BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg474474
Length=2086
Score E
Sequences producing significant alignments: (Bits) Value
AT1G53450.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 1563 0.0
AT1G53440.1 | Symbols: | Leucine-rich repeat transmembrane pro... 730 0.0
AT1G53430.1 | Symbols: | Leucine-rich repeat transmembrane pro... 673 0.0
> AT1G53450.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT3G14830.2);
Has 71 Blast hits to 71 proteins in 12 species: Archae - 0;
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 71; Viruses
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:19951235-19954115
REVERSE LENGTH=2150
Length=2150
Score = 1563 bits (846), Expect = 0.0
Identities = 948/997 (95%), Gaps = 8/997 (1%)
Strand=Plus/Plus
Query 625 GGCTTATGTTGACACAAAAGAGGACTCAAG-GCTTTCTAAGACAGATACTGCTTCCTCTG 683
||||||||| |||||||| ||| |||| || | |||||||||||||||||||||||||||
Sbjct 651 GGCTTATGTAGACACAAAGGAGAACTC-AGCGTTTTCTAAGACAGATACTGCTTCCTCTG 709
Query 684 TTACTGTGTCTGAGGAGAAAGTTACAGAATTCGAATTCAGGACTATTGGATTACATAGGA 743
|||||||| |||||||||||||||||||||||| || ||||||||||||||||||||||
Sbjct 710 GTACTGTGTATGAGGAGAAAGTTACAGAATTCGATTTAAGGACTATTGGATTACATAGGA 769
Query 744 GACCAAAGGGAACGGTTGAGCTATCATCAAGTTATGAAAGTAGAACAAGTGA-TATGGAA 802
|| |||||||||||||||||||||||||||||||||||| ||| |||||| | |||||||
Sbjct 770 GAGCAAAGGGAACGGTTGAGCTATCATCAAGTTATGAAACTAGGACAAGT-AGTATGGAA 828
Query 803 CATTCGTTAGCAGCCAGGGGAGATCTTTGGAGAGTAGAAGCTTCTACTTCAAGTTCCCCT 862
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 829 CATTCGTTAGCAGCCAGGGGAGATCTTTGGAGAGTAGAAGCTTCTACTTCAAATTCCCCT 888
Query 863 GCAAGAGATGATAGCTCATCTCTCTTTCTACTCCAGCTCGGACCTCTGCTATTTCTGCGC 922
| |||||||||||||| |||||||||||||||||||| ||||||||| |||||||||||
Sbjct 889 GTGAGAGATGATAGCTCGTCTCTCTTTCTACTCCAGCTTGGACCTCTGTTATTTCTGCGC 948
Query 923 GATTCAACTCTTCTTCTACCTGTTCATTTATCAAAGCAACACATACTCTGGTACGGGTAT 982
||||||||||||||| | |||||||||||||||||||||||| | ||||||||||| |||
Sbjct 949 GATTCAACTCTTCTTTTGCCTGTTCATTTATCAAAGCAACACTTGCTCTGGTACGGATAT 1008
Query 983 GATAGAAAGAAAGGTATGCATTCACTGTGTCCAGCTTTGTGGTCAAAGCATCGAAGATGG 1042
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1009 GATAGAAAGAAAGGTATGCATTCACTGTGTCCAGCTTTGTGGTCAAAGCATCGAAGGTGG 1068
Query 1043 CTTATGATGTCAATGCTCTGCCTCAATCCTTTAGATTGCTCATTTGTAGACTTGCAATTC 1102
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1069 CTTATGATGTCAATGCTCTGCCTCAATCCTTTAGATTGCTCATTTGTAGACTTGCAATTC 1128
Query 1103 CCAAATGGACAATTAACATATGTATCTGGTGAGGGATTGACGACAAGTGTCTTTGTTCCT 1162
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1129 CCAAATGGACAATTAACATATGTTTCTGGTGAGGGATTGACGACAAGTGTCTTTGTTCCT 1188
Query 1163 TTATGTGGCGGTCTTCTTCAAGCGCAAGGTCAATATCCAGGCGATATGAGATTTAGTTTC 1222
||||| |||||||| |||||||||||||||||||||||||| ||||||||||| ||||||
Sbjct 1189 TTATGCGGCGGTCTCCTTCAAGCGCAAGGTCAATATCCAGGAGATATGAGATTCAGTTTC 1248
Query 1223 TCCTGCAAGAGTAAACAGGGAACACGAATCACACCGATAG-TAAATTGGCCTGACAAATC 1281
|| ||||||||||||||||||||||||||||||||||| | |||| ||||||||||||||
Sbjct 1249 TCTTGCAAGAGTAAACAGGGAACACGAATCACACCGAT-GATAAACTGGCCTGACAAATC 1307
Query 1282 ATTCGCATTGGGTGTTTCTCAAGCCTTGGCTTGGCGTAGGTCCGGTCTCATGTTGAAACC 1341
||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1308 ATTGGCATTGGGTGTTTCTCAAGCCTTGGCTTGGCGTAGGTCCGGTGTCATGTTGAAACC 1367
Query 1342 TGCAATTCAACTTAGCGTGTGCTCTACATTTGGTGGAAGCAATCCCGGGATTAAAACCGA 1401
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1368 TGCAATTCAACTTAGTGTGTGCTCTACATTTGGTGGAAGCAATCCCGGGATTAAAACCGA 1427
Query 1402 AGTTATTCACTCGTTGAATGATCACATCAATATGATATGTGGCTGCGCATTCACAGCTCA 1461
||||||||| |||||||||||| | |||||||||||||||||||| ||||||||||||||
Sbjct 1428 AGTTATTCAGTCGTTGAATGATAATATCAATATGATATGTGGCTGTGCATTCACAGCTCA 1487
Query 1462 TCCTTCAGCATTTGCATCTGTTTCAC-TTGGTCGGTCCAAGTGGAATGGGAACATTGGAC 1520
||||||| |||||||||||||||| | |||||||||| ||||||||||||||||||||||
Sbjct 1488 TCCTTCAACATTTGCATCTGTTTC-CTTTGGTCGGTCTAAGTGGAATGGGAACATTGGAC 1546
Query 1521 GAACTGGCATAGTTGTTAGAGCTGATACTCCTCTTCCAAACGTTGCTCGACCTTCTTTCT 1580
|||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1547 GAACAGGAATAGTTGTTAGAGCTGATACTCCTCTTCCAAACGTTGCTCGACCTTCTTTCT 1606
Query 1581 CCATTCAGATCAACAATGCTTTCGAGTTCTGAAAATA 1617
|||||||||||||||||||||||||||||||||||||
Sbjct 1607 CCATTCAGATCAACAATGCTTTCGAGTTCTGAAAATA 1643
Score = 568 bits (307), Expect = 1e-160
Identities = 425/477 (89%), Gaps = 27/477 (6%)
Strand=Plus/Plus
Query 120 AGTGGAGTTGCAAAGTTTATTCCTTTGAT-AAAT-T--C-----TCCGAGTTTGTCTCGC 170
||| ||||||||||||||| ||||||||| |||| | | ||||||||||||||||
Sbjct 191 AGTAGAGTTGCAAAGTTTAATCCTTTGATAAAATCTCCCGAGATTCCGAGTTTGTCTCGC 250
Query 171 ATGTGGATTTGAATACCGAAGAAACAATGTCTGTGGAAAGATCTTTTGAAGCTTGGGAAG 230
||| |||||||||||||||||||| |||||| |||||||||||||| |||||||||||||
Sbjct 251 ATGAGGATTTGAATACCGAAGAAAAAATGTCAGTGGAAAGATCTTTGGAAGCTTGGGAAG 310
Query 231 AAGTTCAGAGACATGGACAAGACTTAGCTGACAGACTTGCTCAGGGCTTTAATGGTTTGA 290
|||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||
Sbjct 311 AAGTTCAGAGACATGGACAAGACTTAGCTGACCGACTTGCTCAGGGCTTTAACGGTTTGA 370
Query 291 TTCAAATCAACCCACCTTCATTTCCATGGCCGAATCATTATAATTCCAAGCTATTCGATC 350
||||||||||||||||||||||||||| |||| | ||| || | | || |
Sbjct 371 TTCAAATCAACCCACCTTCATTTCCAT---CGAAGC--TAT--TT----G--A-TC--T- 413
Query 351 TCGAGTTCTCCGGTCAGCATTTCGGGATTAGGGATTCTAAGTTTTCTATTAACCAACCCA 410
| |||||||| ||||||||||||||||||||||||||| ||||||||| |||||||||
Sbjct 414 T-GAGTTCTCTAGTCAGCATTTCGGGATTAGGGATTCTAGGTTTTCTATCCACCAACCCA 472
Query 411 TCAATGGCGTTTCGGCTATTCTTGATATTGGGAACAAGATTGGTCAAGCTGGTGTTGATT 470
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 473 TCAATGGCGTTTCGGCTATTCTTGATATTGGGAACAAGATTGGTCAAGCGGGTGTTGATT 532
Query 471 TTGGCGCTGGATTGAATGTGATGGTTCAGCAATTCTTCAGAAGGTTACCAGTACCGTTCC 530
||||| ||||||||||||||||||||||||| |||||||||||||| || ||||||||||
Sbjct 533 TTGGCTCTGGATTGAATGTGATGGTTCAGCAGTTCTTCAGAAGGTTGCCTGTACCGTTCC 592
Query 531 GACATGACGAGAACCCGTCTGTTTCTACTGAGAGAGATACTGTCAGGAGGAGCCATA 587
|||| || |||||| || |||||||||||||||||||||||||| |||||||||||
Sbjct 593 GACACGATGAGAACGTGTTTGTTTCTACTGAGAGAGATACTGTCACGAGGAGCCATA 649
Score = 355 bits (192), Expect = 9e-97
Identities = 232/252 (92%), Gaps = 0/252 (0%)
Strand=Plus/Plus
Query 1614 AATAAGCTAACATCTTTGCTAGGCTCAGAGAAGGAAGAATCAACCCAAGGACCGTCCATC 1673
|||| ||||||||||||||| || ||||||||||||||||| ||||||||||||||||||
Sbjct 1899 AATAGGCTAACATCTTTGCTCGGATCAGAGAAGGAAGAATCGACCCAAGGACCGTCCATC 1958
Query 1674 GATGAGGAGCTTTTGTGTTCTCTGTTGCTTGTATGGGTCGAAACCTGTGACTCGCTGTCT 1733
|| |||||||||||||||||| |||| ||||||| ||| || || |||||||||||||||
Sbjct 1959 GAGGAGGAGCTTTTGTGTTCTTTGTTTCTTGTATAGGTTGAGACTTGTGACTCGCTGTCT 2018
Query 1734 TGTGACAAAAGCTCAAAGGCCTTAAACCTCATTGCAGCTGAACCACTTGGATCAGCTTCA 1793
||||||||| |||| |||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 2019 TGTGACAAATGCTCTAAGGCCTTAAACCTCATTGCGGCTGAACCACTTGGATCAGCTTCA 2078
Query 1794 CGTTTCACCAGTGGTGGTTGGACTTTGATTTTTCCTTCCAACATTCTTACGACAGATGAC 1853
||||||||||||||||||||||||||||||||||||| | ||| ||||| |||||||||
Sbjct 2079 CGTTTCACCAGTGGTGGTTGGACTTTGATTTTTCCTTGTAGCATACTTACAACAGATGAC 2138
Query 1854 ATTGGTGGTCTC 1865
|| |||||||||
Sbjct 2139 ATCGGTGGTCTC 2150
> AT1G53440.1 | Symbols: | Leucine-rich repeat transmembrane protein
kinase | chr1:19945959-19951562 FORWARD LENGTH=3108
Length=3108
Score = 730 bits (395), Expect = 0.0
Identities = 447/473 (95%), Gaps = 0/473 (0%)
Strand=Plus/Minus
Query 1614 AATAAGCTAACATCTTTGCTAGGCTCAGAGAAGGAAGAATCAACCCAAGGACCGTCCATC 1673
|||| ||||||||||||||| || ||||||||||||||||| ||||||||||||||||||
Sbjct 3032 AATAGGCTAACATCTTTGCTCGGATCAGAGAAGGAAGAATCGACCCAAGGACCGTCCATC 2973
Query 1674 GATGAGGAGCTTTTGTGTTCTCTGTTGCTTGTATGGGTCGAAACCTGTGACTCGCTGTCT 1733
|| |||||||||||||||||| |||| ||||||| ||| || || |||||||||||||||
Sbjct 2972 GAGGAGGAGCTTTTGTGTTCTTTGTTTCTTGTATAGGTTGAGACTTGTGACTCGCTGTCT 2913
Query 1734 TGTGACAAAAGCTCAAAGGCCTTAAACCTCATTGCAGCTGAACCACTTGGATCAGCTTCA 1793
||||||||| |||| |||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 2912 TGTGACAAATGCTCTAAGGCCTTAAACCTCATTGCGGCTGAACCACTTGGATCAGCTTCA 2853
Query 1794 CGTTTCACCAGTGGTGGTTGGACTTTGATTTTTCCTTCCAACATTCTTACGACAGATGAC 1853
||||||||||||||||||||||||||||||||||||| | ||| ||||| |||||||||
Sbjct 2852 CGTTTCACCAGTGGTGGTTGGACTTTGATTTTTCCTTGTAGCATACTTACAACAGATGAC 2793
Query 1854 ATTGGTGGTCTCAATGTCGGAGATGGGTTCGTACAGAGTAAAGCTATGTTCAACATCCTC 1913
|| |||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||
Sbjct 2792 ATCGGTGGTCTCAATGTTGGAGATGGGTTTGTACAGAGTAAAGCTATGTTCAACATCCTC 2733
Query 1914 ATCGCTTCTTTCTTCGAAAAGCTTGTACCGAGATCTGGATCCATGAGTTCTAGAAGACTC 1973
|| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 2732 ATTGCTTCTTTCTTCGAAAAGCTTGTACCGAGATCTGGATCCACGAGTTCTAGAAGACTC 2673
Query 1974 CCTTGTTCTTGCAAGACATATGCCCAATCAAGAAGGTAAATAAACTCTTCTTTTGGTCTG 2033
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 2672 CCTTGTTCTTGCAAGACATATGCCCAGTCAAGAAGGTAAATAAACTCTTCTTTTGGTCTG 2613
Query 2034 TAATTTGTGTTGCTCTTTCCGCTAACAATCTCTAAACAGACAACACCGAAGCT 2086
||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 2612 TAATTTGTGTTGCTCTTTCCGCTAACAATCTCTAAACAGACTACACCGAAGCT 2560
> AT1G53430.1 | Symbols: | Leucine-rich repeat transmembrane protein
kinase | chr1:19935167-19941088 FORWARD LENGTH=3353
Length=3353
Score = 673 bits (364), Expect = 0.0
Identities = 436/471 (93%), Gaps = 3/471 (1%)
Strand=Plus/Minus
Query 1619 GCTAACATCTTTGCTAGGCTCAGAGAAGGAAGAATCAACCCAAGGACCGTCCATCGATGA 1678
|||||||||||| | ||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 3143 GCTAACATCTTTCCCAGGCTCAGAGAAGGAAGAATCTACCCAAGGACCGTCCATCGATGA 3084
Query 1679 GGAGCTT-T-T-GTGTTCTCTGTTGCTTGTATGGGTCGAAACCTGTGACTCGCTGTCTTG 1735
||||||| | | || |||||||| |||| || ||||| || |||||||| ||||||||
Sbjct 3083 GGAGCTTATGTCTTGCTCTCTGTTTCTTGCATATGTCGAGACTTGTGACTCACTGTCTTG 3024
Query 1736 TGACAAAAGCTCAAAGGCCTTAAACCTCATTGCAGCTGAACCACTTGGATCAGCTTCACG 1795
|||||||||||| |||||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct 3023 TGACAAAAGCTCTAAGGCCTTAAACCTCATTGCTGCTGAACCACTTGGATCTGCTTCACG 2964
Query 1796 TTTCACCAGTGGTGGTTGGACTTTGATTTTTCCTTCCAACATTCTTACGACAGATGACAT 1855
|||||||| ||||||||||||||||||||||||||| ||||| ||||| |||||||||||
Sbjct 2963 TTTCACCAATGGTGGTTGGACTTTGATTTTTCCTTCTAACATACTTACAACAGATGACAT 2904
Query 1856 TGGTGGTCTCAATGTCGGAGATGGGTTCGTACAGAGTAAAGCTATGTTCAACATCCTCAT 1915
||||||||||||||| |||||||||||||| |||||||| ||||||||||||||||||||
Sbjct 2903 TGGTGGTCTCAATGTTGGAGATGGGTTCGTGCAGAGTAATGCTATGTTCAACATCCTCAT 2844
Query 1916 CGCTTCTTTCTTCGAAAAGCTTGTACCGAGATCTGGATCCATGAGTTCTAGAAGACTCCC 1975
|||||||||||||||||||||||| |||||||| ||||| | ||||||||||||||| ||
Sbjct 2843 CGCTTCTTTCTTCGAAAAGCTTGTGCCGAGATCCGGATCAACGAGTTCTAGAAGACTACC 2784
Query 1976 TTGTTCTTGCAAGACATATGCCCAATCAAGAAGGTAAATAAACTCTTCTTTTGGTCTGTA 2035
||||||||||||||||||||||||||| |||||||||| ||||||||| |||||||||||
Sbjct 2783 TTGTTCTTGCAAGACATATGCCCAATCCAGAAGGTAAACAAACTCTTCCTTTGGTCTGTA 2724
Query 2036 ATTTGTGTTGCTCTTTCCGCTAACAATCTCTAAACAGACAACACCGAAGCT 2086
|||||||||||||||||| |||||||||||||||||||||||||| |||||
Sbjct 2723 ATTTGTGTTGCTCTTTCCACTAACAATCTCTAAACAGACAACACCAAAGCT 2673
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 103413122700
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5