BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg474455
Length=1176
Score E
Sequences producing significant alignments: (Bits) Value
AT1G53290.1 | Symbols: | Galactosyltransferase family protein ... 1820 0.0
AT3G14960.1 | Symbols: | Galactosyltransferase family protein ... 917 0.0
> AT1G53290.1 | Symbols: | Galactosyltransferase family protein
| chr1:19871299-19873490 FORWARD LENGTH=1331
Length=1331
Score = 1820 bits (985), Expect = 0.0
Identities = 1118/1179 (95%), Gaps = 22/1179 (2%)
Strand=Plus/Plus
Query 1 AAAAACAAACCCGTGACGCCATTAACGAAGGTCAAGCTTGCTTGACACCACACAATGCAT 60
||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||
Sbjct 1 AAAAACAAACCCGTGACGCCATTAACGAAGGTCGAGCTTCCTTGACACCACACAATGCAT 60
Query 61 TCTCCTCGTAAGTTATTCCACGCGCGGTCATCACTCGCCACGCGCCGATCAACGGCTCTT 120
|||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 TCTCCTCGTAAGCTATTTCACGCGCGGTCATCACTCGCCACGCGCCGATCAACGGCTCTT 120
Query 121 GTCGTATTAACTTCCTTAGCTATCGGAATCGCCGGTTTCACATTTGGACTCGCCGTGATT 180
||||||||||||||| ||||||| |||||||||||||||||||||||||||||||| |||
Sbjct 121 GTCGTATTAACTTCCCTAGCTATTGGAATCGCCGGTTTCACATTTGGACTCGCCGTAATT 180
Query 181 CTTTTACCGGGTCTCCGATTAACCGGTCGTAATTGCTTGACGAACACTCCTCCGAAGACG 240
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 CTTATACCGGGTCTCCGATTAACCGGTCGTAATTGCTTGACGAACACTCCTCCGAAGACG 240
Query 241 GTGCGAGTCGTTTGGGACGTCGCCGGAAATAGTAATGGCGTTGTTGGTGGCGAAA-GTAA 299
||||||||||||||||||||||||||||||||||||||||||||| ||||||||| | ||
Sbjct 241 GTGCGAGTCGTTTGGGACGTCGCCGGAAATAGTAATGGCGTTGTTAGTGGCGAAAAG-AA 299
Query 300 GAGGCATAAGGTTATGGGATTCGTTGGTATTCAAACCGGATTTGGATCTGCTGGCCGGAG 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 GAGGCATAAGGTTATGGGATTCGTTGGTATTCAAACCGGATTTGGATCTGCTGGCCGGAG 359
Query 360 ACGATCACTTAGGAAGACATGGATGCCGTCAGATCCAGATGGTCTTCGACGTTTGGAAGA 419
|||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 360 ACGATCACTTAGAAAGACATGGATGCCGTCAGATCCAGAAGGTCTTCGACGTTTGGAAGA 419
Query 420 ATCTACGGGATTAGCCATTAGGTTTATGATAGGGAAAACCAAAAACGAGGCGAAAATGGC 479
||||||||| |||||||| |||||||||||||| ||||| |||| |||| |||||||||
Sbjct 420 ATCTACGGGGTTAGCCATCAGGTTTATGATAGGAAAAACGAAAAGTGAGGAGAAAATGGC 479
Query 480 TGAGCTTAGAAGGGAAATCGCAGAGTATGATGACTTTGTTCAGCTAGATATCGAAGAGGA 539
| |||| ||||| ||||||||||||||||||||||| || | ||||||||||||||||||
Sbjct 480 TCAGCTCAGAAGAGAAATCGCAGAGTATGATGACTTCGTACTGCTAGATATCGAAGAGGA 539
Query 540 GTACAGTAAGCTCCCTTACAAAACTTTGGCTTTCTTCAAAGCTGCATATGCGCTTTATGA 599
|||||||||||| |||||||||||||||||||||||||||||||| || |||||||||||
Sbjct 540 GTACAGTAAGCTTCCTTACAAAACTTTGGCTTTCTTCAAAGCTGCGTACGCGCTTTATGA 599
Query 600 TTCTGAATTCTATGTCAAAGCTGATGATGATATATACTTGAGGCCAGATCGACTCTCTCT 659
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 600 TTCTGAGTTCTATGTCAAAGCTGATGATGATATATACTTGAGGCCAGATCGACTCTCTCT 659
Query 660 ACTATTGGCAAAAGAGCGGAGTCACTCTCAAACGTACCTAGGATGCTTGAAAAAGGGTCC 719
|||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 660 GCTATTGGCGAAAGAGCGGAGTCACTCTCAGACGTACCTAGGATGCTTGAAAAAGGGTCC 719
Query 720 GGTTTTCACAGATCCTAAGCTTAAATGGTATGAACCATTGTCTCATCTGCTGGGAAAAGA 779
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 720 GGTTTTCACAGATCCTAAGCTCAAATGGTATGAACCATTGTCTCATCTGCTGGGAAAAGA 779
Query 780 GTACTTTCTTCATGCTTATGGTCCGATTTATGCTCTCTCTGCTGATGTGGTAGCAAGTTT 839
||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||
Sbjct 780 GTACTTTCTTCATGCTTATGGCCCGATTTATGCTCTCTCTGCTGATGTGGTAGCCAGTTT 839
Query 840 GGTTGCCCTCAAGAATAATAGGCATGTTATGTTTTTCAGGATGTTTAACAACGAGGACGT 899
|||||||||||||||||| || ||| | ||||||||||||||||||||||||
Sbjct 840 GGTTGCCCTCAAGAATAA----CA-GTT-T------CAGGATGTTTAACAACGAGGACGT 887
Query 900 AACAATAGGTGCGTGGATGCTGGCAATGAATGTCAACCACGAGAACCATCACATCCTTTG 959
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 888 AACAATAGGTGCGTGGATGCTGGCAATGAATGTCAACCACGAGAACCATCACATCCTTTG 947
Query 960 CGAACCAGAATGCTCGCCTTCCTCTGTTGCTGTTTGGGACATCCCTAAATGCTCAGGTCT 1019
||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 948 CGAACCAGAATGCTCACCTTCTTCTGTTGCTGTTTGGGACATCCCTAAATGCTCAGGTCT 1007
Query 1020 TTGTAACCCAGAGAAAAGGATGTTGGAACTTCACAAGCAAGAAAGCTGCTCGAAAAGCCC 1079
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1008 TTGTAACCCAGAGAAAAGGATGTTGGAACTTCACAAGCAAGAAAGCTGCTCGAAAAGCCC 1067
Query 1080 GACTTTGCCATCAGATGATGAATGATAGATATTATTTCTCTTATTGAATGTTCTT-ATAA 1138
|||||||||||||||||||||||||| | | ||||||||||| ||||| ||| ||||
Sbjct 1068 AACTTTGCCATCAGATGATGAATGATA--T-T-ATTTCTCTTATCAAATGT-CTTTATAA 1122
Query 1139 ACCTCTTCTC-GCTGGTCGAAGCTCTATCACTTGCAGAT 1176
|||||||||| | ||||||||||||||||||||||||||
Sbjct 1123 ACCTCTTCTCAG-TGGTCGAAGCTCTATCACTTGCAGAT 1160
> AT3G14960.1 | Symbols: | Galactosyltransferase family protein
| chr3:5035896-5038007 REVERSE LENGTH=1444
Length=1444
Score = 917 bits (496), Expect = 0.0
Identities = 863/1037 (83%), Gaps = 38/1037 (4%)
Strand=Plus/Plus
Query 79 CACGCGCGGT-CATCACTCGCCACGCGCCGATCAACGGCTCTTG-TCGTATTAACTTCCT 136
||||||| || ||||| || |||||||||||| ||| || ||| |||| || || | ||
Sbjct 81 CACGCGC-GTCCATCATTCTTCACGCGCCGATCGACGCCT-TTGATCGTCTTCACCT-CT 137
Query 137 -TAGCTATCGGAATCGCCGGTTTCACATTT-GGACTCGCCGTGATTCTTTTACCGGGTCT 194
| |||||||| | |||||||| | ||| ||| | | ||| ||||| || |||||
Sbjct 138 CTCGCTATCGGTCTAACCGGTTTC-CTTTTCGGATTATCAACGATCCTTTTCCCTGGTCT 196
Query 195 CCGATTAACCGGTC-GTAATTGCTTGACGAACACT-CCTCCGAAGACGGTGCGAGTCGTT 252
||| ||| | || | || ||| | || ||| | || |||||||| || | ||||
Sbjct 197 CCGGTTATCTGGCCGGT-CCTGCCTCACCAAC-TTGCCACCGAAGACTGTTAAAATCGTC 254
Query 253 TGGGACGTCGCCGGAAATAGTAATGGCGTTGTTGGTGGCGAAAGT-AAGAGGCATAAGGT 311
||||||||||| || |||||| || | ||| ||||| |||| |||||||| || ||
Sbjct 255 TGGGACGTCGCTGGTAATAGT-AT--C---GTTAATGGCG-AAGTCAAGAGGCACAAAGT 307
Query 312 TATGGGATTCGTTGGTATTCAAACCGGATTTGGATCTGCTGGCCGGAGACGATCACTTAG 371
||||||||||| || || || |||||||| |||||||||||||||||||| | || ||
Sbjct 308 GATGGGATTCGTCGGAATCCAGACCGGATTCAGATCTGCTGGCCGGAGACGAGCTCTCAG 367
Query 372 GAAGACATGGATGCCGTCAGATCCAGATGGTCTTCGACGTTTGGAAGAATCTACGGGATT 431
||| |||||||||||||| ||||| || || |||||| | ||||||||||| || |||||
Sbjct 368 GAACACATGGATGCCGTCCGATCCCGAAGGCCTTCGAAGATTGGAAGAATCAACAGGATT 427
Query 432 AGCCATTAGGTTTATGATAGGGAAAACCAAAAACGAGGCGAAAATGGCTGAGCTTAGAAG 491
||||||||| ||||| ||||| ||||||||| ||||||| ||||||| |||||| |||||
Sbjct 428 AGCCATTAGATTTATTATAGGCAAAACCAAAGACGAGGCCAAAATGGTTGAGCTGAGAAG 487
Query 492 GGAAATCGCAGA-GTATGATGACTTTGTTCAGCTAGATATCGAAGAGGAGTACAGTAAGC 550
||| | ||| | ||| ||||||||| | | ||| |||||||| ||||||||||||||||
Sbjct 488 CGAAGTTGCA-ATGTACGATGACTTTATACTGCTCGATATCGAGGAGGAGTACAGTAAGC 546
Query 551 TCCCTTACAAAACTTTGGCTTTCTTCAAAGCTGCATATGCGCTTTATGATTCTGAATTCT 610
|||| ||||||||||||||||||||||||||||||||||| || |||||||| |||||||
Sbjct 547 TCCCCTACAAAACTTTGGCTTTCTTCAAAGCTGCATATGCACTATATGATTCAGAATTCT 606
Query 611 ATGTCAAAGCTGATGATGATATATACTTGAGGCCAGATCGACTCTCTCTACTATTGGCAA 670
|||||||||||||||||||||||||||||||||||||||| | ||| |||| ||||| |
Sbjct 607 ATGTCAAAGCTGATGATGATATATACTTGAGGCCAGATCGTTTGTCTTTACTGTTGGCTA 666
Query 671 AAGAGCGGAGTCACTCTCAAACGTACCTAGGATGCTTGAAAAAGGGTCCGGTTTTCACAG 730
|||||||| ||||||| || || ||||| |||||| ||||||| ||||||||||||||||
Sbjct 667 AAGAGCGGGGTCACTCGCAGACATACCTTGGATGCATGAAAAAAGGTCCGGTTTTCACAG 726
Query 731 ATCCTAAGCTTAAATGGTATGAACCATTGTCTCATCTGCT-GGGAAAAGAGTACTTTCTT 789
|||| |||||||||||||||||||| ||| | ||||||| |||||| ||||||||||||
Sbjct 727 ATCCAAAGCTTAAATGGTATGAACCTTTGGCAGATCTGCTCGGGAAA-GAGTACTTTCTT 785
Query 790 CATGCTTATGGTCCGATTTATGCTCTCTCTGCTGATGTGGT-AGCAAGTTTGGTTGCCCT 848
||||||||||| || || |||||||| ||||||||||| || | | ||||||||||||||
Sbjct 786 CATGCTTATGGCCCCATATATGCTCTTTCTGCTGATGTTGTCA-CTAGTTTGGTTGCCCT 844
Query 849 CAAGAATAATAGGCATGTTATGTTTTTCAGGATGTTTAACAACGAGGACGTAACAATAGG 908
|||||| || || ||| | ||||||||||| ||| |||||||| || |||||
Sbjct 845 CAAGAACAA----CA-GTT-T------CAGGATGTTTAGCAATGAGGACGTGACCATAGG 892
Query 909 TGCGTGGATGCTGGCAATGAATGTCAACCACGAGAACCATCACATCCTTTGCGAACCAGA 968
||||||||||||||||||||| || ||||||||||||| ||||| |||||| ||||||||
Sbjct 893 TGCGTGGATGCTGGCAATGAACGTTAACCACGAGAACCTTCACACCCTTTGTGAACCAGA 952
Query 969 ATGCTCGCCTTCCTCTGTTGCTGTTTGGGACATCCCTAAATGCTCAGGTCTTTGTAACCC 1028
||||| || | ||| ||||||||||||| || || ||||||||||| || ||||||||
Sbjct 953 GTGCTCACCATACTCCATTGCTGTTTGGGATATACCAAAATGCTCAGGCCTCTGTAACCC 1012
Query 1029 AGAGAAAAGGATGTTGGAACTTCACAAGCAAGAAAGCTGCTCGAAAAGCCCGACTTTGCC 1088
|||||||||||||||||||||||||| || ||| |||||||| |||||||||||||||||
Sbjct 1013 AGAGAAAAGGATGTTGGAACTTCACATGCTAGAGAGCTGCTCAAAAAGCCCGACTTTGCC 1072
Query 1089 ATCAGATGATGAATGAT 1105
||| |||||||| ||||
Sbjct 1073 ATCGGATGATGAGTGAT 1089
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57730626750
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5