BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg474440
Length=917
Score E
Sequences producing significant alignments: (Bits) Value
AT1G53170.1 | Symbols: ATERF-8, ATERF8, ERF8 | ethylene respons... 651 0.0
> AT1G53170.1 | Symbols: ATERF-8, ATERF8, ERF8 | ethylene response
factor 8 | chr1:19821337-19822252 REVERSE LENGTH=916
Length=916
Score = 651 bits (352), Expect = 0.0
Identities = 454/499 (91%), Gaps = 24/499 (5%)
Strand=Plus/Plus
Query 431 CGGTGTTTTCGTT-G--GTAGTCCTACTCAGAGTAGCACCGTCATCGACTCTACCTCTCC 487
||||||| ||||| | |||||||||||||||||||||||| ||| || | ||||||
Sbjct 414 CGGTGTTATCGTTGGTAGTAGTCCTACTCAGAGTAGCACCG---TCG--TCGA-CTCTCC 467
Query 488 CACGGCGGCAAGGTTTGTAACACCTCCGCAGCTCGAGCTCAGCTTA---GGCGGCGGCGC 544
|||||||||| ||||| ||||||||||||| ||||||||||||||| |||||||||||
Sbjct 468 CACGGCGGCACGGTTTATAACACCTCCGCACCTCGAGCTCAGCTTAGGCGGCGGCGGCGC 527
Query 545 GTGTCGTCGTAAGATCCCGCTTGTACGTCCGGTTTACTACTTTAACATGACGGCGTATCC 604
|||||||||||||||||||||||| | |||||||||||||| ||||||| || |||||||
Sbjct 528 GTGTCGTCGTAAGATCCCGCTTGTGCATCCGGTTTACTACTATAACATGGCGACGTATCC 587
Query 605 GAGGAAGATGACGGCGTGTGGTGTCCAGAGCGAGTCTGAAACGTCGTCGGTCGTTGATTT 664
| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 588 -A--AAGATGACGACGTGTGGTGTCCAGAGCGAGTCTGAAACGTCGTCGGTCGTTGATTT 644
Query 665 CGAAGGTGGAGCTGGGAAGATATCTCAGCCGTTAGATCTGGATCTTAACTTAGCTCCTCC 724
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 645 CGAAGGTGGAGCTGGGAAGATATCTCCGCCGTTAGATCTGGATCTTAACTTAGCTCCTCC 704
Query 725 GGCGGAATAGGCCGTGAGttttttttCTTTCTTATGTCGTTTCTTTAGA-AAAAACAA-T 782
|||||||||||||||||||||||||| || ||||||||||||||||||| ||||| || |
Sbjct 705 GGCGGAATAGGCCGTGAGTTTTTTTT-TT-CTTATGTCGTTTCTTTAGACAAAAAAAAAT 762
Query 783 AACGTTTTCTTTTT----CTGCCTAAGaaaaaaaaTATTATCCGTTTTTTAGAAGAAAGT 838
||||||| |||||| |||||||||||||||| |||||||||||||||||||||||||
Sbjct 763 AACGTTTCCTTTTTTTTTCTGCCTAAGAAAAAAA-TATTATCCGTTTTTTAGAAGAAAGT 821
Query 839 GGAGAAAAGCTAAAATATAATTTTTAGCTGCCATGGaaaaaaaGTCGTTATGTATATATT 898
| ||||||||| ||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct 822 GTAGAAAAGCTCCAATATAATTTTTAGCTGCCGTGAAAAAAAAGTCGTTATGTATATATT 881
Query 899 ATTATCAAACCCTATAATA 917
||||| ||||||||| |||
Sbjct 882 ATTATGAAACCCTATTATA 900
Score = 394 bits (213), Expect = 8e-109
Identities = 234/244 (96%), Gaps = 2/244 (1%)
Strand=Plus/Plus
Query 156 ATGGGTTCGAAACCCGACCCGGTTGCTCCAACGAACCCGACTCGTCATGAGAGTAATGCT 215
||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 172 ATGGGTTTGAAACCCGACCCGGTTGCTCCAACGAACCCGACTCATCATGAGAGTAATGCT 231
Query 216 GCCAAAGAGATTCGTTACAGAGGCGTTAGGAAACGTCCATGGGGAAGATACGCCGCTGAG 275
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 232 GCCAAAGAGATTCGTTACAGAGGCGTTAGGAAACGTCCATGGGGAAGATACGCCGCTGAG 291
Query 276 ATCCGAGATCCAGTTAAGAAAACTCGGGTCTGGCTCGGTACGTTCGATACCGCTCAGCAG 335
||||||||||| |||||||||||||| |||||||||||||||||||| ||||||||||||
Sbjct 292 ATCCGAGATCCGGTTAAGAAAACTCGAGTCTGGCTCGGTACGTTCGACACCGCTCAGCAG 351
Query 336 GCGGCGCGTGCTTACGACGCAGCAGCGCGTGACTTTCGTGGT-TCGAAAGCTAAGACCAA 394
||||||||||||||||||||||| |||||||||||||||||| | || |||||||||||
Sbjct 352 GCGGCGCGTGCTTACGACGCAGCCGCGCGTGACTTTCGTGGTGTT-AAGGCTAAGACCAA 410
Query 395 TTTC 398
||||
Sbjct 411 TTTC 414
Score = 193 bits (104), Expect = 3e-48
Identities = 140/155 (90%), Gaps = 12/155 (8%)
Strand=Plus/Plus
Query 1 AAACCATCTCTCAAAATGGCTTTGACTGTTCACAAGAAAGCTCCCCAAAAGGAGCGTTGC 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 AAACCATCTCTCAAAATGGCTTTGACTGTTCACAAGAAAGCTCCCCAAAAGGAGCGTTGC 60
Query 61 TTTACTCTCAATCTCCTCCTATAAAAAGAAGctcttcttcttcttcttctcattaccaca 120
||||||||| || |||||||||||||||||| |||||||| | ||||||||
Sbjct 61 TTTACTCTC---CT------ATAAAAAGAAGCTCTTCTACTTCTTCT-CG--TTACCACA 108
Query 121 aaactctttcaccgatcttctcgttcctttcttct 155
||||||||||||||||||||||||||| |||||||
Sbjct 109 AAACTCTTTCACCGATCTTCTCGTTCCATTCTTCT 143
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44808859124
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5