BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg474470
Length=747
Score E
Sequences producing significant alignments: (Bits) Value
AT1G53400.1 | Symbols: | Ubiquitin domain-containing protein |... 1206 0.0
> AT1G53400.1 | Symbols: | Ubiquitin domain-containing protein
| chr1:19924752-19926631 FORWARD LENGTH=833
Length=833
Score = 1206 bits (653), Expect = 0.0
Identities = 718/749 (96%), Gaps = 6/749 (1%)
Strand=Plus/Plus
Query 1 AATCATCAACACCGATTCATCGTCATCTTCAACTCGGTCTTGATCTTCTTCTTTCTACCG 60
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1 AATCATCAACACCGATTCATCGTCATCTTCAACTCGGTCTTGATCTTCGTCTTTCTACCG 60
Query 61 ACATCTAATTTATTTGTCTCAAGATTCG-CCaaaaaaaTCTCTTTGCTTTCTCTTAAGGA 119
||||||||||| ||||||| |||||||| ||||||||||||||||||||| ||||||
Sbjct 61 ACATCTAATTTGTTTGTCTGAAGATTCGTAAAAAAAAATCTCTTTGCTTTCTATTAAGG- 119
Query 120 AAGaaaaaaaGTTTGCGACTTTGATTGGTTTCGATGAAGCTTCGACAAACCCACTGTTTT 179
|| || |||||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct 120 AA-AAGAAAAGTTTGCGACTTTGATTGGTTTCGATGAAGCTTCGACAAACACAGGGTTTT 178
Query 180 GTCTGAATCCTTTTGGTTTATTTCCTGAGAGAATTTGTGTTTTTTACTTGAAGGGTTTGA 239
||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||
Sbjct 179 GTCTGAATCCTTTTGGTTTATTTCC-GAGAGAATTTGTGTTTTTTACTTTAAGGGTTTGA 237
Query 240 AAGAAGAAGCAAGAACATTAATGGGTTGTGCTGGATCGACACAGTCTCAAGCAGATGGGT 299
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 238 AAGAAGAAGCAAGAACATAAATGGGTTGTGCTGGATCGACACAGTCTCAAGCAGATGGGT 297
Query 300 CAGTGAAGAAAATTAGAAAGCCGAAACCGTGGAAGCATACCCAACCGATCACGAAAGCTG 359
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 298 CAGTGAAGAAAATTAGGAAGCCGAAACCGTGGAAGCATACCCAACCGATCACGAAAGCTG 357
Query 360 AGCTTATGAAACTTAGAGAAGAGTTTTGGGACACTGCTCCTCACTATGGCGGTAGAAAAG 419
||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||
Sbjct 358 AGCTTATGAAACTTAGAGAAGAGTTTTGGGACACTGCTCCTCATTATGGTGGTAGAAAAG 417
Query 420 AGATATGGGACGCACTTCGGGCAGCTGCAGAAGCTGATATATCTCTTGCACAAGCAATTG 479
||||||||||||||||||| || |||||||||||||| ||||||||||||||||||||||
Sbjct 418 AGATATGGGACGCACTTCGCGCTGCTGCAGAAGCTGACATATCTCTTGCACAAGCAATTG 477
Query 480 TGGACAGTGCAGGAGTCATTGTTCAGAACACAGATCTCACTGTATGCTATGACGAGAGAG 539
|||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||
Sbjct 478 TGGACAGTGCAGGAGTCATTGTTCAGAACACAGATCTCACAGTCTGCTATGACGAGAGAG 537
Query 540 GTGCTAAGTATGAGCTACCGAAGTATGTTCTTAGCGAGCCTACCAATTTGGAGGAAGAAA 599
||||||||||||||||||| ||||||||||| |||||||||||||| |||||||||||||
Sbjct 538 GTGCTAAGTATGAGCTACCTAAGTATGTTCTAAGCGAGCCTACCAACTTGGAGGAAGAAA 597
Query 600 ATTGATTTAAGATCAAGAATATTCGAAAAGACAA-AAAAGAAAAGAACCAAATGTAAATC 658
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 598 ATTGATTTAAGATCAAGAATATTCGAAAAGACAAGAAAAGAAAAGAACCAAATGTAAATC 657
Query 659 TTGTGTGTAAGTAGTTACATTAGGATTCTCTGCTTTTGTCTATTTTAACACTTATTAAAA 718
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 658 TTGTGTGTAAGTAGTTACATTAGGATTCTCTGCTTTTGTCTATTTAAACACTTATTAAAA 717
Query 719 AAGATTGATTCCCACAtctctctctctct 747
| |||||||||||||||||||||| ||||
Sbjct 718 A-GATTGATTCCCACATCTCTCTCCCTCT 745
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36269054134
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5