BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg474450
Length=1225
Score E
Sequences producing significant alignments: (Bits) Value
AT1G53250.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 1604 0.0
> AT1G53250.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT1G53800.1);
Has 11909 Blast hits to 7704 proteins in 757 species: Archae
- 51; Bacteria - 1338; Metazoa - 4550; Fungi - 987; Plants
- 464; Viruses - 24; Other Eukaryotes - 4495 (source: NCBI
BLink). | chr1:19857351-19859256 FORWARD LENGTH=1333
Length=1333
Score = 1604 bits (868), Expect = 0.0
Identities = 1122/1239 (91%), Gaps = 40/1239 (3%)
Strand=Plus/Plus
Query 22 TTGTCTCCTGTTTGTCTTCGTGCCG-GTATGTCACTACATTTAGGTTTATCGATGGAGAT 80
|||||||||||| |||| ||||||| ||||||||||| ||||||||||||| ||||||||
Sbjct 90 TTGTCTCCTGTTCGTCTCCGTGCCGTGTATGTCACTAAATTTAGGTTTATCAATGGAGAT 149
Query 81 GAAATACCCATTTCAATCAATTCGGGCTCCAATCCGATGCGC------G-------A-T- 125
||||| | |||||||||||| ||| |||||| ||| |||||| | | |
Sbjct 150 GAAATGCACATTTCAATCAACTCGTGCTCCATTCCAATGCGCTTGGTGGTTCCCAAATTC 209
Query 126 --T-TATTGGAATCTCAAAGAACCCGTCATTTTGAGAGTATCTAATTCACTTGCTTCTTT 182
| ||||||| |||||||||||| || |||||||| || |||||||||||||||||||
Sbjct 210 AATCTATTGGACTCTCAAAGAACCAATCGTTTTGAGAATACCTAATTCACTTGCTTCTTT 269
Query 183 GAGTTGTATCAGACAATTGGAATTGAAATCTGTAGGTTCATTGTACAATGTGTTTGAGAC 242
||| | ||||||||| ||||| |||||||||||||||||||||||||||||||||||||
Sbjct 270 GAGGTCTATCAGACACTTGGAGTTGAAATCTGTAGGTTCATTGTACAATGTGTTTGAGAT 329
Query 243 TCATAACAAAGAAGTCAATTCAAGTGTTTTGGAAGTGAAGGCTATGAACAAAGATACTGA 302
||||| |||||||||||||||||| ||||||||||||| ||||||||||||||||||||
Sbjct 330 TCATAGGAAAGAAGTCAATTCAAGTCTTTTGGAAGTGAAAGCTATGAACAAAGATACTGA 389
Query 303 AGCTGATAGTGATAGTGATAGGAAGATCAAAGAAGAGGAAAGGAGAAGGAAGATTGGATT 362
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 390 AGCTGATAGTGATAGTGATAGGAAGATTAAAGAAGAGGAAAGGAGAAGGAAGATTGGATT 449
Query 363 AGCTAATAAAGGAAAGGTTCCATGGAACAAAGGAAGGAAACACAGTGAAGACACTCGAAG 422
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 450 AGCTAATAAAGGAAAGGTGCCATGGAACAAAGGAAGGAAACACAGTGAAGACACTCGAAG 509
Query 423 ACGCATCAAGCAGAGAACAATCGAAGCTTTGAGAAATCCCAAGGTTCGGAAGAAGATGTC 482
||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 510 ACGAATCAAGCAGAGAACAATCGAAGCTTTGACAAATCCCAAGGTTCGGAAGAAGATGTC 569
Query 483 TGAGCATCAACAACCACACAGTGATGAAACCAAGGAGAAGATACGAGCTTCAGTGAAACA 542
|| |||||||||||||||||| |||||||||||||||||||| ||||||||||||||||
Sbjct 570 CGATCATCAACAACCACACAGTAATGAAACCAAGGAGAAGATAAGAGCTTCAGTGAAACA 629
Query 543 AGTTTGGGCTGAACGGTCAAGGTCAAAGCGATTAAAGGAGAAGTTCACGTCATCGTGGTC 602
||||||||| ||||||||||| || |||||||||||||||||||||| ||||||||||||
Sbjct 630 AGTTTGGGCAGAACGGTCAAGATCGAAGCGATTAAAGGAGAAGTTCATGTCATCGTGGTC 689
Query 603 GGAAAACATTGCAGAAGCTGCTAGGAAAGGAGGAAGTGGCGAAGTAGAACTCGAGTGGGA 662
|||||||||||||||||||| |||||||||||||||||||| | |||||| || |||||
Sbjct 690 AGAAAACATTGCAGAAGCTGCAAGGAAAGGAGGAAGTGGCGAGGCAGAACTTGACTGGGA 749
Query 663 CAGCTATGAAAGAATAAAACAAGATTTTTCATCCGAGCAGCTTCAGTTAGCTGAAGAGAA 722
||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 750 CAGCTATGAAAAAATAAAACAAGATTTTTCATCTGAGCAGCTTCAGTTAGCTGAAGAGAA 809
Query 723 AGCAAGAGCAAAGGAACAAACCAAGATGATAGCaaaaaaaGCTGCACAAGCCAGGACCga 782
||||||||| ||||||||||||||||||||||||||| |||||||| |||||||||||||
Sbjct 810 AGCAAGAGCTAAGGAACAAACCAAGATGATAGCAAAAGAAGCTGCAAAAGCCAGGACCGA 869
Query 783 gaaaatgagga-aggttgcagaaagaaagaaagaacgtgaagagaaagaccgacgagaag 841
||| ||||||| || | ||||||| ||||||||||||||| |||||||||||||||||||
Sbjct 870 GAAGATGAGGAGAGCT-GCAGAAAAAAAGAAAGAACGTGAGGAGAAAGACCGACGAGAAG 928
Query 842 gaaagattcgaaagccaaatcagaaaagGGAGAATCCAACCATTGTTTCACGCTCTAAAC 901
||||||||||||||||||| ||| ||||||||||||||||||||| |||||| |||||||
Sbjct 929 GAAAGATTCGAAAGCCAAAGCAGGAAAGGGAGAATCCAACCATTGCTTCACGTTCTAAAC 988
Query 902 TGAAGAAGAGACTAACAAAGATTCACAAGAAGAAAACAAGTCTTGGCAAAATCGCTATTG 961
| |||||||||||||||||||||||||||||||||||||||||||| || ||||| ||||
Sbjct 989 TAAAGAAGAGACTAACAAAGATTCACAAGAAGAAAACAAGTCTTGGTAAGATCGCAATTG 1048
Query 962 GAAAGGATAGAGTAGTTTCAGTTGCAGCTAAACTGGAGAAACTGGATCTGGAACTGATAA 1021
||| |||||| || ||||||||||||||||||||||||||||||||| |||| ||||||
Sbjct 1049 GAACGGATAGGGTTGTTTCAGTTGCAGCTAAACTGGAGAAACTGGATTTGGATTTGATAA 1108
Query 1022 GGAAAGAGAGGACAAGAGGAGATATCTCACTTGCTGATCAGATTCAAGCTGCCAAGAACC 1081
|||||||| | |||||||||||||||||||||||||||||||| |||||||| |||||||
Sbjct 1109 GGAAAGAGCGAACAAGAGGAGATATCTCACTTGCTGATCAGATCCAAGCTGCTAAGAACC 1168
Query 1082 AACGAGGAAATGATGTATTATCGAGATTTGGTCTTTTTGCCATGAAATCAATGGATTTTG 1141
||||||||| |||||| |||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1169 AACGAGGAAGTGATGTTTTATCGAGATTTGGTCTTTTTGCCATGAAATCGATGGATTTTG 1228
Query 1142 ATTAACTCTTTT--AG-C-T-GTCT----CTTTA-CTT-----CTTGTGCCACTAAATAC 1186
|||||||||||| | | | || | |||| ||| ||||||||||||||||
Sbjct 1229 ATTAACTCTTTTCTACTCCTAGTTTATAGCTTTCTCTTTTTTTCTTGTGCCACTAAATA- 1287
Query 1187 TGAAATAAACAAGATTGACTTGAGGATATAATAAATAAA 1225
|| |||||||| |||||||||||||||||||||||||
Sbjct 1288 --AA-TAAACAAGGTTGACTTGAGGATATAATAAATAAA 1323
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60190453455
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5