BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg474437
Length=925
Score E
Sequences producing significant alignments: (Bits) Value
AT1G53163.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 1293 0.0
> AT1G53163.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: cellular_component unknown; BEST Arabidopsis
thaliana protein match is: unknown protein (TAIR:AT3G15250.1);
Has 315 Blast hits to 216 proteins in 74 species: Archae
- 0; Bacteria - 86; Metazoa - 43; Fungi - 52; Plants - 27;
Viruses - 1; Other Eukaryotes - 106 (source: NCBI BLink). |
chr1:19812262-19813286 FORWARD LENGTH=1025
Length=1025
Score = 1293 bits (700), Expect = 0.0
Identities = 859/934 (92%), Gaps = 18/934 (2%)
Strand=Plus/Plus
Query 1 AAGTAACGTTTTGAAGATGGAGGATGACC-AACAAAGTACCCCAAACTCCGGTGAGACCA 59
||| ||||||||||||||||||||| ||| | ||| ||||||||||||||| |||||||
Sbjct 15 AAGAAACGTTTTGAAGATGGAGGATAACCGGA-AAACTACCCCAAACTCCGGCGAGACCA 73
Query 60 AGCCGGAAACGTCCGTGGAGACATCATC-ACCATCGGACTTTGAGTTTGGATCATTGACT 118
| || || |||||| ||||||| ||| | | |||| ||||| ||||||||||||||||||
Sbjct 74 AACCAGAGACGTCCCTGGAGACGTCA-CTATCATCAGACTTCGAGTTTGGATCATTGACT 132
Query 119 CCCTCATCTCCATCACAAGACCCCTTCTCGGAAAATTCTCCCGCCGATCATCTTTTTCTC 178
||| |||||||||||||||||||||||||||||||||||||||| ||||||||||| |||
Sbjct 133 CCCACATCTCCATCACAAGACCCCTTCTCGGAAAATTCTCCCGCTGATCATCTTTTCCTC 192
Query 179 AACGGCCGTCTATTACCGCACTCTTTTCCGACGAGCACGACGACGACACGTTCAGTGTCA 238
||||||||||||||||| ||||||||||| |||||||||| ||||||||||||||||||
Sbjct 193 AACGGCCGTCTATTACCACACTCTTTTCCAACGAGCACGATAACGACACGTTCAGTGTCA 252
Query 239 CGTACGACCAGCGAAAACACTTTTCGGAGCAATAGTTCGAGCAGCCGAAGCAGTTATAGC 298
||||| ||||||||||||||||| |||||| |||||| |||||||||||||||| ||||
Sbjct 253 CGTACTACCAGCGAAAACACTTTCCGGAGCGATAGTTGGAGCAGCCGAAGCAGTGATAGT 312
Query 299 AGCAGCCCGACATCTTACACTCCAAGAACAAGCACTTGTAATATCTTCAAGATCACGAGT 358
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 313 AGCAGCCCGACATCTTACACTCCAAGAACAAGCACTTGTAATATCTTCAAGATCACAAGT 372
Query 359 TCTAGTACCGGACATGTGAAAGAGACTAATTTAACATGTTTTGGTACTCGGTCCGAAGAG 418
||||||||||| |||| ||||||||||||| |||||||||||||||||||||||||||||
Sbjct 373 TCTAGTACCGGTCATGGGAAAGAGACTAATATAACATGTTTTGGTACTCGGTCCGAAGAG 432
Query 419 ATTATGTGTCTGAGGCCCGTAACTTCTTTGAAGAAAACAAACACTTGCAGCAGCAAAGAA 478
|||||||| || ||||||| |||||||| ||||||||||||||||||| ||||||||||
Sbjct 433 ATTATGTGCCTAAGGCCCGCAACTTCTTCAAAGAAAACAAACACTTGCATCAGCAAAGAA 492
Query 479 TACTATAACAAGCCATCGTTAATATTGGATCTAAAGAAGAGACCACCGATGAAAAATGGT 538
|||||| |||| |||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 493 TACTATCACAAACCATCGTTAATATTGGATCTAAAGAAGAGACCACCGGTGGAAAATGGT 552
Query 539 AAAGCCGTAAATACTTCAACCACAAATAAGGTTTCGTATTTGCCGCAATGCAAGAGGAAG 598
||||||||||| | | | |||||||||||||||||||||||||||||||||||||||
Sbjct 553 AAAGCCGTAAA--C---A-CGACAAATAAGGTTTCGTATTTGCCGCAATGCAAGAGGAAG 606
Query 599 AAGGCGACGGAGATTGTGACAGCGCAGCTTTACGGGTCGTATTCACGGCGGTGGCAGCAT 658
|| |||||||||||||| || || ||||||||||||||||||||||||||||||||||||
Sbjct 607 AAAGCGACGGAGATTGTAACGGCTCAGCTTTACGGGTCGTATTCACGGCGGTGGCAGCAT 666
Query 659 ATAACTCCGGTCTTTAAAAGAGAAGGATCGGTGAAAAGTAGAGG-AGGAGGGATTAAGGT 717
|||||||||||||||||||||||||| ||||||||||||| ||| |||||||||||||||
Sbjct 667 ATAACTCCGGTCTTTAAAAGAGAAGGGTCGGTGAAAAGTA-AGGGAGGAGGGATTAAGGT 725
Query 718 CGGTggacggaagaagaagacgacgaggaggaaaaagccaaagaaggcggaggagagaag 777
|||||||||||| |||||| ||||||||||||| ||||| ||||||||||||||||||||
Sbjct 726 CGGTGGACGGAAAAAGAAGTCGACGAGGAGGAAGAAGCCGAAGAAGGCGGAGGAGAGAAG 785
Query 778 aggaaT--G-AGTAAGTTGATGAAGTGGTGGAAGAGGATTTTAAAGGCGGTGGTGTTTGC 834
|||||| | |||||||| ||||||||||||||||| ||| |||||||||||||||||||
Sbjct 786 AGGAATAAGTAGTAAGTTAATGAAGTGGTGGAAGAGAATTCTAAAGGCGGTGGTGTTTGC 845
Query 835 TTGCAGGGAGTGTCATGCAATGGAGCCTCA---GATACTTGTAAATGATGATGCTGATGT 891
|||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||
Sbjct 846 TTGCAGGGAGTGTCATGCAATGGAGCCTCATCAGATACTTGTAAATGATGATGCTGGTGT 905
Query 892 GGAAAAGAAGATAACTAAATGTCCATAATCAAAA 925
| |||||||||| | |||||||||||||||||||
Sbjct 906 GAAAAAGAAGATTATTAAATGTCCATAATCAAAA 939
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45210732300
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5