BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg474450 Length=1225 Score E Sequences producing significant alignments: (Bits) Value AT1G53250.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 1604 0.0 > AT1G53250.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G53800.1); Has 11909 Blast hits to 7704 proteins in 757 species: Archae - 51; Bacteria - 1338; Metazoa - 4550; Fungi - 987; Plants - 464; Viruses - 24; Other Eukaryotes - 4495 (source: NCBI BLink). | chr1:19857351-19859256 FORWARD LENGTH=1333 Length=1333 Score = 1604 bits (868), Expect = 0.0 Identities = 1122/1239 (91%), Gaps = 40/1239 (3%) Strand=Plus/Plus Query 22 TTGTCTCCTGTTTGTCTTCGTGCCG-GTATGTCACTACATTTAGGTTTATCGATGGAGAT 80 |||||||||||| |||| ||||||| ||||||||||| ||||||||||||| |||||||| Sbjct 90 TTGTCTCCTGTTCGTCTCCGTGCCGTGTATGTCACTAAATTTAGGTTTATCAATGGAGAT 149 Query 81 GAAATACCCATTTCAATCAATTCGGGCTCCAATCCGATGCGC------G-------A-T- 125 ||||| | |||||||||||| ||| |||||| ||| |||||| | | | Sbjct 150 GAAATGCACATTTCAATCAACTCGTGCTCCATTCCAATGCGCTTGGTGGTTCCCAAATTC 209 Query 126 --T-TATTGGAATCTCAAAGAACCCGTCATTTTGAGAGTATCTAATTCACTTGCTTCTTT 182 | ||||||| |||||||||||| || |||||||| || ||||||||||||||||||| Sbjct 210 AATCTATTGGACTCTCAAAGAACCAATCGTTTTGAGAATACCTAATTCACTTGCTTCTTT 269 Query 183 GAGTTGTATCAGACAATTGGAATTGAAATCTGTAGGTTCATTGTACAATGTGTTTGAGAC 242 ||| | ||||||||| ||||| ||||||||||||||||||||||||||||||||||||| Sbjct 270 GAGGTCTATCAGACACTTGGAGTTGAAATCTGTAGGTTCATTGTACAATGTGTTTGAGAT 329 Query 243 TCATAACAAAGAAGTCAATTCAAGTGTTTTGGAAGTGAAGGCTATGAACAAAGATACTGA 302 ||||| |||||||||||||||||| ||||||||||||| |||||||||||||||||||| Sbjct 330 TCATAGGAAAGAAGTCAATTCAAGTCTTTTGGAAGTGAAAGCTATGAACAAAGATACTGA 389 Query 303 AGCTGATAGTGATAGTGATAGGAAGATCAAAGAAGAGGAAAGGAGAAGGAAGATTGGATT 362 ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 390 AGCTGATAGTGATAGTGATAGGAAGATTAAAGAAGAGGAAAGGAGAAGGAAGATTGGATT 449 Query 363 AGCTAATAAAGGAAAGGTTCCATGGAACAAAGGAAGGAAACACAGTGAAGACACTCGAAG 422 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 450 AGCTAATAAAGGAAAGGTGCCATGGAACAAAGGAAGGAAACACAGTGAAGACACTCGAAG 509 Query 423 ACGCATCAAGCAGAGAACAATCGAAGCTTTGAGAAATCCCAAGGTTCGGAAGAAGATGTC 482 ||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 510 ACGAATCAAGCAGAGAACAATCGAAGCTTTGACAAATCCCAAGGTTCGGAAGAAGATGTC 569 Query 483 TGAGCATCAACAACCACACAGTGATGAAACCAAGGAGAAGATACGAGCTTCAGTGAAACA 542 || |||||||||||||||||| |||||||||||||||||||| |||||||||||||||| Sbjct 570 CGATCATCAACAACCACACAGTAATGAAACCAAGGAGAAGATAAGAGCTTCAGTGAAACA 629 Query 543 AGTTTGGGCTGAACGGTCAAGGTCAAAGCGATTAAAGGAGAAGTTCACGTCATCGTGGTC 602 ||||||||| ||||||||||| || |||||||||||||||||||||| |||||||||||| Sbjct 630 AGTTTGGGCAGAACGGTCAAGATCGAAGCGATTAAAGGAGAAGTTCATGTCATCGTGGTC 689 Query 603 GGAAAACATTGCAGAAGCTGCTAGGAAAGGAGGAAGTGGCGAAGTAGAACTCGAGTGGGA 662 |||||||||||||||||||| |||||||||||||||||||| | |||||| || ||||| Sbjct 690 AGAAAACATTGCAGAAGCTGCAAGGAAAGGAGGAAGTGGCGAGGCAGAACTTGACTGGGA 749 Query 663 CAGCTATGAAAGAATAAAACAAGATTTTTCATCCGAGCAGCTTCAGTTAGCTGAAGAGAA 722 ||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 750 CAGCTATGAAAAAATAAAACAAGATTTTTCATCTGAGCAGCTTCAGTTAGCTGAAGAGAA 809 Query 723 AGCAAGAGCAAAGGAACAAACCAAGATGATAGCaaaaaaaGCTGCACAAGCCAGGACCga 782 ||||||||| ||||||||||||||||||||||||||| |||||||| ||||||||||||| Sbjct 810 AGCAAGAGCTAAGGAACAAACCAAGATGATAGCAAAAGAAGCTGCAAAAGCCAGGACCGA 869 Query 783 gaaaatgagga-aggttgcagaaagaaagaaagaacgtgaagagaaagaccgacgagaag 841 ||| ||||||| || | ||||||| ||||||||||||||| ||||||||||||||||||| Sbjct 870 GAAGATGAGGAGAGCT-GCAGAAAAAAAGAAAGAACGTGAGGAGAAAGACCGACGAGAAG 928 Query 842 gaaagattcgaaagccaaatcagaaaagGGAGAATCCAACCATTGTTTCACGCTCTAAAC 901 ||||||||||||||||||| ||| ||||||||||||||||||||| |||||| ||||||| Sbjct 929 GAAAGATTCGAAAGCCAAAGCAGGAAAGGGAGAATCCAACCATTGCTTCACGTTCTAAAC 988 Query 902 TGAAGAAGAGACTAACAAAGATTCACAAGAAGAAAACAAGTCTTGGCAAAATCGCTATTG 961 | |||||||||||||||||||||||||||||||||||||||||||| || ||||| |||| Sbjct 989 TAAAGAAGAGACTAACAAAGATTCACAAGAAGAAAACAAGTCTTGGTAAGATCGCAATTG 1048 Query 962 GAAAGGATAGAGTAGTTTCAGTTGCAGCTAAACTGGAGAAACTGGATCTGGAACTGATAA 1021 ||| |||||| || ||||||||||||||||||||||||||||||||| |||| |||||| Sbjct 1049 GAACGGATAGGGTTGTTTCAGTTGCAGCTAAACTGGAGAAACTGGATTTGGATTTGATAA 1108 Query 1022 GGAAAGAGAGGACAAGAGGAGATATCTCACTTGCTGATCAGATTCAAGCTGCCAAGAACC 1081 |||||||| | |||||||||||||||||||||||||||||||| |||||||| ||||||| Sbjct 1109 GGAAAGAGCGAACAAGAGGAGATATCTCACTTGCTGATCAGATCCAAGCTGCTAAGAACC 1168 Query 1082 AACGAGGAAATGATGTATTATCGAGATTTGGTCTTTTTGCCATGAAATCAATGGATTTTG 1141 ||||||||| |||||| |||||||||||||||||||||||||||||||| |||||||||| Sbjct 1169 AACGAGGAAGTGATGTTTTATCGAGATTTGGTCTTTTTGCCATGAAATCGATGGATTTTG 1228 Query 1142 ATTAACTCTTTT--AG-C-T-GTCT----CTTTA-CTT-----CTTGTGCCACTAAATAC 1186 |||||||||||| | | | || | |||| ||| |||||||||||||||| Sbjct 1229 ATTAACTCTTTTCTACTCCTAGTTTATAGCTTTCTCTTTTTTTCTTGTGCCACTAAATA- 1287 Query 1187 TGAAATAAACAAGATTGACTTGAGGATATAATAAATAAA 1225 || |||||||| ||||||||||||||||||||||||| Sbjct 1288 --AA-TAAACAAGGTTGACTTGAGGATATAATAAATAAA 1323 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 60190453455 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5