BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg474446
Length=2080
Score E
Sequences producing significant alignments: (Bits) Value
AT1G53210.1 | Symbols: | sodium/calcium exchanger family prote... 3000 0.0
> AT1G53210.1 | Symbols: | sodium/calcium exchanger family protein
/ calcium-binding EF hand family protein | chr1:19844632-19847836
FORWARD LENGTH=2219
Length=2219
Score = 3000 bits (1624), Expect = 0.0
Identities = 1846/1951 (95%), Gaps = 23/1951 (1%)
Strand=Plus/Plus
Query 40 AACGTCCTCCTTTGATTTTATC-TTTTTTGTTGTTTTCTTCTTTCGAAATCAATCATGAG 98
|||||||||||||||||| | | ||||||||||| |||||||||||||||||||||||||
Sbjct 104 AACGTCCTCCTTTGATTTCACCTTTTTTTGTTGTCTTCTTCTTTCGAAATCAATCATGAG 163
Query 99 ATTCAGAtctctcatctctctcctcttccttctcttcttcacttcatctGCTTACGCTCG 158
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 164 ATTCAGATCTCTCATCTCTCTCCTCTTCCTTCTCTTCTTCACTTCATCTGCTTACGCTCG 223
Query 159 ATTCGTCTCCCTCCACCCATCTTCAACGAGTCTTGTCTCCGATGGAATCGACGGTGGTTC 218
|||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 224 ATTCGTCTCCCTAAACCCATCTTCAACGAGTCTAATCTCCGATGGAATCGACGGTGGTTC 283
Query 219 AAATCTCGACGGTGGCTCCGGATCGGTTATCAAGACGGTTGTTTCGGCTCCGGCTGAGGA 278
|||||||| |||| |||||||||||||||||| |||||||||||||||||||||||||
Sbjct 284 AAATCTCGCCGGT---TCCGGATCGGTTATCAAGTCGGTTGTTTCGGCTCCGGCTGAGGA 340
Query 279 AAAGGAGGAAGCTTGTGAACAGACCTATGGGTTTATGCCGTGTACCAAGACCGCTCTTGG 338
|||||||||||||||||| ||||| || ||||||||||||||||| ||||||||||||||
Sbjct 341 AAAGGAGGAAGCTTGTGAGCAGACATACGGGTTTATGCCGTGTACTAAGACCGCTCTTGG 400
Query 339 AAACGTGTTTCTGATTTTGGTTTATGGGTTTCTCATGTTCACTGCCGCGACGTATCTCTC 398
||||||||||||||||||||||||||| ||||||||||| || || ||||||||||||||
Sbjct 401 AAACGTGTTTCTGATTTTGGTTTATGGATTTCTCATGTTTACGGCTGCGACGTATCTCTC 460
Query 399 TGCCGGAAGTGAGCTTCTTCTTGAGATCCTTGGCCCTGGAATTGTCGGTGGTTTGTTTCT 458
||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 461 TGCTGGAAGTGAGCTTCTTCTTGAGATCCTTGGACCTGGAATTGTCGGTGGTTTGTTTCT 520
Query 459 TCCTATGCTCGGTGCTCTTCCTGACGCTATGCTTATTATGGTGTCTGGACTTTCTGGAGA 518
||| ||||| |||||||||||||||||||||||||| |||||||||||||| ||||||||
Sbjct 521 TCCGATGCTTGGTGCTCTTCCTGACGCTATGCTTATCATGGTGTCTGGACTATCTGGAGA 580
Query 519 CGCAGCAACTGCTCAAAGCCAAGTTTCTGTGGGAATGGGTTTGCTTGCTGGCTCCACTGT 578
||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||
Sbjct 581 TGCAGCAACTGCTCAAAGCCAAGTCTCTGTGGGAATGGGTTTGCTTGCTGGTTCCACTGT 640
Query 579 TATGCTTCTCACTGTTATCTGGGGAACTTGCACTGTGGTTGGCAAGTGTGACCTTCGAGA 638
|||||||||||||||||||||||||||||| |||||||||||||||||||| ||||| ||
Sbjct 641 TATGCTTCTCACTGTTATCTGGGGAACTTGTACTGTGGTTGGCAAGTGTGATCTTCGTGA 700
Query 639 TTCTATTGCTGTTAACAACCAAGATACTAAAGG-TTTCCATCTTAAAGATTCTGGTGTAA 697
||| |||||||| ||||||||||| || ||||| ||| || || ||||||||||||||||
Sbjct 701 TTCAATTGCTGTAAACAACCAAGACACCAAAGGCTTT-CACCTAAAAGATTCTGGTGTAA 759
Query 698 CTGTTGATATTTGGACCAGCTATGCTGCAAGAATAATGGCTATATCAGTTATTCCGTTCG 757
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 760 CTGTTGATATTTGGACCAGCTATGCTGCAAGAATAATGGCTATATCAGTTATTCCGTTCG 819
Query 758 TCATTGTCCAGCTTCCGCAGATGTTGGGCTCTACATCTGGAAGACAATTGTCCGTGTTGG 817
||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct 820 TCATTGTCCAGCTTCCGCAGATGTTGGGCTCAACCTCTGGAAGACAATTGTCCGTGTTGA 879
Query 818 TTTCTCTAATCCTTTCAGTTCTTATGTTGATCTCTTACTGTGTATATCAGGTCTTCCAAC 877
|| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 880 TTGCTCTAATCCTTTCAGTTCTTATGTTGATCTCTTACTGTGTATATCAGGTATTCCAAC 939
Query 878 CGTGGATCCAAAGGAGACGGCTTGCTTTTGCAAAACACAAGCATGTTATATCAGGAATAC 937
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 940 CATGGATCCAAAGGAGACGGCTTGCTTTTGCAAAACACAAGCATGTTATATCAGGAATAC 999
Query 938 TAAAACACTTGAAACAACGTGCTCTGGGAAGGCTTCTTGATGATGAAGGTCAGCCTGATG 997
||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1000 TAAGGCACTTGAAACAACATGCTCTGGGAAGGCTTCTTGATGATGAAGGTCAGCCTGATG 1059
Query 998 AACATGTCATTCGAAGGTTGTTTGAGACAATTGATGCAAACAAGGACGGACACTTATCAG 1057
||||||||||||||| ||||||| |||||||||||||||||| ||||||||||| ||||
Sbjct 1060 AACATGTCATTCGAAAGTTGTTTTTGACAATTGATGCAAACAATGACGGACACTTGTCAG 1119
Query 1058 CGGCTGAACTAAAGGCGCTTATCATTGGGGTCAGCTTTGAGGAGATAGATTTTGACAAGG 1117
||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||
Sbjct 1120 CGGCTGAACTAAAGGCGCTTATCATTGGGATCAGCTTTGAGGATATAGATTTTGACAAGG 1179
Query 1118 ATGATGCTGTGGGAAAACTTCTCCAAGATTTTGATAAGACTCTTGATGAGCAAGTTGATG 1177
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1180 ATGATGCTGTGGGAAAAGTTCTCCAAGATTTTGATAAGACTCTTGATGAGCAAGTTGATC 1239
Query 1178 AAGAAGAGTTTGTCCGTGGAATTAAGCATTGGCTTATACAGGCAATGGGAGGTGCTCCAT 1237
|||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||
Sbjct 1240 AAGAAGAGTTTGTCCGTGGAATTAAGCAATGGCTTATCCAGGCAATGGGAGGTGCTCCAT 1299
Query 1238 CTGGTCCTGATGCCGGTCCTCGAACAATGAAAGTCCTTGACAATTTCCATGTGCAAGCAA 1297
|||||||||| || || ||||||||||||||| ||||||||||||||||||||||| |||
Sbjct 1300 CTGGTCCTGAAGCTGGCCCTCGAACAATGAAATTCCTTGACAATTTCCATGTGCAAACAA 1359
Query 1298 AGAGAGAGCATGCTCTGTTGGGAGATAACGAGAATGGTGAGAATGATGAGGAAGGCGAAG 1357
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1360 AGAGAGAGCATGCTTTGTTGGGAGATAACGAGAATGGTGAGAATGATGAGGAAGGC---G 1416
Query 1358 GCGGAGAGATTGCAGATCCAAAATGGGTCACCATTAAAGCAGCTCTGCTGCTACTGTTAG 1417
| ||| | ||||||| ||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1417 G-TGAG-G-TTGCAGACCCAAAATGGATCACCATTAAAGCAGCTCTGCTGCTACTGTTAG 1473
Query 1418 GAGCTGCCATTGCAGCTGCATTTGCTGATCCTTTAGTCGACACTGTTAACAACTTCTCCG 1477
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1474 GAGCTGCCATTGCAGCTGCATTTGCTGATCCTTTAGTCGACACTGTTAACAACTTCTCCG 1533
Query 1478 CAGCCACAGGGATCCCGTCTTTCTTCATTTCCTTCATAGCTTTGCCTTTGGCCACCAATT 1537
||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1534 CAGCCACAGGGATTCCGTCTTTCTTCATTTCCTTCATCGCTTTGCCTTTGGCCACCAATT 1593
Query 1538 CAAGTGAAGCTGTCTCTGCCATCATCTTCGCTTCCCGCAAAAAGATCAGAACCGCCTCTT 1597
|||||||||| || ||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1594 CAAGTGAAGCCGTGTCTGCCATCATCTTCGCATCCCGCAAAAAGATCAGAACCGCCTCTT 1653
Query 1598 TAACTTTCTCTGAGCTATGTGGTGGAGTGACAATGAACAACATTCTATGTCTCTCGGTGT 1657
|||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1654 TAACTTTCTCCGAGCTATGTGGTGGAGTGACAATGAACAACATTCTGTGTCTCTCGGTGT 1713
Query 1658 TCTTAGCGATCGTCTACGTTCGAGGACTAACATGGAACTTCTCATCAGAAGTGTTAGTGA 1717
||||||| |||||||||||||||||||| |||||||||||||||||||||||||| ||||
Sbjct 1714 TCTTAGCAATCGTCTACGTTCGAGGACTGACATGGAACTTCTCATCAGAAGTGTTGGTGA 1773
Query 1718 TTCTCATCGTTTGTCTGGTGATGGGTGGTTTCGCGAGTTTCCGCACAACTTATCCTCTTT 1777
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1774 TTCTCATCGTTTGTCTGGTGATGGGCGGTTTCGCGAGTTTCCGCACAACTTATCCTCTTT 1833
Query 1778 GGACATGTTTCATAGCTTACTTGCTTTACCCATTCTCCTTGGGTCTGGTCTATATTCTTG 1837
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1834 GGACATGTTTCATAGCTTACTTGCTTTACCCATTCTCCTTGGGTCTGGTCTATATTCTTG 1893
Query 1838 ATTACTGGTTTGGCTGGTCGTAGAGATCACACTCTGTTCAAAGAGTTTGTCC-ACATGAG 1896
|||||||||||||||||||||||| ||||| ||||||||||||||||||| | | |||||
Sbjct 1894 ATTACTGGTTTGGCTGGTCGTAGATATCACTCTCTGTTCAAAGAGTTTGTTCTA-ATGAG 1952
Query 1897 TGAGTTTCTTCTCGCGTG-TTTCGTTTCTTCTCTA--TATATGT-T-TAT--GGATT-TG 1948
||||| ||||| |||||| |||||||||||||||| ||||| | | ||| ||||| |
Sbjct 1953 TGAGTGTCTTCGCGCGTGGTTTCGTTTCTTCTCTACATATATATATATATATGGATTCTC 2012
Query 1949 AGAGTGTAAAAACTTAAATTCTGAGATTTGT 1979
||||||||||||||||||||||||||||||
Sbjct 2013 -GAGTGTAAAAACTTAAATTCTGAGATTTGT 2042
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 103111919430
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5