BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg474468
Length=1862
Score E
Sequences producing significant alignments: (Bits) Value
AT1G53380.1 | Symbols: | Plant protein of unknown function (DU... 2852 0.0
> AT1G53380.1 | Symbols: | Plant protein of unknown function (DUF641)
| chr1:19913076-19916517 REVERSE LENGTH=1882
Length=1882
Score = 2852 bits (1544), Expect = 0.0
Identities = 1779/1888 (94%), Gaps = 33/1888 (2%)
Strand=Plus/Plus
Query 1 GTttctcatctccagctctcattttctctctcatcttcaacctcttaactctc--ttctc 58
|||||||||||||||||||||||||||||||||||||||| | |||||||||| |||||
Sbjct 1 GTTTCTCATCTCCAGCTCTCATTTTCTCTCTCATCTTCAA-C-CTTAACTCTCTTTTCTC 58
Query 59 tctactctttctttGGACGAATCTG--TA--------AACATTGAAAGGAAGGTAAAGAA 108
||||||||||||||||||||||||| || || || |||||||||||||||
Sbjct 59 TCTACTCTTTCTTTGGACGAATCTGTCTATTGTTTGTAAGTTTTCAAGGAAGGTAAAGAA 118
Query 109 ACAGAGAGATCTAACTTAGTCTGCAGGGTTTAAGCAGAGGTTGG-TT-T--A----TCAA 160
||||||||||||||||| |||||||||||||||||||||||||| || | | || |
Sbjct 119 ACAGAGAGATCTAACTTCGTCTGCAGGGTTTAAGCAGAGGTTGGTTTGTGGATTCTTCGA 178
Query 161 TTTCTTTCTTCAGATTTACTCTACAATGAAGTGAGAATTTCAAAAAATTAACAAAGAAAA 220
|||| ||||||||||||| |||||||||||||||||||||| ||| || ||||||| |||
Sbjct 179 TTTC-TTCTTCAGATTTAGTCTACAATGAAGTGAGAATTTCTAAAGATAAACAAAG-AAA 236
Query 221 AACTTGGGACTTTAGCAAGATGGAGACTGTGAGACCAATGGTTGTTGCTCCTAAGGGT-- 278
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 237 AACTTGAGACTTTAGCAAGATGGAGACTGTGAGACCAATGGTTGTTGCTCCTAAGGGTAA 296
Query 279 -AAACTCAGACGCAAGTTTGCGAAAGTTCTTAACATTCATAAGCTAACGGGTGTTGCTCC 337
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 297 CAAACTCAGACGCAAGTTTGCTAAAGTTCTTAACATTCATAAGCTAACGGGTGTTGCTCC 356
Query 338 AGAAGGGGAAATGAAGAAGATAAAGTTCGATTCCAAAACCGCTAAGCTGTCTGAGTCTTT 397
|||||| ||||||||||||||||||||||||||||||||||||||| |||||||||| ||
Sbjct 357 AGAAGGAGAAATGAAGAAGATAAAGTTCGATTCCAAAACCGCTAAGTTGTCTGAGTCGTT 416
Query 398 CTACAAGCTTGAGGAAGAGTACGAGAGAAGTCTGGCATTGGAAGCTCTTCTTGCGAAGCT 457
||||||||||||||||||||| |||||||||| || ||||||||||||||||||||||||
Sbjct 417 CTACAAGCTTGAGGAAGAGTATGAGAGAAGTCAGGGATTGGAAGCTCTTCTTGCGAAGCT 476
Query 458 TTTTGCTACGGTTTCTTCCATCAAAGCGGCTTATGCGCAGTTACAGCATTCTCAGTCTCC 517
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 477 TTTTGCTACGGTTTCTTCGATCAAAGCGGCTTATGCGCAGTTACAGCATTCTCAGTCTCC 536
Query 518 GTATGACTCGATCGGGATTCAAAAAGCAGACAACTTGGTAGTCGCCGAGCTTAAGACTTT 577
||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 537 GTATGACTCTATCGGGATTCAAAAAGCAGATAACTTGGTAGTCGCCGAGCTTAAGACTTT 596
Query 578 GTCTGAGATTAAACAATGTTTCTTGAAGAAACAGGTGGATCCAAATCCCGAAAGGACTTT 637
||||||| | |||||||||||| |||||||||| |||||||||||||||||||| ||| |
Sbjct 597 GTCTGAGCTGAAACAATGTTTCATGAAGAAACAAGTGGATCCAAATCCCGAAAGAACTCT 656
Query 638 GGTACTCGCGGAGATTCAAGAGCTGAGGAGTCTATTGAAAACGTATGAGATAATGGGGAA 697
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 657 GGTTCTCGCGGAGATTCAAGAGCTGAGGAGTCTATTGAAAACGTATGAGATAATGGGGAA 716
Query 698 GAAGCTTGAGTCTCAGTATAAGCTTAAAGACTCGGAGATTATATTTCTAAGAGAGAAACT 757
|||||| ||||||||||| |||||||||||||| |||||||||||||| |||||||||||
Sbjct 717 GAAGCTGGAGTCTCAGTACAAGCTTAAAGACTCAGAGATTATATTTCTGAGAGAGAAACT 776
Query 758 CGATGAATCGATGAAACAGAACAAGTTGACAGAGAAGAGACTTAACGAAAGCGGACAACT 817
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 777 TGATGAATCGATGAAACAGAACAAGTTGACAGAGAAGAGACTTAACCAAAGCGGACAACT 836
Query 818 TTGCAATCCTCTTGACAATCTTCACCTATCGGCGCTTAATCCAACACATTTCGTTACTTA 877
||||||||| |||||||||||||||||||| ||||| |||||||||||||||||||||||
Sbjct 837 TTGCAATCCACTTGACAATCTTCACCTATCTGCGCTAAATCCAACACATTTCGTTACTTA 896
Query 878 CCTACACCACACAGTCAAATCCACCAGAGGATTCGTGAAGCTAATGATCGAACAAATGAA 937
|| |||||||||||||| ||||||||||| ||||| |||||||||||||||||||||||
Sbjct 897 TCTGCACCACACAGTCAAGTCCACCAGAGGTTTCGTCAAGCTAATGATCGAACAAATGAA 956
Query 938 ACTAGCTGGTTGGGATATATCATCAGCTGCTAATTCGATCCATCCCGGTGTGTTTTACTA 997
||| ||||| |||||||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct 957 ACTCGCTGGATGGGATATTTCATCAGCTGCTAATTCGATCCATCCCGGTGTGTTCTACTA 1016
Query 998 CAAGCAAGACCACAAGTGTTTCACTTTCGAACACTTTGTCACCAATGTAATGTTCGAAGC 1057
|||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||
Sbjct 1017 CAAGCAAGACCACAAGTGTTTCACTTTCGAACACTTTGTCTCCAATGTGATGTTCGAAGC 1076
Query 1058 ATTTCATCTACCGTACTTCTCAACTTCAAGCGATTCAAGAAGCTACAAGAAGAAGAAACA 1117
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1077 GTTTCATCTACCGTACTTCTCAACTTCAAGCGAGTCAAGAAGCTACAAGAAGAAGAAACA 1136
Query 1118 GAGCAATGCAGATAGAGAAATGTTCTTTGAAAGGTTTAAAGAACTCAGGTCGATGAAATC 1177
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1137 GAGCAATGCAGATAGAGAAATGTTCTTTGAAAGGTTTAAAGAACTCAGGTCGATGAAAGC 1196
Query 1178 GAAAGATTATCTAACCGCGCGGCCTAAATCAAGATTCGCTAGGTTCTGTCGAGCCAAGTA 1237
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1197 GAAAGATTATCTAACCGCGAGGCCTAAATCAAGATTCGCTAGGTTCTGTCGAGCCAAGTA 1256
Query 1238 CTTGCAGCTTATACATCCAAAGATGGAGCAAGCTTTCTTCGGACATTTGCATTTGAGAAA 1297
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1257 CTTGCAGCTTATACATCCAAAGATGGAGCAAGCTTTCTTCGGACATTTGCATTTGAGAAA 1316
Query 1298 CCAAGTTTCTGCTGGTGAGTTCCCTGAGACGAGCTTATGCTCTGGATTTCTTGAAATGGC 1357
|||||||||||||||||| ||||| ||||||||||||| |||||||||||||||||||||
Sbjct 1317 CCAAGTTTCTGCTGGTGAATTCCCGGAGACGAGCTTATTCTCTGGATTTCTTGAAATGGC 1376
Query 1358 GAAAAGGATTTGGCTTTTGCATTGCTTGGCTTTCTCTTTTGAACATGAAGCTGAGATCTT 1417
|||| | |||||||||||||||||||||||| |||||||||||| |||||||||||||||
Sbjct 1377 GAAACGAATTTGGCTTTTGCATTGCTTGGCTCTCTCTTTTGAACGTGAAGCTGAGATCTT 1436
Query 1418 TCGAGTACCTAAAGGTTGTAGATTCTCTGAAGTGTATATGAAGAGTGTAGCTGAAGAAGC 1477
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1437 TCGAGTACCTAAAGGTTGTAGATTCTCTGAAGTGTATATGAAGAGTGTAGCAGAAGAAGC 1496
Query 1478 GTTTTTTCCGGCGGCGGAGAGTTCGCCGGAATCTGAGCCACGTGTCGCGTTCACGGTTGT 1537
|||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1497 GTTTTTCCCGGCGGCGGAGAGTTCGCCGGAGTCTGAGCCACGTGTCGCGTTCACGGTTGT 1556
Query 1538 TCCAGGGTTTAGGATTGGGAAGACTTCAATACAATGTGAGGTCTATCTCTCGCTTTCATG 1597
|||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1557 TCCAGGGTTTAGAATTGGGAAGACTTCAATACAATGCGAGGTCTATCTCTCGCTTTCATG 1616
Query 1598 ATCGCCGTTCGATCTAAGATTCGAAAACGGACGGTGAGGATTCTTGGGCGATTTGGTAAT 1657
||||||||| |||||||||| |||||||||||||||| |||||||||||| |||||||||
Sbjct 1617 ATCGCCGTTTGATCTAAGATCCGAAAACGGACGGTGAAGATTCTTGGGCGGTTTGGTAAT 1676
Query 1658 TTCTGGAAATACTGGGGTATTTTTAGAAAATGGAGAAAAATTGTGGGCCGTTGGATTTGA 1717
||||| |||| |||||||| |||||||||| ||||||||||||||||||||||||||||
Sbjct 1677 TTCTGAAAATGGTGGGGTATGTTTAGAAAATTGAGAAAAATTGTGGGCCGTTGGATTTGA 1736
Query 1718 AGTAGCGAAGTAGTGTTGTGTTTAATGttttttttt---CTGTCTTATGAGTTTTGTCGA 1774
||||||||| ||| |||||||||| ||||||||||| ||||||| |||||||||||||
Sbjct 1737 AGTAGCGAACTAGAGTTGTGTTTA-TGTTTTTTTTTTTTCTGTCTTTTGAGTTTTGTCGA 1795
Query 1775 TATTAGTTCAGAGAACACAGAGGCATCTTTTAGCTGTTGTCCATTGAATATTTATCTCtt 1834
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1796 TATTAGTTCAGAGAACACAGAGGCATCTTTTAGCTGTTGTCCATTGAATATTTATCTCTT 1855
Query 1835 tttttAATATAATATGTAAATATTTTAT 1862
||| |||||||||||||||||||||||
Sbjct 1856 TTT--AATATAATATGTAAATATTTTAT 1881
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 92168200620
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5