BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg474453
Length=1773
Score E
Sequences producing significant alignments: (Bits) Value
AT1G53270.1 | Symbols: | ABC-2 type transporter family protein... 2843 0.0
> AT1G53270.1 | Symbols: | ABC-2 type transporter family protein
| chr1:19862878-19864650 FORWARD LENGTH=1773
Length=1773
Score = 2843 bits (1539), Expect = 0.0
Identities = 1699/1777 (96%), Gaps = 8/1777 (0%)
Strand=Plus/Plus
Query 1 ATGGAATTACCGGTGAAAGCTCCTATTCCCGGTGGCC-GGAAATTCTCATATAGATTAGA 59
|||||||| ||||| |||||||||||||||||||||| ||||| ||||||||||||||||
Sbjct 1 ATGGAATTGCCGGTAAAAGCTCCTATTCCCGGTGGCCGGGAAA-TCTCATATAGATTAGA 59
Query 60 AACCAAGAATCTGTCATATAGATTAGGCGGAAACGCTCCAAAATTTTCTAATTTATGTGG 119
||||||||||||||| |||||| ||||||||||| ||||||| |||||||||||||||||
Sbjct 60 AACCAAGAATCTGTCGTATAGAATAGGCGGAAACACTCCAAAGTTTTCTAATTTATGTGG 119
Query 120 GTTGTTGAGTGAGAAGGAAGAAAAGGTTATCTTAAAAGATGTTTCTTGTGATGCAAGATC 179
||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||
Sbjct 120 TTTGTTGAGTGAGAAGGAGGAAAAGGTTATCTTAAAGGATGTTTCTTGTGATGCAAGATC 179
Query 180 CGCGGAGATCACGGCGATTGCGGGTCCGAGTGGGGCAGGGAAAACCACTTTGCTGGAGAT 239
|||||||||||| ||||| |||||||| || || |||||||||||||| |||||||||||
Sbjct 180 CGCGGAGATCACTGCGATCGCGGGTCCAAGCGGAGCAGGGAAAACCACGTTGCTGGAGAT 239
Query 240 TCTCGCCGGAAAAGTTTCTCATGGGAAAGTTTCAGGGCAAGTGCTTGTCAATGGTAGGCC 299
||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 240 TCTAGCCGGAAAAGTTTCTCATGGGAAAGTTTCAGGGCAAGTGCTTGTCAACGGTAGGCC 299
Query 300 TATGGATGGTCCTGAGTACAGGAGGGTTTCAGGGTTTGTGCCACAAGAGGATGCTCTGTT 359
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 300 TATGGATGGTCCTGAGTACAGGAGGGTTTCAGGGTTTGTGCCACAAGAAGATGCTCTGTT 359
Query 360 TCCGTTTCTTACGGTGCAAGAAACACTGACGTACAGCGCACTCCTT-AGGCTGAAGACGA 418
|||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||| |
Sbjct 360 TCCGTTTCTTACGGTGCAAGAAACACTGACGTACAGCGCACT-CTTGAGGCTGAAGACAA 418
Query 419 AGAGGAAAGATGCGGTC-ACGAAGGTGAAGAGGCTGATTCAAGAGCTCGGTCTAGAACAT 477
|||||||||| |||| | | |||||||||||||||||||||||||| ||||||||||||
Sbjct 419 AGAGGAAAGACGCGG-CTGCAAAGGTGAAGAGGCTGATTCAAGAGCTTGGTCTAGAACAT 477
Query 478 GTTGTGGATTCAAGGATCGGTCAAGGATCAAGATCTGGAATCTCTGGAGGAGAAAGAAGA 537
|||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 478 GTTGCGGATTCAAGGATCGGTCAAGGATCAAGATCTGGAATCTCTGGAGGAGAGAGAAGA 537
Query 538 AGGGTTTCTATTGGAGTTGAACTTGTTCATGATCCAAATGTTATATTGATCGATGAGCCA 597
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 538 AGGGTTTCTATTGGAGTTGAACTTGTTCATGATCCAAATGTTATATTGATCGATGAGCCA 597
Query 598 ACCTCTGGTTTGGATTCAGCATCCGCTCTTCAAGTTGTGATGCTTCTCAAAGATATGACG 657
||||||||||||||||| || ||||||||||||||||||| |||||||||||||||||||
Sbjct 598 ACCTCTGGTTTGGATTCTGCGTCCGCTCTTCAAGTTGTGACGCTTCTCAAAGATATGACG 657
Query 658 GTTAAACAAAGTAAAACCATTGTTCTGACGATTCACCAGCCTGGGTTTCGCATACTCGAG 717
|||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 658 ATTAAACAAGGTAAAACCATTGTTCTGACGATTCACCAGCCTGGTTTTCGCATACTCGAG 717
Query 718 CTGATAGACCGGATAGTGTTGCTCTCTAATGGGCTGGTTGTTCAAAACGGGTCGGTTAAT 777
| ||||||||||||||||||||||||||| ||| |||||||||||||||| || ||| ||
Sbjct 718 CAGATAGACCGGATAGTGTTGCTCTCTAACGGGATGGTTGTTCAAAACGGATCAGTTTAT 777
Query 778 AGCCTTCATCAGAAGATTAAGTTTTCCGGTCACCAGATTCCTCGGCGGGTAAATGTCTTG 837
||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||
Sbjct 778 AGCCTTCATCAGAAGATTAAGTTCTCCGGTCACCAGATTCCTAGGCGGGTAAATGTCTTG 837
Query 838 GAGTATGCAATTGATATTGCAGGGAGTCTTGAACCGATAAGAACCCAGAGTTGCAGAGAA 897
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 838 GAGTATGCAATTGATATTGCAGGGAGTCTTGAACCGATCAGAACCCAGAGTTGCAGAGAA 897
Query 898 ATCTCATGTTATGGTCATAGCAAAACATGGAAGAGTTGCTATATTAATGCAGGAGGAGAG 957
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 898 ATCTCATGTTATGGTCATAGCAAAACATGGAAGAGTTGCTATATTAGTGCAGGAGGAGAG 957
Query 958 CTTCATCAATCTGATTCTCACAGCAACTCAGTGTTAGAGGAAGTGCAGATACTTGGGCAA 1017
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 958 CTTCATCAATCTGATTCTCACAGCAACTCAGTGTTAGAGGAAGTGCAGATACTCGGGCAA 1017
Query 1018 AGATCTTGTAAGAACATCTTCAGAACCAAGCAATTGTTCGCAACCAGAGCTTTACAAGCT 1077
|||||||| |||||||||||||||||||||||||||||| |||||||||| |||||||||
Sbjct 1018 AGATCTTGCAAGAACATCTTCAGAACCAAGCAATTGTTCACAACCAGAGCCTTACAAGCT 1077
Query 1078 TCCATTGCCGGTCTTATACTCGGGTCAATTTACTTGAACGTAGGAAATCAAAAGAAAGAA 1137
|||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct 1078 TCCATTGCCGGTCTTATACTGGGGTCGATTTACTTGAACGTAGGAAATCAAAAGAAAGAA 1137
Query 1138 GCGAAAGTCTTGCGAACTGGGTTCTTCGCCTTTACCCTCACTTTCCTACTATCTTCCACA 1197
||||||||||||||||| |||||||||||||||| |||||||||||| ||||||||||||
Sbjct 1138 GCGAAAGTCTTGCGAACCGGGTTCTTCGCCTTTATCCTCACTTTCCTGCTATCTTCCACA 1197
Query 1198 ACAGAGGGACTTCCAATATTCTTGCAAGACCGGAGAATTCTAATGAGAGAGACATCGAGA 1257
||||||||||||||||| |||||||||||| ||||||| |||||||||||||||||||||
Sbjct 1198 ACAGAGGGACTTCCAATTTTCTTGCAAGACAGGAGAATCCTAATGAGAGAGACATCGAGA 1257
Query 1258 AGGGCTTACAGAGTTTTGTCTTACGTTTTAGCAGATACCCTCATCTTCATTCCCTTCCTA 1317
|||||||||||||||||||||||||||||||||||||| ||||| |||||||||||| |
Sbjct 1258 AGGGCTTACAGAGTTTTGTCTTACGTTTTAGCAGATACTCTCATATTCATTCCCTTCTTG 1317
Query 1318 TTGATCATAAGCATGCTCTTTGCTACGCCGGTTTATTGGCTGGTCGGTCTCAGAAGAGAG 1377
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1318 TTGATCATAAGCATGCTCTTTGCTACGCCGGTTTATTGGCTGGTCGGTCTCAGAAGAGAG 1377
Query 1378 CTAGACGGCTTCCTCTACTTCTCATTGGTGATATGGATTGTTCTTCTGATGTCAAACTCC 1437
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1378 CTAGACGGCTTCCTCTACTTCTCATTGGTGATATGGATTGTTCTTCTGATGTCAAACTCT 1437
Query 1438 TTTGTTGCATGTTTCAGTGCTCTTGTTCCAAACTTCATAATGGGGACATCAGTGATCTCA 1497
||||| |||||||||||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct 1438 TTTGTCGCATGTTTCAGTGCTCTTGTCCCAAACTTCATAATGGGGACATCAGTAATCTCA 1497
Query 1498 GGTCTTATGGGATCCTTT-TTCCTCTTCTCTGGATATTTCATCGCAAAGGAGAGGATCCC 1556
||||| |||||||| ||| ||||||||||| || |||||||| |||||||| ||||||||
Sbjct 1498 GGTCTCATGGGATC-TTTCTTCCTCTTCTCCGGGTATTTCATTGCAAAGGACAGGATCCC 1556
Query 1557 CGTTTACTGGGAGTTCATGCATTATCTCAGCCTCTTCAAGTATCCATTCGAATGCCTTAT 1616
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1557 CGTTTACTGGGAGTTCATGCATTATCTCAGCCTCTTCAAGTATCCATTCGAATGCCTGAT 1616
Query 1617 GATCAACGAGTATCGAGGAGACGTGTTCTTAAAGCAACAAGACCTTAAGGAGTCTCAGAA 1676
||||||||||||||||||||||||||||||||| ||||||||||| || |||||||||||
Sbjct 1617 GATCAACGAGTATCGAGGAGACGTGTTCTTAAAACAACAAGACCTCAAAGAGTCTCAGAA 1676
Query 1677 ATGGAGCAATCTTGGTATCATGGCAAGTTTCATCGTCGGGTACAGAGTCCTTGGATTCTT 1736
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1677 ATGGAGCAATCTTGGTATCATGGCAAGTTTCATCGTCGGGTACAGAGTCCTTGGATTCTT 1736
Query 1737 CATCTTATGGTACAGATGTTACAGAACAAGAAGCTAG 1773
|||||||||||||||||||||||||||||||||||||
Sbjct 1737 CATCTTATGGTACAGATGTTACAGAACAAGAAGCTAG 1773
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 87700352115
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5