BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg474441
Length=1373
Score E
Sequences producing significant alignments: (Bits) Value
AT1G53180.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 2054 0.0
AT3G15115.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 78.7 1e-13
> AT1G53180.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: cellular_component unknown; EXPRESSED IN: 13
plant structures; EXPRESSED DURING: 6 growth stages; BEST
Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G15115.1);
Has 58 Blast hits to 56 proteins in 22 species:
Archae - 0; Bacteria - 0; Metazoa - 6; Fungi - 4; Plants
- 29; Viruses - 0; Other Eukaryotes - 19 (source: NCBI BLink).
| chr1:19831441-19832895 FORWARD LENGTH=1386
Length=1386
Score = 2054 bits (1112), Expect = 0.0
Identities = 1299/1386 (94%), Gaps = 25/1386 (2%)
Strand=Plus/Plus
Query 1 AACAAACACACCCACGAAGGAAAATCCGAAGACCCAATCTTTGTTAT-AAA-ACACAAct 58
||||||||||||||| ||||||||||||||||||| ||||||||||| ||| ||||||||
Sbjct 13 AACAAACACACCCACAAAGGAAAATCCGAAGACCCGATCTTTGTTATAAAACACACAACT 72
Query 59 tctctctttttagaatctcttgtcttcttctttttacctttcttttgtaacctcttgtct 118
|||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||
Sbjct 73 TCTCTCTTTTTAGAATCTCTTGTCTTCTTCTTTTTAACTTTCTTTTGTAATCTCTTGTCT 132
Query 119 GAAAACGAAATGGATCATGTGAGTTCAAGCGATTTACTTATTGATGATCTTCTTGAAGAT 178
||||| |||||||||||||| |||||||| || ||||||||||||||||||||||| |||
Sbjct 133 GAAAAAGAAATGGATCATGTAAGTTCAAGTGAGTTACTTATTGATGATCTTCTTGAGGAT 192
Query 179 TACTGGTTCTTTGAGAACTTAATTACAAGAAGGTCAAGAGGCTTAAGTTATTGTCATTCA 238
||||||||||||||||||||| ||||||||||||| ||||||||||| |||||||| |||
Sbjct 193 TACTGGTTCTTTGAGAACTTATTTACAAGAAGGTCGAGAGGCTTAAGGTATTGTCACTCA 252
Query 239 GATCCTTA--CC-CTTCTTCTTCTACTTCAACTGCTGCTGAAAAAATGGGAGATTTAGAT 295
|||||||| || |||||||||||||||| ||| || |||||||||||||||||| ||||
Sbjct 253 GATCCTTACCCCTCTTCTTCTTCTACTTCGACTTCTCCTGAAAAAATGGGAGATTCAGAT 312
Query 296 -TCGGGGAATGTTCTAGAAGCTTCCACAGGACGATCTTTGATCAGGGCATCTTCTATAGA 354
| ||||| |||||||||||||||||||| |||||||| ||||||||||||||||||||
Sbjct 313 AT-TGGGAAGGTTCTAGAAGCTTCCACAGGGCGATCTTTAATCAGGGCATCTTCTATAGA 371
Query 355 TAGTAGAGAAGGCGGATCTCAGACGAAGCTGACGAGG-CAGTTCTCTGAAAAGATTAGGG 413
|||||||||||||||||||||||||||||||||| || | ||||||||||||||||||||
Sbjct 372 TAGTAGAGAAGGCGGATCTCAGACGAAGCTGACG-GGCCGGTTCTCTGAAAAGATTAGGG 430
Query 414 TTCAAGAACCGAGACACGTTGGGTCTTCCTTGCAGAAGAAGGAACCTGTAGTTCTTCCTA 473
||||||||| |||||| |||||||||||||||||||||||||||| ||| ||||||||||
Sbjct 431 TTCAAGAACAGAGACAAGTTGGGTCTTCCTTGCAGAAGAAGGAACATGTGGTTCTTCCTA 490
Query 474 AATCTGGATCTCGTTCGGCTCCGGGGAAGATTCAAGAAGCTTCCAAGAAAA-G-GGATTT 531
|||||||||||||||||||||||||||||||||||||||||||| | |||| | || |||
Sbjct 491 AATCTGGATCTCGTTCGGCTCCGGGGAAGATTCAAGAAGCTTCC-ACAAAACGTGG-TTT 548
Query 532 GATCCGGACACCTTCTTTGCCGCCTCAGATAGAAAAAAGAGATATGGACCGTGAGGCGAA 591
||||||| ||||||||||||||||||||||||||||| |||| |||||||| ||||| ||
Sbjct 549 GATCCGGGCACCTTCTTTGCCGCCTCAGATAGAAAAACGAGAGATGGACCGCGAGGCAAA 608
Query 592 GAAGATGATCAATAAGCTGACAAGGCAGTTCTCTGAGAAAATTAGGGTTCTAGAACCGAC 651
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 609 GAAGATGATCAATAAGCTGACAAGGCAGTTCTCTGAGAAGATTAGGGTTCTAGAACCGAC 668
Query 652 GAGGCCTGGTGAGCATTTCTTGCAGAAGAAGGAAACTATTGTTCGAGACAAAGGGATTAG 711
||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||
Sbjct 669 GAGGCCTGGTGAGCATTTCTTGCAGAAAAAGGAAACTATTGCTCGAGACAAAGGGATTAC 728
Query 712 TGAAAGTTCTAGAAGGAACAAAATAGGAagtagtagtagtagttatagtagtGGCAAGAT 771
||||||||||||||| ||||||| ||| | ||||| |||||||||||||||| ||||||
Sbjct 729 TGAAAGTTCTAGAAGCAACAAAACAGG-A--AGTAGCAGTAGTTATAGTAGTGTCAAGAT 785
Query 772 TAGTTTGCAAAGAACTCAAACGATGCCAAATAACATCAGAAGAGAAGAAGATAACGA-GA 830
||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||
Sbjct 786 CAGTTTGCAAAGAACTCAAACGATGCCAAATAACATGGGAAGAGAAGAAGATAACGAGGA 845
Query 831 TAGACGAGTTTGAAGATCAAGAAAGCGACTCAAGAATGGGATTTTTGATCCGTGAAGCCC 890
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 846 -AGACGAGTTTGAAGATCAAGAAAGCGACTCAAGAATGGGATTCTTGATCCGTGAAGCCC 904
Query 891 TCGCTAGCTCACATAATGTTCCAAAGGTTTCAAACAATCAAAGGCAGAGACCACCGAGAA 950
| ||||| |||||| |||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 905 TGGCTAGTTCACATTATGTTCCAAAGGTTTCAAACAATCAAAGGCAGAGACCACCAAGAA 964
Query 951 GCTTGAGATTAGAAGACACTGTTATGGTCAAACAAGGTGGCTCAAGTCCCAAAACGCTGC 1010
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 965 GCTTGAGATTAGAAGACACTGCTATGGTCAAACAAGGTGGCTCAAGTCCCAAAACGCTGC 1024
Query 1011 GTAAAACGTTAAGCAGCGTAGAAACATCCAAAGAGATTCAGAGGCAT-AGAGATTATGAC 1069
|||||||||||||||||||||||||| ||||||||||||| |||| | | || |||||||
Sbjct 1025 GTAAAACGTTAAGCAGCGTAGAAACAACCAAAGAGATTCAAAGGC-TGAAAGGTTATGAC 1083
Query 1070 CAACTGGTCGAGCCACGTGTCGCAAGCGGACTAGCTACACCACCTAGGGTTCCAAAGGAT 1129
|||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||
Sbjct 1084 CAACTGGTCGAGCCACGTGTCGCAAGTGGATTAGCTACACCACCTAGGGTTCCAAAGGAT 1143
Query 1130 TCAAGTAAAGAAATGAAGGATCAGATCAAGTTTTGGGCTCGAGCCGTAGCTACTAACGTC 1189
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1144 TCAAGTAAAGAAATGAAGGATCAGATCAAGTTTTGGGCTCGAGCCGTAGCTACTAATGTC 1203
Query 1190 CGACAAGAGTGCTAAGATTTTTCTTACACTAATTAACTGTGTTTCGTACATATATGATTC 1249
|||||||||||||||||||||||||||||||||||||||| ||||||||| || |||||
Sbjct 1204 CGACAAGAGTGCTAAGATTTTTCTTACACTAATTAACTGTATTTCGTACAGAT--GATTC 1261
Query 1250 TTATCGTGAACTCTTTTGTGTGtttt-tttttCTGATCCTCCTGAAATAATGAGATTCCT 1308
||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1262 TTATCTTGAACTCTTTTGTGTGTTTTGTTTTTCTGATCCTCCTGAAATAATGAGATTCCT 1321
Query 1309 CTGTTTATGTGATGATGATGTTCTTCCTTCTTTTTTG-GGGCAAGAAAAATGTCATGATT 1367
|||||||||||||||||||||||||| ||||||||| |||||||||||| |||||||||
Sbjct 1322 CTGTTTATGTGATGATGATGTTCTTC-TTCTTTTTTTTGGGCAAGAAAAAAGTCATGATT 1380
Query 1368 ATGATG 1373
|||||
Sbjct 1381 GTGATG 1386
> AT3G15115.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT1G53180.1);
Has 47 Blast hits to 47 proteins in 15 species: Archae - 0;
Bacteria - 0; Metazoa - 13; Fungi - 0; Plants - 30; Viruses
- 0; Other Eukaryotes - 4 (source: NCBI BLink). | chr3:5085992-5087489
REVERSE LENGTH=1384
Length=1384
Score = 78.7 bits (42), Expect = 1e-13
Identities = 104/132 (79%), Gaps = 11/132 (8%)
Strand=Plus/Plus
Query 773 AGTTTGCAAAGAACTCAAACGATGCCAAATAACATCA-GAAGAGAAGAAGATAACGAGAT 831
|||||||| |||||||| || |||| | | || | | |||||||||| ||| | |
Sbjct 618 AGTTTGCAGAGAACTCAGACTTTGCCTAGTTAC-TTAGGAAGAGAAGACGAT-----G-T 670
Query 832 AGACGAGTTTGAAGATCAAGA-A-AG-CGACTCAAGAATGGGATTTTTGATCCGTGAAGC 888
| | |||||| |||||||||| | | || |||||||||||||||||||||||||||||
Sbjct 671 AAATGAGTTTCAAGATCAAGAGATTGATGATTCAAGAATGGGATTTTTGATCCGTGAAGC 730
Query 889 CCTCGCTAGCTC 900
| |||||| |||
Sbjct 731 CATCGCTAACTC 742
Score = 54.7 bits (29), Expect = 2e-06
Identities = 49/59 (83%), Gaps = 0/59 (0%)
Strand=Plus/Plus
Query 909 TTCCAAAGGTTTCAAACAATCAAAGGCAGAGACCACCGAGAAGCTTGAGATTAGAAGAC 967
|||||||||||||| || || |||||| |||||||| |||| || |||| |||||||
Sbjct 787 TTCCAAAGGTTTCATGCATTCCAAGGCATAGACCACCTAGAAACTCAAGATCAGAAGAC 845
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 67620134115
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5