTTGATGAAG 693
Query 388 CAAAAAGAAGTTGTCGTAGGCG-CTTAGCTGGACACAAT-GAAAGAAGAAGGAAG 440
|| ||||||||| | | || ||| | |||||| ||| ||| || || |||||
Sbjct 694 GGAAGAGAAGTTGTAGGAAACGTCTT-GATGGACATAATCGAA-GACGACGGAAG 746
> AT5G50570.1 | Symbols: SPL13A, SPL13 | Squamosa promoter-binding
protein-like (SBP domain) transcription factor family protein
| chr5:20582083-20584559 REVERSE LENGTH=1776
Length=1776
Score = 75.0 bits (40), Expect = 1e-12
Identities = 132/175 (75%), Gaps = 12/175 (7%)
Strand=Plus/Plus
Query 272 GAGACACAAAGTGTGTGAAGTTCATGCAAAGGCATCTTCTGT-CTTTCT-CTCA-GGACT 328
|||||| ||||| ||||| |||||| |||| | || |||| || || | | || |
Sbjct 578 GAGACATAAAGTTTGTGATGTTCATTCAAA---AACTCCTGTGGTTACTATTAATGGTCA 634
Query 329 TAACCA-ACGCTTTTGTCAACAATGCAGCAGGTTTCATGAGATCCAAGAGTTTGATGAAG 387
||| || | | |||||||||||||||||||||||||||| | | |||||||||||||
Sbjct 635 TAAACAGA-GGTTTTGTCAACAATGCAGCAGGTTTCATGCTTTGGAGGAGTTTGATGAAG 693
Query 388 CAAAAAGAAGTTGTCGTAGGCG-CTTAGCTGGACACAAT-GAAAGAAGAAGGAAG 440
|| ||||||||| | | || ||| | |||||| ||| ||| || || |||||
Sbjct 694 GGAAGAGAAGTTGTAGGAAACGTCTT-GATGGACATAATCGAA-GACGACGGAAG 746
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41493405422
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5