BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg474447
Length=1604
Score E
Sequences producing significant alignments: (Bits) Value
AT1G53230.1 | Symbols: TCP3 | TEOSINTE BRANCHED 1, cycloidea an... 2285 0.0
AT1G53233.1 | Symbols: | other RNA | chr1:19850031-19852127 FO... 1914 0.0
AT3G15030.1 | Symbols: TCP4, MEE35 | TCP family transcription f... 115 1e-24
> AT1G53230.1 | Symbols: TCP3 | TEOSINTE BRANCHED 1, cycloidea
and PCF transcription factor 3 | chr1:19849788-19851725 REVERSE
LENGTH=1844
Length=1844
Score = 2285 bits (1237), Expect = 0.0
Identities = 1447/1544 (94%), Gaps = 32/1544 (2%)
Strand=Plus/Plus
Query 1 AACGACTCTGGATTCCTCGGCGGTTAACGACCGCCGTCGCCGCCGTCGTCATAACCCAAC 60
||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||
Sbjct 185 AACGACTCTGGATTCCTCGGCGGTTAACGACCGCCGTCGCCGCCGCCGTCATAATCCAAC 244
Query 61 CACCACAACCATCAACGACCTTGAATTTCCTCAATATGCTTCATCAATGGCACCAGATAA 120
|||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 245 CACCACCACCATCAACGACCTTGAATTTCCACAATATGCTTCATCAATGGCACCAGATAA 304
Query 121 CGACCATTTAATAGATTCTCCGTCGCCGCCTCTTCTTGAGATGAGACACCACCAATCGGC 180
||||||||| ||||||||||||||||||||||||| |||||||||||||||||||| ||
Sbjct 305 CGACCATTTCTTAGATTCTCCGTCGCCGCCTCTTCTAGAGATGAGACACCACCAATCAGC 364
Query 181 GACGGAGAACGGTGGTGGTTGCGGCGAGATTGTGGAGGTTCAAGGAGGTCACATTGTTCG 240
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 365 GACGGAGAACGGTGGTGGTTGCGGCGAGATTGTGGAGGTACAAGGAGGTCACATTGTTCG 424
Query 241 GTCAACAGGAAGAAAAGACAGACATAGTAAAGTCTGTACAGCGAAAGGACCACGTGACCG 300
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 425 GTCAACAGGAAGAAAAGACAGACATAGTAAAGTATGTACAGCGAAAGGACCACGTGACCG 484
Query 301 GCGCGTGAGGCTCTCTGCTCCGACGGCGATTCAATTCTACGATGTTCAAGATAGGCTTGG 360
||||||||| ||||| |||||||||||||||||||||||||||||||||||||| |||||
Sbjct 485 GCGCGTGAGACTCTCAGCTCCGACGGCGATTCAATTCTACGATGTTCAAGATAGACTTGG 544
Query 361 TTTTGATCGACCAAGTAAAGCTGTTGATTGGCTTATTACTAAAGCTAAATCCGCCATTGA 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 545 TTTTGATCGACCAAGTAAAGCTGTTGATTGGCTTATTACTAAAGCTAAATCCGCCATTGA 604
Query 421 TGATCTCGCTCAGCTTCCTCCTTGGAACCCCGCCGATACACTTCGTCAACACGCCGCCGC 480
|||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 605 TGATCTTGCTCAGCTTCCTCCTTGGAACCCCGCCGATACTCTTCGTCAACACGCCGCCGC 664
Query 481 TGCTGCTAACGCTAAACCCAGAAAAACCAAAACTTTAGTTTCTCCGCCGCCGCTGCCACA 540
||||||||||||||||||||||||||||||||||||| |||||||||| | | ||||||
Sbjct 665 TGCTGCTAACGCTAAACCCAGAAAAACCAAAACTTTAATTTCTCCGCC-AC-C-GCCACA 721
Query 541 ACCTCCGCCGCACGAAGAAACAGAGCATCATCATCAACAAATCGGAGAAGAAGAAGTTAA 600
| ||| |||||||||||| |||||| | ||||||||||||||||| |||
Sbjct 722 A------CCG---GAAGAAACAGAG---CATCAT---CGAATCGGAGAAGAAGAAGATAA 766
Query 601 CGAATCGAGTTTTCTTCCCGCGTCAATGGATTCTGATTCGATAGCTGACACTATAAAGTC 660
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 767 CGAATCGAGTTTTCTTCCGGCGTCAATGGATTCTGATTCGATAGCTGACACTATAAAGTC 826
Query 661 GTTTTTTCCGGTAGCTTCAACGCAACAGAGCTATCATCATCAGCCACCGTCACGAGCCAA 720
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 827 GTTTTTTCCGGTAGCTTCAACGCAACAGAGCTATCATCATCAGCCACCGTCACGAGGCAA 886
Query 721 TACACAGAACCAAGATCTTCTTCGTCTCTCGCTTCAATCTTTTCAAAATGGTCCACCTTT 780
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 887 TACACAGAACCAAGATCTTCTTCGTCTCTCGCTTCAATCTTTCCAAAATGGTCCACCTTT 946
Query 781 TCCCAACCAAACAGAGCCTGCTCTGTTCTCCGGCCAGAGCAATAATCCGTTAGGGTTTGA 840
||| || |||||||| ||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 947 TCCTAATCAAACAGAACCTGCTCTGTTCTCCGGCCAGAGCAATAATCAGTTAGCGTTTGA 1006
Query 841 CACATCGACGGCAAGCTGGGAACAGAATCATCAGTCACCGGAATTTGGAAAGATACAGAG 900
| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1007 CTCATCGACGGCAAGCTGGGAACAGAGTCATCAGTCACCGGAATTTGGAAAGATACAGAG 1066
Query 901 ACTGGTGACATGGAACAACGGCGGAGCAGCTGATTCCGCCGGAA---CCGGAGGAGTTGT 957
||| ||| |||||||||||| |||||||||||| |||||||||| |||||||| ||||
Sbjct 1067 ACTAGTGTCATGGAACAACGTCGGAGCAGCTGAATCCGCCGGAAGTACCGGAGGATTTGT 1126
Query 958 GTTTGCTTCTCCGTCGTCGTTGCAGCCAGTTTTTAGCCAAAGTCAGCTTTTATCTCAGAG 1017
|||||||||||||||||||||||| ||||||| ||||||||||||||||||||| |||||
Sbjct 1127 GTTTGCTTCTCCGTCGTCGTTGCATCCAGTTTATAGCCAAAGTCAGCTTTTATCACAGAG 1186
Query 1018 GGGTCCCCTTCAGTCCATTAACACACCTATGATTCGTGCTTGGTTTGATCCtcaccatca 1077
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1187 GGGTCCCCTTCAGTCCATTAACACACCTATGATTCGTGCTTGGTTTGATCCTCACCATCA 1246
Query 1078 tcatcatcatca---g---tccattaccactgacgatctccaccaccatcatcc-tcacc 1130
|||||||||||| | ||||| |||||||||||||||||||| |||||||| | |||
Sbjct 1247 TCATCATCATCATCAGCAGTCCATGACCACTGACGATCTCCACCATCATCATCCCT-ACC 1305
Query 1131 atATTCCTCCGGGGATTCACCAATCAGCGATTCCAGGCATTGCATTTGCTTCAAGTGGTG 1190
|||| ||||| |||||||||||||| || |||||||||||||||||||||||||||||||
Sbjct 1306 ATATCCCTCCCGGGATTCACCAATCTGCTATTCCAGGCATTGCATTTGCTTCAAGTGGTG 1365
Query 1191 AATTCTCCGGTTTTCGTATACCAGCACGGTTTCAGGGCGAACAAGAGGAGCATGGCGGCG 1250
|||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||
Sbjct 1366 AATTCTCCGGTTTTCGTATACCAGCACGGTTTCAAGGCGAACAAGAGGAGCACGGCGGCG 1425
Query 1251 ACAACAAGCCGTCGTCTGCTTCATCCGATTCTCGCCATTGAACAAGTTCCAAAAACACAT 1310
||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1426 ACAACAAGCCGTCCTCTGCTTCATCCGATTCTCGCCATTAAACAAGTTCCAAAAACACAT 1485
Query 1311 AAGAATCTGCAACACTACTGGTTTCTTTTCATATTTCAGGGCGCTTCGAATGCGTGTAAT 1370
|||| | |||||||| || |||||||||||||||| |||||||||||||||||||| |||
Sbjct 1486 AAGATTGTGCAACACAACAGGTTTCTTTTCATATTCCAGGGCGCTTCGAATGCGTGGAAT 1545
Query 1371 AGGGAAGACGTTTTTCGTTGTTGTGTGTTTCGGATATTCAAATGGCCTATAAATCTGATC 1430
|| |||| || ||||||||||||||||||||| |||| ||||||||||||||||||||||
Sbjct 1546 AGTGAAGGCGGTTTTCGTTGTTGTGTGTTTCGAATATCCAAATGGCCTATAAATCTGATC 1605
Query 1431 AACAGTTTCAGGTTCATCTTAA-TCTTCTAAA-GCCTAGGCCTTTGTTAATTTGAGTTCA 1488
||||||||||||||| |||||| |||| |||| ||||||||||| |||||||||| ||||
Sbjct 1606 AACAGTTTCAGGTTCTTCTTAAGTCTT-TAAAAGCCTAGGCCTTGGTTAATTTGAATTCA 1664
Query 1489 TCTTGTATCAATTAGAAAACTTTCTGTTAGTTCAATTATGTTTT 1532
|||||||||||||||| ||| |||||| ||||||||| ||||||
Sbjct 1665 TCTTGTATCAATTAGAGAACGTTCTGTAAGTTCAATTCTGTTTT 1708
> AT1G53233.1 | Symbols: | other RNA | chr1:19850031-19852127
FORWARD LENGTH=1938
Length=1938
Score = 1914 bits (1036), Expect = 0.0
Identities = 1199/1273 (94%), Gaps = 29/1273 (2%)
Strand=Plus/Minus
Query 1 AACGACTCTGGATTCCTCGGCGGTTAACGACCGCCGTCGCCGCCGTCGTCATAACCCAAC 60
||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||
Sbjct 1352 AACGACTCTGGATTCCTCGGCGGTTAACGACCGCCGTCGCCGCCGCCGTCATAATCCAAC 1293
Query 61 CACCACAACCATCAACGACCTTGAATTTCCTCAATATGCTTCATCAATGGCACCAGATAA 120
|||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1292 CACCACCACCATCAACGACCTTGAATTTCCACAATATGCTTCATCAATGGCACCAGATAA 1233
Query 121 CGACCATTTAATAGATTCTCCGTCGCCGCCTCTTCTTGAGATGAGACACCACCAATCGGC 180
||||||||| ||||||||||||||||||||||||| |||||||||||||||||||| ||
Sbjct 1232 CGACCATTTCTTAGATTCTCCGTCGCCGCCTCTTCTAGAGATGAGACACCACCAATCAGC 1173
Query 181 GACGGAGAACGGTGGTGGTTGCGGCGAGATTGTGGAGGTTCAAGGAGGTCACATTGTTCG 240
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1172 GACGGAGAACGGTGGTGGTTGCGGCGAGATTGTGGAGGTACAAGGAGGTCACATTGTTCG 1113
Query 241 GTCAACAGGAAGAAAAGACAGACATAGTAAAGTCTGTACAGCGAAAGGACCACGTGACCG 300
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1112 GTCAACAGGAAGAAAAGACAGACATAGTAAAGTATGTACAGCGAAAGGACCACGTGACCG 1053
Query 301 GCGCGTGAGGCTCTCTGCTCCGACGGCGATTCAATTCTACGATGTTCAAGATAGGCTTGG 360
||||||||| ||||| |||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1052 GCGCGTGAGACTCTCAGCTCCGACGGCGATTCAATTCTACGATGTTCAAGATAGACTTGG 993
Query 361 TTTTGATCGACCAAGTAAAGCTGTTGATTGGCTTATTACTAAAGCTAAATCCGCCATTGA 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 992 TTTTGATCGACCAAGTAAAGCTGTTGATTGGCTTATTACTAAAGCTAAATCCGCCATTGA 933
Query 421 TGATCTCGCTCAGCTTCCTCCTTGGAACCCCGCCGATACACTTCGTCAACACGCCGCCGC 480
|||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 932 TGATCTTGCTCAGCTTCCTCCTTGGAACCCCGCCGATACTCTTCGTCAACACGCCGCCGC 873
Query 481 TGCTGCTAACGCTAAACCCAGAAAAACCAAAACTTTAGTTTCTCCGCCGCCGCTGCCACA 540
||||||||||||||||||||||||||||||||||||| |||||||||| | | ||||||
Sbjct 872 TGCTGCTAACGCTAAACCCAGAAAAACCAAAACTTTAATTTCTCCGCC-AC-C-GCCACA 816
Query 541 ACCTCCGCCGCACGAAGAAACAGAGCATCATCATCAACAAATCGGAGAAGAAGAAGTTAA 600
| ||| |||||||||||| |||||| | ||||||||||||||||| |||
Sbjct 815 A------CCG---GAAGAAACAGAG---CATCAT---CGAATCGGAGAAGAAGAAGATAA 771
Query 601 CGAATCGAGTTTTCTTCCCGCGTCAATGGATTCTGATTCGATAGCTGACACTATAAAGTC 660
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 770 CGAATCGAGTTTTCTTCCGGCGTCAATGGATTCTGATTCGATAGCTGACACTATAAAGTC 711
Query 661 GTTTTTTCCGGTAGCTTCAACGCAACAGAGCTATCATCATCAGCCACCGTCACGAGCCAA 720
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 710 GTTTTTTCCGGTAGCTTCAACGCAACAGAGCTATCATCATCAGCCACCGTCACGAGGCAA 651
Query 721 TACACAGAACCAAGATCTTCTTCGTCTCTCGCTTCAATCTTTTCAAAATGGTCCACCTTT 780
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 650 TACACAGAACCAAGATCTTCTTCGTCTCTCGCTTCAATCTTTCCAAAATGGTCCACCTTT 591
Query 781 TCCCAACCAAACAGAGCCTGCTCTGTTCTCCGGCCAGAGCAATAATCCGTTAGGGTTTGA 840
||| || |||||||| ||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 590 TCCTAATCAAACAGAACCTGCTCTGTTCTCCGGCCAGAGCAATAATCAGTTAGCGTTTGA 531
Query 841 CACATCGACGGCAAGCTGGGAACAGAATCATCAGTCACCGGAATTTGGAAAGATACAGAG 900
| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 530 CTCATCGACGGCAAGCTGGGAACAGAGTCATCAGTCACCGGAATTTGGAAAGATACAGAG 471
Query 901 ACTGGTGACATGGAACAACGGCGGAGCAGCTGATTCCGCCGGAA---CCGGAGGAGTTGT 957
||| ||| |||||||||||| |||||||||||| |||||||||| |||||||| ||||
Sbjct 470 ACTAGTGTCATGGAACAACGTCGGAGCAGCTGAATCCGCCGGAAGTACCGGAGGATTTGT 411
Query 958 GTTTGCTTCTCCGTCGTCGTTGCAGCCAGTTTTTAGCCAAAGTCAGCTTTTATCTCAGAG 1017
|||||||||||||||||||||||| ||||||| ||||||||||||||||||||| |||||
Sbjct 410 GTTTGCTTCTCCGTCGTCGTTGCATCCAGTTTATAGCCAAAGTCAGCTTTTATCACAGAG 351
Query 1018 GGGTCCCCTTCAGTCCATTAACACACCTATGATTCGTGCTTGGTTTGATCCtcaccatca 1077
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 350 GGGTCCCCTTCAGTCCATTAACACACCTATGATTCGTGCTTGGTTTGATCCTCACCATCA 291
Query 1078 tcatcatcatca---g---tccattaccactgacgatctccaccaccatcatcc-tcacc 1130
|||||||||||| | ||||| |||||||||||||||||||| |||||||| | |||
Sbjct 290 TCATCATCATCATCAGCAGTCCATGACCACTGACGATCTCCACCATCATCATCCCT-ACC 232
Query 1131 atATTCCTCCGGGGATTCACCAATCAGCGATTCCAGGCATTGCATTTGCTTCAAGTGGTG 1190
|||| ||||| |||||||||||||| || |||||||||||||||||||||||||||||||
Sbjct 231 ATATCCCTCCCGGGATTCACCAATCTGCTATTCCAGGCATTGCATTTGCTTCAAGTGGTG 172
Query 1191 AATTCTCCGGTTTTCGTATACCAGCACGGTTTCAGGGCGAACAAGAGGAGCATGGCGGCG 1250
|||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||
Sbjct 171 AATTCTCCGGTTTTCGTATACCAGCACGGTTTCAAGGCGAACAAGAGGAGCACGGCGGCG 112
Query 1251 ACAACAAGCCGTC 1263
|||||||||||||
Sbjct 111 ACAACAAGCCGTC 99
> AT3G15030.1 | Symbols: TCP4, MEE35 | TCP family transcription
factor 4 | chr3:5061681-5064115 FORWARD LENGTH=2209
Length=2209
Score = 115 bits (62), Expect = 1e-24
Identities = 71/75 (95%), Gaps = 2/75 (3%)
Strand=Plus/Plus
Query 599 AACGAATCGAGTTTTCTTCCCG-CGTCAATGGATTCTGATTCGATAGCTGACACTATAAA 657
||||| |||||||||| ||||| ||||||||||||| |||||||||||||||||||||||
Sbjct 979 AACGAGTCGAGTTTTC-TCCCGCCGTCAATGGATTCAGATTCGATAGCTGACACTATAAA 1037
Query 658 GTCGTTTTTTCCGGT 672
|||||||||||||||
Sbjct 1038 GTCGTTTTTTCCGGT 1052
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 79216460010
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5