BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg474449
Length=1422
Score E
Sequences producing significant alignments: (Bits) Value
AT1G53240.1 | Symbols: mMDH1 | Lactate/malate dehydrogenase fam... 2206 0.0
AT3G15020.1 | Symbols: mMDH2 | Lactate/malate dehydrogenase fam... 1022 0.0
AT5G09660.4 | Symbols: PMDH2 | peroxisomal NAD-malate dehydroge... 93.5 5e-18
> AT1G53240.1 | Symbols: mMDH1 | Lactate/malate dehydrogenase family
protein | chr1:19854615-19856937 REVERSE LENGTH=1512
Length=1512
Score = 2206 bits (1194), Expect = 0.0
Identities = 1315/1373 (96%), Gaps = 9/1373 (1%)
Strand=Plus/Plus
Query 16 CAGCTTCTTCAAGCTCACTCTTTCCTCTCCAGAAGAAACCCTAGAAATCTCATCG-CAAA 74
||| ||| || |||||||||||||||||||||||||||||||||| ||||||||| ||||
Sbjct 77 CAGATTCGTC-AGCTCACTCTTTCCTCTCCAGAAGAAACCCTAGACATCTCATCGCCAAA 135
Query 75 TATGTTCAGATCTATGCTCGTCCGATCTTCTTCCTCTGCGAAGCAGGCGGTTATCCGCCG 134
|||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||
Sbjct 136 -ATGTTCAGATCTATGCTCGTCCGATCTTCTGCCTCCGCGAAGCAGGCGGTTATCCGCCG 194
Query 135 TAGCTTCTCCTCCGGTTCCGTCCCCGAGCGTAAAGTCGCCATCCTCGGTGCCGCCGGTGG 194
||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 195 TAGCTTCTCCTCCGGCTCCGTCCCCGAGCGTAAAGTCGCCATCCTTGGTGCCGCCGGTGG 254
Query 195 AATTGGTCAGCCTCTTGCTCTCCTCATGAAGCTTAATCCTCTTGTCTCTTCTCTCTCCCT 254
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 255 AATTGGTCAGCCTCTTGCTCTCCTCATGAAGCTTAATCCTCTTGTCTCTTCCCTCTCCCT 314
Query 255 CTACGATATCGCTAACACTCCTGGAGTTGCCGCTGATGTCGGTCACATCAACACCAGATC 314
|||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||
Sbjct 315 CTACGATATCGCTAACACTCCTGGAGTTGCTGCTGATGTTGGTCACATCAACACCAGATC 374
Query 315 TGAGGTTGTTGGATACATGGGCGATGATAACTTGGCCAAAGCTCTTGAAGGAGCTGATCT 374
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 375 TGAGGTTGTTGGATACATGGGCGATGATAACTTGGCCAAAGCTCTTGAAGGAGCTGATCT 434
Query 375 CGTTATTATTCCAGCTGGTGTACCAAGGAAGCCTGGTATGACCCGTGACGATCTTTTCAA 434
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 435 CGTTATCATTCCAGCTGGTGTACCAAGGAAGCCTGGTATGACCCGTGACGATCTTTTCAA 494
Query 435 CATTAACGCTGGAATTGTCAAGAACCTTTGCACTGCCATCGCCAAGTACTGCCCACATGC 494
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 495 CATTAATGCTGGAATTGTCAAGAACCTTTGCACTGCCATCGCCAAGTACTGCCCACATGC 554
Query 495 ACTTATTAACATGATCAGCAACCCTGTGAACTCTACTGTTCCAATCGCAGCTGAGATATT 554
|||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 555 GCTTATTAATATGATCAGCAACCCTGTGAACTCTACTGTTCCAATTGCAGCTGAGATATT 614
Query 555 CAAGAAGGCTGGTATGTACAATGAAAAGAAATTGTTTGGTGTTACCACTCTTGACGTTGT 614
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||
Sbjct 615 TAAGAAGGCTGGTATGTACGATGAAAAGAAATTGTTTGGTGTTACCACTCTTGACGTCGT 674
Query 615 CAGGGCCAAGACTTTCTATGCGGGAAAGGCCAATGTCCCAGTTGCAGAAGTTAATGTTCC 674
|||||||| |||||||||||| |||||||| |||||||||||||||||||||||||||||
Sbjct 675 CAGGGCCAGGACTTTCTATGCTGGAAAGGCAAATGTCCCAGTTGCAGAAGTTAATGTTCC 734
Query 675 GGTGATTGGTGGTCATGCTGGGGTTACTATTCTCCCTCTCTTCTCTCAGGCCACTCCTCA 734
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 735 GGTGATTGGTGGTCATGCTGGGGTTACTATTCTCCCTCTCTTCTCTCAGGCAACTCCTCA 794
Query 735 AGCCAATTTGTCAAGTGACGTACTCACTGCCCTCACTAAGCGTACCCAAGATGGAGGTAC 794
|||||| |||||||||||| |||| || ||||| ||||||||||||||||||||||||||
Sbjct 795 AGCCAACTTGTCAAGTGACATACTTACCGCCCTTACTAAGCGTACCCAAGATGGAGGTAC 854
Query 795 AGAAGTCGTGGAGGCAAAAGCTGGAAAAGGTTCAGCTACATTGTCAATGGCCTATGCTGG 854
||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||| ||
Sbjct 855 AGAAGTCGTGGAGGCAAAAGCAGGAAAAGGTTCAGCTACATTGTCCATGGCCTATGCCGG 914
Query 855 AGCATTATTCGCTGATGCGTGCTTGAAAGGACTCAACGGTGTTCCAGATGTCATAGAATG 914
|||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 915 AGCATTGTTCGCTGATGCATGCTTGAAAGGACTCAACGGTGTTCCAGATGTCATAGAATG 974
Query 915 CTCATACGTGCAATCAACAATCACCGAGCTTCCTTTCTTTGCCTCGAAGGTGAGGTTGGG 974
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 975 CTCATACGTGCAATCTACAATCACCGAGCTTCCTTTCTTTGCCTCGAAGGTGAGGTTGGG 1034
Query 975 GAAGAACGGCGTGGAGGAGGTTCTTGACTTGGGGCCACTCTCAGACTTTGAGAAGGAAGG 1034
|||||| || ||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1035 GAAGAATGGTGTGGAGGAGGTTCTTGACTTGGGACCACTCTCAGACTTTGAGAAGGAAGG 1094
Query 1035 CTTGGAAGCATTGAAGCCAGAACTCAAATCCTCCATCGAAAAGGGAGTCAAGTTTGCCAA 1094
||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||
Sbjct 1095 CTTGGAAGCATTGAAGCCAGAACTCAAGTCCTCCATAGAAAAGGGAGTCAAGTTTGCCAA 1154
Query 1095 CCAGTGATTAAACCGACTTGACTCGGTAATTTTTCCAATTTTCCAGCTAGAGTTGCCTCC 1154
|||||||||||||||| || ||||||||||||||||||||||||||||||||||||| ||
Sbjct 1155 CCAGTGATTAAACCGAGTTTACTCGGTAATTTTTCCAATTTTCCAGCTAGAGTTGCCACC 1214
Query 1155 TCCTCTTTCATCGGGTTGTATCAATAAAAA-TCCATGTTTGTGCCTCCATTAGTGAAACC 1213
||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1215 TCCTCCTTCATCGGGTTGTATCAATAAAAAATCCATGTTTGTGCCTCCATTAGTGAAACC 1274
Query 1214 ATAAGGCTCTTT--GGTTAATCACCAAACACAAAGTAAAACTGTAACATGTCAA-GTTAT 1270
|||||||||||| ||||||||||||||| ||||| |||||||||||||||||| ||| |
Sbjct 1275 ATAAGGCTCTTTTTGGTTAATCACCAAACTCAAAGAAAAACTGTAACATGTCAAAGTTGT 1334
Query 1271 GATTCTTTCTTCCTTTTTGGAACCATGCGACtttttttttCCATGAACAAGAGATCATAA 1330
|||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||
Sbjct 1335 AATTCTTTCTTCCTTTTTGGAACCATGCGACTTTTTTTT-C-ATGAACAAGAGATCATAA 1392
Query 1331 GTGTGGGTTGGTTCCTTCTTAATGCTGAGTCTGTGTTACCATACTTTCTGTTT 1383
||||||||||||||||| ||||||||| |||||||| ||||||||||||||||
Sbjct 1393 GTGTGGGTTGGTTCCTTTTTAATGCTGCGTCTGTGTCACCATACTTTCTGTTT 1445
> AT3G15020.1 | Symbols: mMDH2 | Lactate/malate dehydrogenase family
protein | chr3:5056068-5058248 FORWARD LENGTH=1404
Length=1404
Score = 1022 bits (553), Expect = 0.0
Identities = 882/1041 (85%), Gaps = 22/1041 (2%)
Strand=Plus/Plus
Query 72 AAATATGTTCAGATCTATGCTCGTCCGATCTTCTTCCTCTGCGAAGCAGGCG-GTTATCC 130
||| |||||| |||| ||| | || |||||| ||||| | | |||||||| | || |||
Sbjct 68 AAAAATGTTCCGATCAATGATTGTTCGATCTGCTTCCCCAGTGAAGCAGG-GTCTTCTCC 126
Query 131 GCCGTA-GCTTCTCCTCCGGTTCCGTCCCCGAGCGTAAAGTCGCCATCCTCGGTGCCGCC 189
|| | | | ||| |||| | || || ||||| || ||||||| ||||||||||||||||
Sbjct 127 GCAG-AGGATTCGCCTCTGAATCTGTTCCCGATCGCAAAGTCGTCATCCTCGGTGCCGCC 185
Query 190 GGTGGAATTGGTCAGCCTCTTGCTCTCCTCATGAAGCTTAATCCTCTTGTCTCTTCTCTC 249
||||| || || ||||| ||| |||| |||||||||||||| ||||| ||||||||||||
Sbjct 186 GGTGGGATCGGCCAGCCACTTTCTCTTCTCATGAAGCTTAACCCTCTCGTCTCTTCTCTC 245
Query 250 TCCCTCTACGATATCGCTAACACTCCTGGAGTTGCCGCTGATGTCGGTCACATCAACACC 309
|||||||| |||||||| |||||||| || ||||| ||||| ||||||||||||||||||
Sbjct 246 TCCCTCTATGATATCGCCAACACTCCCGGCGTTGCTGCTGACGTCGGTCACATCAACACC 305
Query 310 AGATCTGAGGTTGT-TGGATACATGGGCGATGATAACTTGGCCAAAGCTCTTGAAGGAGC 368
||||| ||||| | ||| |||||||| |||||| | |||| |||||||| ||||| ||
Sbjct 306 CGATCTCAGGTT-TCTGGGTACATGGGTGATGATGATTTGGGGAAAGCTCTAGAAGGCGC 364
Query 369 TGATCTCGTTATTATTCCAGCTGGTGTACCAAGGAAGCCTGGTATGACCCGTGACGATCT 428
||| ||||| ||||||||||||||||| |||||||||||||| ||||||||||| |||||
Sbjct 365 TGACCTCGTCATTATTCCAGCTGGTGTCCCAAGGAAGCCTGGCATGACCCGTGATGATCT 424
Query 429 TTTCAACATTAACGCTGGAATTGTCAAGAACCTTTGCACT-GCCATCGCCAAGTACTGCC 487
||||||||| || ||||| |||||||||||||| ||| | |||||||||||||| ||||
Sbjct 425 TTTCAACATCAATGCTGGCATTGTCAAGAACCTCAGCA-TCGCCATCGCCAAGTATTGCC 483
Query 488 CACATGCACTTATTAACATGATCAGCAACCCTGTGAACTCTACTGTTCCAATCGCAGCTG 547
|||| |||||| | |||||||||||||||||||||||||| ||||||||||| |||||||
Sbjct 484 CACAAGCACTTGTCAACATGATCAGCAACCCTGTGAACTCCACTGTTCCAATTGCAGCTG 543
Query 548 AGATATTCAAGAAGGCTGGTATGTACAATGAAAAGAAATTGTTTGGTGTTACCACTCTTG 607
|||| || ||||||||||||| || |||| |||||||| || ||||| ||||||||||
Sbjct 544 AGATTTTTAAGAAGGCTGGTACCTATGATGAGAAGAAATTATTCGGTGTCACCACTCTTG 603
Query 608 ACGTTGTCAGGGCCAAGACTTTCTATGCGGGAAAGGCCAATGTCCCA-GTTGCAGAAGTT 666
| ||||||||||| | |||||||||||| ||||| | |||| | | |||||||| |||
Sbjct 604 ATGTTGTCAGGGCTAGGACTTTCTATGCTGGAAAATCGGATGT-CAATGTTGCAGAGGTT 662
Query 667 AATGTTCC-GGTGATTGGTGGTCATGCTGGGGTTACTATTCTCCCTCTCTTCTCTCAGGC 725
|||||||| | || |||||||||||||||| | || ||||| |||||||| ||||||||
Sbjct 663 AATGTTCCAGTTG-TTGGTGGTCATGCTGGCATCACGATTCTTCCTCTCTTTTCTCAGGC 721
Query 726 CA-CTCCTCAAGCCAATTTGTCAAG-TGACGTACTCACTGCCCTCACTAAGCGTACCCAA 783
| | ||||||||||| ||||| | ||| || ||| |||||||| |||||||||||
Sbjct 722 TAGC-CCTCAAGCCAACTTGTC-GGATGATTTAATCAGGGCCCTCACAAAGCGTACCCAG 779
Query 784 GATGGAGGTACAGAAGTCGTGGAGGCAAAAGCTGGAAAAGGTTCAGCTACATTGTCAATG 843
|| ||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 780 GACGGAGGGACAGAAGTCGTGGAGGCAAAAGCTGGAAAGGGTTCAGCTACATTGTCAATG 839
Query 844 GCCTATGCTGGAGCATTATTCGCTGATGCGTGCTTGAAAGG-ACTCAACGGTGTTCCAGA 902
|||||||| |||||| | || |||||||| ||||| ||||| |||||||||||||||| |
Sbjct 840 GCCTATGCGGGAGCACTCTTTGCTGATGCATGCTT-AAAGGGACTCAACGGTGTTCCAAA 898
Query 903 TGTCATAGAATGCTCATACGTGCAATCAACAATCACCGAGCTTCCTTTCTTTGCCTCGAA 962
||| | |||||||||| ||| ||||| || |||||||||||||||||||| ||||| ||
Sbjct 899 TGTGGTGGAATGCTCATTCGTCCAATCTACCATCACCGAGCTTCCTTTCTTCGCCTCAAA 958
Query 963 GGTGAGGTTGGGGAAGAACGGCGTGGAGGAGGTTCTTGA-CTTGGGGCCACTCTCAGACT 1021
||| || |||| |||||||| |||||||| || || || || ||| |||||||||||||
Sbjct 959 GGTAAGACTGGGAAAGAACGGAGTGGAGGAAGTGCTAGATCTAGGG-CCACTCTCAGACT 1017
Query 1022 TTGAGAAGGAAGGCTTGGAAGCATTGAAGCCAGAACTCAAATCCTCCATCGAAAAGGG-A 1080
|||| ||||||||||| ||||| | ||| |||||||||||||||| ||||| ||||| |
Sbjct 1018 TTGAAAAGGAAGGCTTAGAAGCCCTCAAGGCAGAACTCAAATCCTCTATCGAGAAGGGCA 1077
Query 1081 GTCAAGTTTGCCAACCAGTGA 1101
|||| ||||||||||| |||
Sbjct 1078 -TCAAATTTGCCAACCAATGA 1097
> AT5G09660.4 | Symbols: PMDH2 | peroxisomal NAD-malate dehydrogenase
2 | chr5:2993444-2995675 REVERSE LENGTH=1463
Length=1463
Score = 93.5 bits (50), Expect = 5e-18
Identities = 154/203 (76%), Gaps = 12/203 (6%)
Strand=Plus/Plus
Query 370 GATCTCGTTATTATTCCAGCTGGTGTACCAAGGAAGCCTGGTATGACCCGTGACGATCT- 428
||||| || || || ||||| ||| |||| ||||| || || |||||||| || |||||
Sbjct 458 GATCTTGTGATCATACCAGCCGGTATACCGAGGAAACCAGGGATGACCCGCGATGATCTG 517
Query 429 TTTCAACATTAACGCTGGAATTGTCAAGAAC-CT-T-TGCACTGCCATCGCCAAGTACTG 485
||| || || || ||||| ||||| || ||| || | || | | | || || | ||
Sbjct 518 TTT-AAAATCAATGCTGGGATTGTTAA-AACACTATGTG-A-AGGTGTAGCAAAATGTTG 573
Query 486 -CCCACATGC-ACTTATTAACATGATCAGCAACCCTGTGAACTCTACTGTTCCAATCGCA 543
|| | |||| | || | ||| |||||||||||||||||||||||||||| || || ||
Sbjct 574 TCCTA-ATGCTA-TTGTCAACTTGATCAGCAACCCTGTGAACTCTACTGTCCCCATTGCC 631
Query 544 GCTGAGATATTCAAGAAGGCTGG 566
|||||| | |||||||| |||||
Sbjct 632 GCTGAGGTTTTCAAGAAAGCTGG 654
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 70079960820
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5