BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg474476
Length=1074
Score E
Sequences producing significant alignments: (Bits) Value
AT1G53460.1 | Symbols: | BEST Arabidopsis thaliana protein mat... 1587 0.0
> AT1G53460.1 | Symbols: | BEST Arabidopsis thaliana protein match
is: Ran BP2/NZF zinc finger-like superfamily protein (TAIR:AT1G70650.2);
Has 485 Blast hits to 413 proteins in 88 species:
Archae - 11; Bacteria - 27; Metazoa - 119; Fungi - 17;
Plants - 101; Viruses - 2; Other Eukaryotes - 208 (source:
NCBI BLink). | chr1:19954490-19956632 REVERSE LENGTH=1136
Length=1136
Score = 1587 bits (859), Expect = 0.0
Identities = 1016/1087 (93%), Gaps = 29/1087 (3%)
Strand=Plus/Plus
Query 1 TCTAAAACCCTTTGCGTCAC-TCTCTAGAGAAGATCTCAGG-TGCTTCAATGGC--GCTT 56
|||||||||||||||||| | ||||||||||| |||| || |||| ||||||| ||||
Sbjct 3 TCTAAAACCCTTTGCGTCTCTTCTCTAGAGAATCTCTC-GGTTGCTCCAATGGCTGGCTT 61
Query 57 ATTGATTATTATTAATCACTGAATCTTC-CAAATTTGATTTCGCAAGCTGAAT-CTCTGA 114
|||| ||| |||||||||||||||| || |||| ||||||||||||||||| | || |||
Sbjct 62 ATTGGTTACTATTAATCACTGAATC-TCACAAA-TTGATTTCGCAAGCTGACTCCTTTGA 119
Query 115 AGCCATGGCGATTCTGCTCAAAACAATTCTCAAAAATCAAACTTTGTTTAAGACTCTCTT 174
|||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||
Sbjct 120 AGCCATGGCGATTCTGCTCAGATCAATTCTCAAAAATCAAACTTTGTTTAAGACTCTCTT 179
Query 175 GAAACCTCAGTTTGTCTCGCCTTTGATTGTTTCCAGAAACTTTACATCGGAAGAAGCTCA 234
||||||||| || | ||||||||||||| ||||||||||||||||||||||||||| |
Sbjct 180 GAAACCTCA--ATG-CGCGCCTTTGATTGTCTCCAGAAACTTTACATCGGAAGAAGCTTA 236
Query 235 TAAGAAGCCACTCTCTGTTTTCTTCGAAGAGGCTGTTGGATTAAGACCCAAATCAGAAAC 294
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 237 TAAGAAGCCACTCTCTGTTTTCTTCGAAGAGGCTGTTGGATTGAGACCCAAATCAGAAAC 296
Query 295 GAGCGAAATC---GAAGAAGAAG-AG--GGCAACGAATTGAAGAGAAAGCTTTTGGAATT 348
|||||||||| |||||||||| || |||||||| |||||||||||||||||||||||
Sbjct 297 GAGCGAAATCGAAGAAGAAGAAGAAGAAGGCAACGAGTTGAAGAGAAAGCTTTTGGAATT 356
Query 349 GGAGAGGAAACTCATAGAACTGAAGAAATCGGAACCTGTGAGAAAGAAGAAGCACAAGGG 408
||| |||||||||||||||||||||||||||||||||||||||||||| || || || ||
Sbjct 357 GGAAAGGAAACTCATAGAACTGAAGAAATCGGAACCTGTGAGAAAGAAAAAACAGAA-GG 415
Query 409 GA-AAGTTTTGATATCAGAGAAAACAGAGCAAAACGAGAAAAGGAATAATCTTTACAAGT 467
|| | ||| |||||| |||||||||||||||||||| |||||||||||||||
Sbjct 416 GAGAGGTTGTGATAT---------CAGAGCAAAACGAGAAAAGGCATAATCTTTACAAGT 466
Query 468 TGTTTAAAGGAGATGAAGAGAAGGAGATGAAGCAACATAGTAGGGAAAAGGAGGACGTGA 527
||||||| |||||||||||||| ||| | ||| ||||||||| ||||||||||||||| |
Sbjct 467 TGTTTAAGGGAGATGAAGAGAAAGAGGTAAAGAAACATAGTAAGGAAAAGGAGGACGTAA 526
Query 528 TTAGGGTTTATAAGGAGCTTCCTATAGAGATGGTTTCGTTTGTGAGGCTTCTGCATAAAG 587
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 527 TTAGGGTTTATAAGGAGCTTCCTATAGAGATGGTGTCGTTTGTGAGGCTTCTGCATAAAG 586
Query 588 AAGGGTATTTGAACAAGGCTAATTTCATCACTGGAGAAAAGTTAGATATGGGGAATCTTG 647
|||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||
Sbjct 587 AAGGGTATTTGAACAAGGCTAATTTCATTACTGGAGAAAAGTTGGATATGGGGAATCTTG 646
Query 648 ATGAAGAGTATGCTCGAACTTTTGTTAAGTTTGCTGCCGAAAGATTTGGAAAGGATTACC 707
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 647 ATGAAGAGTATGCTAGAACTTTTGTTAAGTTTGCTGCCGAAAGATTTGGAAAGGATTACC 706
Query 708 AGGAAATAGCAAAGTGGTTATCAGGTAGCGACCTGAAGAAGATTGTGCTCTTTGGTTGCC 767
|||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 707 AGGAGATAGCAAAGTGGTTATCAGGTAGTGACCTGAAGAAGATTGTGCTCTTTGGTTGCC 766
Query 768 CGAGTTTGGAAAAAAGGGCGGTATTCGCTGCTAAAACATTGCGCAACTTTTTCGATATCC 827
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 767 CGAGTTTGGAAAAAAGGGCGGTATTCGCTGCTAAAACATTGCGCAACTTTTTCGATATCC 826
Query 828 ATGAGAATAATGTGTGTGAGAAATGCGTGTTAAAAGAGAAGTGCAAGTTTCCAAACCAGA 887
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 827 ATGAGAATAATGTGTGCGAGAAATGCGTGTTAAAAGAGAAGTGCAAGTTTCCAAACCAGA 886
Query 888 GTGTATGGGATGGCAAAACAAAGCACTTGCACTTGTCTGTTGTGATGAAAGTCATCACAC 947
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 887 GTGTATGGGATGGCAAAACAAAGCACTTGCACTTGTCTGTTGTGATGAAAGTCATCACAC 946
Query 948 TATATCCATTGGACTTGACACATCCGAAGCTACAAGTTCCTCAAGAGGTACAAGACTCAG 1007
|||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 947 TATATCCATTAGACTTGACTCATCCGAAGCTACAAGTTCCTCAAGAGGTACAAGACTCAG 1006
Query 1008 TCTCAAGATTGCTGATGGAGATTCAGAACCTAAGCCGAACTATCTGTACTCCTCTCGCCT 1067
| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1007 TTTCAAGATTGCTGACGGAGATTCAGAACCTAAGCCGAACTATCTGTACTCCTCTCGCAT 1066
Query 1068 GAGTTAA 1074
|||||||
Sbjct 1067 GAGTTAA 1073
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52610171160
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5