BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg474478
Length=2520
Score E
Sequences producing significant alignments: (Bits) Value
AT1G53500.1 | Symbols: MUM4, RHM2, ATRHM2, ATMUM4 | NAD-depende... 4034 0.0
AT3G14790.1 | Symbols: RHM3, ATRHM3 | rhamnose biosynthesis 3 |... 1940 0.0
AT1G78570.1 | Symbols: RHM1, ROL1, ATRHM1 | rhamnose biosynthes... 985 0.0
> AT1G53500.1 | Symbols: MUM4, RHM2, ATRHM2, ATMUM4 | NAD-dependent
epimerase/dehydratase family protein | chr1:19966944-19969757
REVERSE LENGTH=2526
Length=2526
Score = 4034 bits (2184), Expect = 0.0
Identities = 2430/2543 (96%), Gaps = 40/2543 (2%)
Strand=Plus/Plus
Query 1 GAGTTTAATGTCGGACGCTAGACTCACGAGAAATCCGTAATATCTAAGA-GAAGAAAGGG 59
||||||||||||||||||||||||||||||||||||||||||||||||| | | |||||
Sbjct 1 GAGTTTAATGTCGGACGCTAGACTCACGAGAAATCCGTAATATCTAAGACG-ATCAAGGG 59
Query 60 TAAATTAGTCAATTGGCTCCTACGGTTCTCCGTAACTGTCTCAGAATATAAGAGGCGCAT 119
|||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||
Sbjct 60 TAAATTAGTCAATTTCCTCCTACGGTTCTCCGTAACTGTCTCAGAATATAAGAGGCACAT 119
Query 120 TGTTGAGAGAAGCTCCGTAGACCGTAGATTCCctcttcttcttcttcttcttcttcctct 179
|| |||||||||||||||||||||||||||||||||||||||||||| | |||||||||
Sbjct 120 TGCTGAGAGAAGCTCCGTAGACCGTAGATTCCCTCTTCTTCTTCTTC--C-TCTTCCTCT 176
Query 180 ctactgttttttcttttcata--t-t-tctctctctat-tc-----ttggtgaagtttct 229
||||||||||||||||||||| | | ||||||||| | || ||||||||||||||
Sbjct 177 CTACTGTTTTTTCTTTTCATATTTCTCTCTCTCTCTCTCTCTATAGTTGGTGAAGTTTCT 236
Query 230 ctctctaagtactctcttacgatcttc-ttctctcttGGGTTATCTGATTCTAACCTGAA 288
||| | | | |||||||| |||| || |||||||||||||||||||| ||||||| |||
Sbjct 237 ATCT-TTA-T-CTCTCTTAAGATC-TCTTTCTCTCTTGGGTTATCTGACTCTAACCAGAA 292
Query 289 TTGTGTCG-GTACAAATGGAT-GAT-ACTACTACGTATAAGCCAAAGAACATTCTCATTA 345
|||||||| | | || |||| ||| | ||||||||||||||||||||||||||||||||
Sbjct 293 TTGTGTCGATTTC-AA-GGATGGATGA-TACTACGTATAAGCCAAAGAACATTCTCATTA 349
Query 346 CTGGAGCTGCTGGATTCATTGCTTCTCATGTTGCCAACAGATTAATCCGTAGCTATCCTG 405
|||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||
Sbjct 350 CTGGAGCTGCTGGATTTATTGCTTCTCATGTTGCCAACAGATTAATCCGTAACTATCCTG 409
Query 406 ATTACAAGATCGTTG-TGTTGGACAAGCTTGATTACTGTTCAGATCTGAAGAATCTTGAT 464
||||||||||||||| | || |||||||||||||||||||||||||||||||||||||||
Sbjct 410 ATTACAAGATCGTTGTTCTT-GACAAGCTTGATTACTGTTCAGATCTGAAGAATCTTGAT 468
Query 465 CCTTCATTTTCTTCACCAAACTTCAAGTTTGTCAAAGGAGATATCGCTAGTGATGATCTC 524
||||| |||||||||||||| |||||||||||||||||||||||||| ||||||||||||
Sbjct 469 CCTTCTTTTTCTTCACCAAATTTCAAGTTTGTCAAAGGAGATATCGCGAGTGATGATCTC 528
Query 525 GTTAACTACCTTCTCATTACTGAAAACATTGATACGATAATGCATTTTGCTGCTCAAACT 584
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 529 GTTAACTACCTTCTCATCACTGAAAACATTGATACGATAATGCATTTTGCTGCTCAAACT 588
Query 585 CATGTTGATAACTCTTTTGGTAATAGCTTTGAGTTTACCAAGAACAATATCTATGGTACT 644
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 589 CATGTTGATAACTCTTTTGGTAATAGCTTTGAGTTTACCAAGAACAATATTTATGGTACT 648
Query 645 CATGTTCTTTTGGAAGCCTGTAAAGTTACAGGACAGATCAGGAGGTTTATCCATGTGAGT 704
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 649 CATGTTCTTTTGGAAGCCTGTAAAGTTACAGGACAGATCAGGAGGTTTATCCATGTGAGT 708
Query 705 ACCGATGAAGTCTATGGAGAAACCGATGAGGATGCTGCTGTAGGAAACCATGAAGCTTCA 764
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 709 ACCGATGAAGTCTATGGAGAAACCGATGAGGATGCTGCTGTAGGAAACCATGAAGCTTCT 768
Query 765 CAGCTCTTACCCACGAATCCCTACTCTGCCACTAAGGCTGGTGCTGAGATGCTTGTGATG 824
||||| ||||| |||||||| |||||||| ||||||||||||||||||||||||||||||
Sbjct 769 CAGCTGTTACCGACGAATCCTTACTCTGCAACTAAGGCTGGTGCTGAGATGCTTGTGATG 828
Query 825 GCTTATGGTAGATCATATGGATTGCCTGTTATTACCACTCGCGGGAACAATGTTTATGGG 884
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 829 GCTTATGGTAGATCATATGGATTGCCTGTTATTACGACTCGCGGGAACAATGTTTATGGG 888
Query 885 CCTAACCAGTTTCCTGAGAAAATGATTCCTAAGTTCATCTTGTTGGCTATGAGTGGGAAG 944
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 889 CCTAACCAGTTTCCTGAAAAAATGATTCCTAAGTTCATCTTGTTGGCTATGAGTGGGAAG 948
Query 945 CCGCTTCCCATCCATGGAGATGGATCTAATGTCCGGAGTTACTTGTACTGTGAAGACGTT 1004
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 949 CCGCTTCCCATCCATGGAGATGGATCTAATGTCCGGAGTTACTTGTACTGCGAAGACGTT 1008
Query 1005 GCTGAGGCTTTTGAGGTTGTTCTTCACAAAGGAGAAATCGGCCATGTCTACAATATCGGT 1064
||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||
Sbjct 1009 GCTGAGGCTTTTGAGGTTGTTCTTCACAAAGGAGAAATCGGTCATGTCTACAATGTCGGC 1068
Query 1065 ACAAAGAGAGAAAGGAGAGTGATCGATGTGGCTAGAGACATCTGCAAACTTTTCGGGAAA 1124
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1069 ACAAAAAGAGAAAGGAGAGTGATCGATGTGGCTAGAGACATCTGCAAACTTTTCGGGAAA 1128
Query 1125 GACCCTGAGTCAAGCATTCAGTTTGTTGAGAACCGACCCTTTAATGATCAAAGGTACTTC 1184
|||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct 1129 GACCCTGAGTCAAGCATTCAGTTTGTGGAGAACCGGCCCTTTAATGATCAAAGGTACTTC 1188
Query 1185 CTTGATGATCAGAAGCTGAAGAAATTGGGATGGCAAGAGCGAACAACAT-GGGAAGATGG 1243
||||||||||||||||||||||||||||| |||||||||||||||| || ||||||||||
Sbjct 1189 CTTGATGATCAGAAGCTGAAGAAATTGGGGTGGCAAGAGCGAACAA-ATTGGGAAGATGG 1247
Query 1244 ACTGAAGAAGACAATGGACTGGTACACTCAGAATCCTGAGTGGTGGGGTGATGTTTCTGG 1303
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1248 ATTGAAGAAGACAATGGACTGGTACACTCAGAATCCTGAGTGGTGGGGTGATGTTTCTGG 1307
Query 1304 AGCTTTGCTTCCTCATCCAAGAATGCTTATGATGCCCGGTGGAAGACTTTCTGATGGATC 1363
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1308 AGCTTTGCTTCCTCATCCGAGAATGCTTATGATGCCCGGTGGAAGACTTTCTGATGGATC 1367
Query 1364 TAGTGAGAAGAAAGACGCTGCAAGCAACACGGTCCAGACATTTACGGTTGTAACACCTAA 1423
||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||
Sbjct 1368 TAGTGAGAAGAAAGACGTTTCAAGCAACACGGTCCAGACATTTACGGTTGTAACACCTAA 1427
Query 1424 GGGTGGTGGTTCTGGTGACAAAGCTTCGTTGAAGTTTTTGATCTATGGTAAGACCGGTTG 1483
| ||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1428 GAATGGTGATTCTGGTGACAAAGCTTCGTTGAAGTTTTTGATCTATGGTAAGACTGGTTG 1487
Query 1484 GCTTGGTGGTCTTCTAGGGAAACTATGTGAGAAGCAAGGGATTACATATGAGTATGGGAA 1543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1488 GCTTGGTGGTCTTCTAGGGAAACTATGTGAGAAGCAAGGGATTACATATGAGTATGGGAA 1547
Query 1544 AGGACGTTTGGAGGATAGAGCTTCTCTTGTGGCGGATATTCGTAGCATCAAACCTACTCA 1603
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1548 AGGACGTCTGGAGGATAGAGCTTCTCTTGTGGCGGATATTCGTAGCATCAAACCTACTCA 1607
Query 1604 TGTCTTTAATGCTGCTGGTTTAACTGGCAGACCCAACGTTGACTGGTGTGAATCTCACAA 1663
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1608 TGTGTTTAATGCTGCTGGTTTAACTGGCAGACCCAACGTTGACTGGTGTGAATCTCACAA 1667
Query 1664 ACCAGAGACCATTCGCGTAAATGTCGCTGGTACTTTGACTCTAGCTGATGTTTGCAGAGA 1723
||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1668 ACCAGAGACCATTCGTGTAAATGTCGCAGGTACTTTGACTCTAGCTGATGTTTGCAGAGA 1727
Query 1724 GAATGATCTCTTGATGATGAACTTTGCCACCGGTTGCATCTTTGAGTATGATGCTGCACA 1783
|||||||||||||||||||||||| |||||||||||||||||||||||||| ||| ||||
Sbjct 1728 GAATGATCTCTTGATGATGAACTTCGCCACCGGTTGCATCTTTGAGTATGACGCTACACA 1787
Query 1784 TCCTGAGGGTTCGGGTATAGGTTTCAAGGAAGAAGACAAGCCAAATTTCTTTGGTTCTTT 1843
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1788 TCCTGAGGGTTCGGGTATAGGTTTCAAGGAAGAAGACAAGCCAAATTTCTTTGGTTCTTT 1847
Query 1844 CTACTCGAAAACCAAAGCCATGGTTGAGGAGCTCTTGAGAGAATATGACAATGTATGTAC 1903
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1848 CTACTCGAAAACCAAAGCCATGGTTGAGGAGCTCTTGAGAGAATTTGACAATGTATGTAC 1907
Query 1904 CTTGAGAGTCCGGATGCCAATCTCCTCAGACCTAAACAACCCAAGAAACTTCATCACGAA 1963
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1908 CTTGAGAGTCCGGATGCCAATCTCCTCAGACCTAAACAACCCGAGAAACTTCATCACGAA 1967
Query 1964 GATCTCACGCTACAACAAAGTGGTGGACATCCCGAACAGCATGACCATACTGGACGAGCT 2023
|||||| ||||||||||||||||||||||||||||||||||||||| |||| ||||||||
Sbjct 1968 GATCTCGCGCTACAACAAAGTGGTGGACATCCCGAACAGCATGACCGTACTAGACGAGCT 2027
Query 2024 TCTCCCGATCTCCATCGAGATGGCGAAGAGAAACCTAAGAGGGATATGGAACTTCACCAA 2083
|||||| ||||| ||||||||||||||||||||||||||||| |||||||| ||||||||
Sbjct 2028 TCTCCCAATCTCTATCGAGATGGCGAAGAGAAACCTAAGAGGCATATGGAATTTCACCAA 2087
Query 2084 CCCAGGGGTGGTGAGCCACAACGAGATACTGGAGATGTACAAGAATTACATCGAGCCAGG 2143
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 2088 CCCAGGGGTGGTGAGCCACAACGAGATATTGGAGATGTACAAGAATTACATCGAGCCAGG 2147
Query 2144 TTTTAAATGGTCCAACTTTACATTGGAAGAACAAGCAAAGGTCATTGTTGCTGCGCGAAG 2203
|||||||||||||||||| ||| ||||||||||||||||||||||||||||||| |||||
Sbjct 2148 TTTTAAATGGTCCAACTTCACAGTGGAAGAACAAGCAAAGGTCATTGTTGCTGCTCGAAG 2207
Query 2204 CAACAACGAAATGGATGGATCTAAACTAAGCAAGGAGTTCCCAGAGATGCTAC-CCATCA 2262
||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||
Sbjct 2208 CAACAACGAAATGGATGGATCTAAACTAAGCAAGGAGTTCCCAGAGATGCT-CTCCATCA 2266
Query 2263 AAGAGTCACTGATCAAATACGTCTTTGAACCAAACAAGAGAACCTAAGCCTTCAATGAAC 2322
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2267 AAGAGTCACTGCTCAAATACGTCTTTGAACCAAACAAGAGAACCTAAGCCTTCAATGAAC 2326
Query 2323 ATCACACTCTTGCCACAAGTGCTTACTTTAAATTGtttc-ttttacttttttttttcttt 2381
||||||||||| |||||||||||||||||||| ||||| |||| ||||||||| ||||
Sbjct 2327 ATCACACTCTT-CCACAAGTGCTTACTTTAAACTGTTTTGTTTTG-TTTTTTTTT-CTTT 2383
Query 2382 ttgccttttctttcaacagaaatatcttttt-atatttACTCATCGTCTTATGATCCTTG 2440
|||||||||||| ||||||| |||||||||| ||||||||||||||||||||||||||||
Sbjct 2384 TTGCCTTTTCTTCCAACAGATATATCTTTTTTATATTTACTCATCGTCTTATGATCCTTG 2443
Query 2441 TAGGTAGTTTCACTATATTGATTCTACTAAAATATGATTTACCATTA--A-TATTTATAT 2497
|||||||||||||||||||||||||||||||||||||||||| |||| | |||||||||
Sbjct 2444 TAGGTAGTTTCACTATATTGATTCTACTAAAATATGATTTACGATTATTAATATTTATAT 2503
Query 2498 AGACGAGAGTTTTTCTTTTTCTC 2520
||||||||||||||||||| |||
Sbjct 2504 AGACGAGAGTTTTTCTTTTCCTC 2526
> AT3G14790.1 | Symbols: RHM3, ATRHM3 | rhamnose biosynthesis 3
| chr3:4964155-4967075 FORWARD LENGTH=2348
Length=2348
Score = 1940 bits (1050), Expect = 0.0
Identities = 1709/2023 (84%), Gaps = 61/2023 (3%)
Strand=Plus/Plus
Query 316 CTACGTATAAGCCAAAGAACATTCTCATTACTGGAGCTGCTGGATTCATTGCTTCTCATG 375
|||| |||||||| |||||||| ||||| ||||| |||||||||||||| || |||||||
Sbjct 158 CTACATATAAGCCTAAGAACATCCTCATCACTGGGGCTGCTGGATTCATAGCCTCTCATG 217
Query 376 TTGCCAACAGATTAATCCGTAGCTATCCTGATTACAAGATCGTTGTG-TTGGACAAGCTT 434
|||| |||||| || | || ||||| ||||| ||||| || |||||| || |||||||||
Sbjct 218 TTGCTAACAGACTAGTTCGCAGCTACCCTGACTACAAAATTGTTGTGCTT-GACAAGCTT 276
Query 435 GATTACTGTTC-AGATCTGAAGAATCTTGATCCTTCAT-TTTCTTCACCAAACTTCAAGT 492
||||||||||| | |||||||||| ||| ||||||| | || || || ||||||||||
Sbjct 277 GATTACTGTTCTA-ATCTGAAGAACCTTAATCCTTC-TAAATCCTCTCCCAACTTCAAGT 334
Query 493 TTGTCAAAGGAGATATCGCTAGTGATGATCTCGTTAACTACCTTCTCATTACTGAA-AAC 551
|||| |||||||||||||| |||| ||||||||| |||||||||||||| |||||| ||
Sbjct 335 TTGTGAAAGGAGATATCGCCAGTGCTGATCTCGTCAACTACCTTCTCATCACTGAAGAA- 393
Query 552 ATTGATACGATAATGCATTTTGCTGCTCAAACTCATGTTGATAACTCTTTTGGTAATAGC 611
|| || || || ||||| |||||||||||||| |||||||| || ||||| |||||||||
Sbjct 394 ATCGACACCATTATGCACTTTGCTGCTCAAACCCATGTTGACAATTCTTTCGGTAATAGC 453
Query 612 TTTGAGTTTACCAAGAACAATATCTATGGTACTCATGTTCTTTTGGAAGCCTGTAAAGTT 671
||||||||||||||||||||||| |||||||| ||||| ||||||||||| ||||||||
Sbjct 454 TTTGAGTTTACCAAGAACAATATTTATGGTACCCATGTCCTTTTGGAAGCTTGTAAAGTC 513
Query 672 ACAGGACAGATCAGGAGGTTTATCCATGTGAGTACCGATGAAGTCTATGGAGAAACCGAT 731
|| || |||||||||||||| |||||||||||||| ||||| ||||||||||| || |||
Sbjct 514 ACTGGCCAGATCAGGAGGTTCATCCATGTGAGTACTGATGAGGTCTATGGAGAGACTGAT 573
Query 732 GAGGATGCTGCTGTAGGAAACCATGAAGCTTCACAGCT-CTTACCCA-CGAATCCCTACT 789
||||||||| | || || || || || ||||| ||| | || |||| | ||||| ||||
Sbjct 574 GAGGATGCTTCAGTGGGTAATCACGAGGCTTCTCAGTTGCT--CCCAACTAATCCATACT 631
Query 790 CTGCCACTAAGGCTGGTGCTGAGATGCTTGTGATGGCTTATGGTAGATCATATGGATTGC 849
| |||||||| ||||| |||||||||||||| ||||| ||||||||||||||||| ||||
Sbjct 632 CCGCCACTAAAGCTGGAGCTGAGATGCTTGTCATGGCATATGGTAGATCATATGGGTTGC 691
Query 850 CTGTTATTACCACTCGCGGGAACAATGTTTATGGGCCTAACCAGTTTCCTGAGAAAAT-G 908
| ||||| || ||||||||||||||||||||||| ||||||||||||||||| ||| | |
Sbjct 692 CGGTTATAACAACTCGCGGGAACAATGTTTATGGTCCTAACCAGTTTCCTGA-AAAGTTG 750
Query 909 ATTCCTAAGTTCATCTTGTTGGCTATGAGTGGGAAGCCGCTTCCCA-TCCATGGAGATGG 967
||||||||||||||| | ||||| |||| ||||||||| || |||| |||| ||||||||
Sbjct 751 ATTCCTAAGTTCATCCTCTTGGCCATGAATGGGAAGCCTCT-CCCAATCCACGGAGATGG 809
Query 968 ATCTAATGTCCGGAGTTA-CTTGTACTGTGAAGACGTTGCTGAGGCTTTTGAGGTTGTTC 1026
||||||||| | ||||| || ||||| ||||| ||||||||||| |||||||||||||
Sbjct 810 ATCTAATGTGAGAAGTTATCTC-TACTGCGAAGATGTTGCTGAGGCATTTGAGGTTGTTC 868
Query 1027 TTCACAAAGGAGAAATCGGCCATGTCTACAATATCGGTACAAAGAGAGAAAGGAGAGTGA 1086
|||||||||| ||| | ||||||||||||||| || |||| |||||||||||||||||
Sbjct 869 TTCACAAAGGGGAAGTTAACCATGTCTACAATATAGGGACAACGAGAGAAAGGAGAGTGA 928
Query 1087 TCGATGTGGCTAGA-GACATCTGCAAACT-TTTCGGGAAAGACCCTGAGTCAAGCATTCA 1144
| |||||||||| | |||||| | ||||| ||| |||| ||||||||| || | ||||||
Sbjct 929 TTGATGTGGCTA-ATGACATCAGTAAACTCTTT-GGGATAGACCCTGACTCCACCATTCA 986
Query 1145 GTTTGTTGAGAACCGACCCTTTAATGATCAAAGGTACTTCCTTGATGATCAGAAGCTGAA 1204
|| ||| || ||||| || || ||||| || ||||||||||| ||||| |||||||||||
Sbjct 987 GTATGTGGAAAACCGGCCATTCAATGACCAGAGGTACTTCCTCGATGACCAGAAGCTGAA 1046
Query 1205 GAAATTGGGATGGCAAGAGCGAACAACAT-GGGAAGATGGACTGAAGAAGACAATGGACT 1263
|||||| |||||| |||||||| | || ||||||| ||||||| |||||||||||| |
Sbjct 1047 GAAATTAGGATGGTGTGAGCGAACCA-ATTGGGAAGAAGGACTGAGGAAGACAATGGAAT 1105
Query 1264 GGTACACTCAGAATCCTGAGTGGTGGGGTGATGTTTCTGGAGCTTTGCTTCCTCATCCAA 1323
|||| ||| |||| |||||||||||||| ||||||||||||||| ||||||||||||||
Sbjct 1106 GGTATACTGAGAACCCTGAGTGGTGGGGCGATGTTTCTGGAGCTCTGCTTCCTCATCCAC 1165
Query 1324 GAATGCTT-ATGATGCCCGGTGGAA-GACTTTCTGATGGATCT-AGTGAGAAGAAAGACG 1380
| ||| || ||||||||||||| | ||| |||||||| ||| | ||| | || ||
Sbjct 1166 GGATG-TTGATGATGCCCGGTG-ACCGACACTCTGATGGCTCTGAC-GAGCACAA-GAA- 1220
Query 1381 CTGCA-A-GCAACACGGTCCAGACATTTACGGTTGTAACACCTA--AGGG-TGGTGGTTC 1435
|||| | | | | || ||||||| ||||| || || || | | || |||| ||||
Sbjct 1221 -TGCAGATGGTA-A---TC-AGACATTCACGGTGGTTACTCCCACCAAGGCTGGTTGTTC 1274
Query 1436 TGGTGACAAA-GCTTCGTTGAAGTTTTTGATCTATGGTAAGACCGGTTGGCTTGGTGGTC 1494
|| |||||| | | | |||||||| | |||||||| ||||| || ||||| |||||||
Sbjct 1275 CGGAGACAAAAGATCC-TTGAAGTTCCTCATCTATGGGAAGACTGGGTGGCTCGGTGGTC 1333
Query 1495 TTCTAGGGAAA-CTATGTGAGAAGCAAGGGATTACATATGAGTATGGGAAAGGACGTTTG 1553
|||| |||||| ||||||||||| ||||||||| | || |||||||| |||||| | |
Sbjct 1334 TTCT-GGGAAAACTATGTGAGAAACAAGGGATTCCTTACGAGTATGGAAAAGGAAGACTA 1392
Query 1554 GAGGATAGAGCTTCTCTTGTGGCGGATATTCGTAGCATCAAACCTACTCATGTCTTTAAT 1613
||||||||||||||||| | || |||||||| ||||||||||| | ||||||||| ||
Sbjct 1393 GAGGATAGAGCTTCTCTCATCGCAGATATTCGCAGCATCAAACCAAGTCATGTCTTCAAC 1452
Query 1614 GCTGCTGGTTTAACTGGCAGACCCAACGTTGACTGGTGTGAATCTCACAAACCAGAGACC 1673
|| |||||||||||||| |||||||| |||||||||||||||||||||||| | || |||
Sbjct 1453 GCCGCTGGTTTAACTGGGAGACCCAATGTTGACTGGTGTGAATCTCACAAAACTGAAACC 1512
Query 1674 ATTCGCGTAAATGTCGCTGGTACTTTGACTCTAGCTGATGTTTGCAGAGAGAATGATCTC 1733
|| || || || || ||||| ||||||||||| || |||||||||||||||||||||||
Sbjct 1513 ATCCGAGTCAACGTTGCTGGAACTTTGACTCTTGCAGATGTTTGCAGAGAGAATGATCTG 1572
Query 1734 TTGATGATGAACTTTGCCACCGGTTGCATCTTTGAGTATGATGCTGCACATCCTGAGGGT 1793
|||||||||||||||||||| ||||| || || |||||||| ||||||||||| || |||
Sbjct 1573 TTGATGATGAACTTTGCCACTGGTTGTATATTCGAGTATGACGCTGCACATCCAGAAGGT 1632
Query 1794 TC-GGGTATAGGTTTCAAGGAAGAAGACAAGCCAAATTTCTTTGGTTCTTTCTACTCGAA 1852
|| ||| || ||||| ||||||||||| || || |||||| ||||||||||||||| ||
Sbjct 1633 TCAGGG-ATTGGTTTTAAGGAAGAAGATAAACCGAATTTCACTGGTTCTTTCTACTCAAA 1691
Query 1853 AACCAAAGCCA-TGGTTGAGGAGCT-CTTGAGAGAATATGACAATGTATGTACCTTGAGA 1910
||| |||| || |||| || ||||| || ||||||| |||||| ||||| |||||||||
Sbjct 1692 AAC-AAAGGCAATGGTGGAAGAGCTTCTA-AGAGAATTTGACAACGTATGCACCTTGAGA 1749
Query 1911 GTCCGGATGCCAATCTCCTCAGACCTAAACAACCCAAGAAACTTCATCACGAAGATCTCA 1970
|| |||||||||||||| || ||| |||| ||||| ||||||||||||||||||||||
Sbjct 1750 GTGCGGATGCCAATCTCATCTGACTTAAATAACCCGCGAAACTTCATCACGAAGATCTCG 1809
Query 1971 CGCTACAACAAAGTGGTGGACATCCCGAACAGCATGACCATACTGGACGAGCTTCTC-CC 2029
|| ||||||||||||||| |||| || ||||||||||||||||| || || || || ||
Sbjct 1810 CGTTACAACAAAGTGGTGAACATTCCAAACAGCATGACCATACTAGATGAACT-CTTACC 1868
Query 2030 GATCTCCATCGAGATGGCGAAGAGAAACCTAAGAGGGA-TATGGAACTTCACCAACCCAG 2088
||||| ||||||||||||||||| |||||||| |||| |||||||||||||||| ||||
Sbjct 1869 AATCTCGATCGAGATGGCGAAGAGGAACCTAAG-GGGAATATGGAACTTCACCAATCCAG 1927
Query 2089 GGGTGGTGAGCCACAACGAGATACTGGAGATGTACAAGAATTACATCGAGCCAGGTTTTA 2148
| ||||||||||||||||||||| | ||||||||||||| |||||||||||| | ||| |
Sbjct 1928 GAGTGGTGAGCCACAACGAGATATTAGAGATGTACAAGAGTTACATCGAGCCTGATTTCA 1987
Query 2149 AATGGTCCAACTTTACATT-GGAAGAACAAGCAAAGGTCATTGTTGCTGCGCGAAGCAAC 2207
||||||||||||| | ||| ||||||||| || ||||||||||||||| | || ||||||
Sbjct 1988 AATGGTCCAACTTCA-ATTTGGAAGAACAGGCTAAGGTCATTGTTGCTCCACGGAGCAAC 2046
Query 2208 AACGAAATGGATGGAT-CTAAACTAAGCAAGGAGTTCCCAGAGATGCTACCCATCAAAGA 2266
||||| |||||||| | | || || ||||||||||| ||||||||||| ||||||||||
Sbjct 2047 AACGAGATGGATGG-TGCCAAGCTCAGCAAGGAGTTTCCAGAGATGCTTTCCATCAAAGA 2105
Query 2267 GTCACTGATCAAATACGTCTTTGAACCAAACAAGAGAACCTAA 2309
|| |||||||||||||||| ||||| ||||||||||| |||
Sbjct 2106 TTCGTTGATCAAATACGTCTTCGAACCTAACAAGAGAACGTAA 2148
> AT1G78570.1 | Symbols: RHM1, ROL1, ATRHM1 | rhamnose biosynthesis
1 | chr1:29549649-29552438 FORWARD LENGTH=2463
Length=2463
Score = 985 bits (533), Expect = 0.0
Identities = 869/1030 (84%), Gaps = 28/1030 (3%)
Strand=Plus/Plus
Query 330 AAGAACATTCTCATTACTGGAGCTGCTGGATTCATTGCTTCTCATGTTGCCAACAGATTA 389
|||||||||||||| || ||||||||||| |||||||| |||||||| ||||||||| |
Sbjct 241 AAGAACATTCTCATCACCGGAGCTGCTGGTTTCATTGCGTCTCATGTCGCCAACAGACTC 300
Query 390 ATCCGTAGCTATCCTGATTACAAGATCGTTGTG-TTGGACAAGCTTGATTACTGTTCAGA 448
|| || ||||||||||||||||| ||||||||| || ||||||||||||||||||||| |
Sbjct 301 ATACGAAGCTATCCTGATTACAAAATCGTTGTGCTT-GACAAGCTTGATTACTGTTCAAA 359
Query 449 TCTGAAGAATCTTGATCCTTCATTTTC-TTCACCAAACTTCAAGTTTGTCAAAGGAGATA 507
||| |||||||| ||||||| | | || || |||||||||||||||||||| ||||
Sbjct 360 TCTCAAGAATCTCAATCCTTC-TAAGCACTCTCCGAACTTCAAGTTTGTCAAAGGTGATA 418
Query 508 TCGCTAGTGATGATC-TCGTTAACT-ACCTTCTCATTACTGAAAACATTGATACGATAAT 565
||||||||| ||| | | || || | | |||||||| |||||| ||||| || || ||
Sbjct 419 TCGCTAGTGCTGA-CTTGGTGAA-TCATCTTCTCATCACTGAAGGTATTGACACCATCAT 476
Query 566 GCATTTTGCTGCTCAAACTCATGTTGATAACTCTTTTGGTAATAGCTTT-GAGTTTACCA 624
|||||| |||||||| ||||| || || || || || ||||| || ||| |||||||| |
Sbjct 477 GCATTTCGCTGCTCAGACTCACGTCGACAATTCCTTCGGTAACAG-TTTCGAGTTTACTA 535
Query 625 AGAACAATATCTATGGTACTCATGTTCTT-TTGGAAGCCTGTAAAGTTACAGGACAGATC 683
|||| ||||||||||| |||||||| ||| || || || ||||||||||| || |||||
Sbjct 536 AGAATAATATCTATGGAACTCATGTCCTTCTT-GAGGCTTGTAAAGTTACTGGTCAGATT 594
Query 684 AGGAGGTTTATCCATGTGAGTACCGATGAAGTCTATGGAGAAACCGATGAGGATGCTGC- 742
||||||||||| ||||| ||||| |||||||| ||||| ||||| |||||||||||| |
Sbjct 595 AGGAGGTTTATTCATGTTAGTACTGATGAAGTTTATGGTGAAACTGATGAGGATGCT-CT 653
Query 743 TGTAGGAAACCATGAAGCTTCACAGCT-CTTACCCACGAATCCCTACTCTGCCACTAAGG 801
||| || |||||||| ||||| ||||| ||| || |||||||| ||||||||||| || |
Sbjct 654 TGTTGGTAACCATGAGGCTTCTCAGCTGCTT-CCGACGAATCCTTACTCTGCCACGAAAG 712
Query 802 CTGGTGCTGAGATGCTTGTGATGGCTTATGGTAGATCATATGGATTGCCTGTTATTACCA 861
||||||||||||||||||| ||||||||||||||||| ||||| ||||||||||||||||
Sbjct 713 CTGGTGCTGAGATGCTTGTTATGGCTTATGGTAGATCTTATGGTTTGCCTGTTATTACCA 772
Query 862 CTCGCGGGAACAATGTTTATGGGCCTAACCAGTTTCCTGAGAAAATGATTCCTAAGTTCA 921
|||| ||||| || || ||||| || || |||||||||||||| |||||||||||||||
Sbjct 773 CTCGTGGGAATAACGTCTATGGACCGAATCAGTTTCCTGAGAAGTTGATTCCTAAGTTCA 832
Query 922 TCTTGTTGGCTATGAGTGGGAAGCCGCTTCCCATCCATGGAGATGGATCTAATGTCCGGA 981
| ||| |||| ||||| ||| || |||||||| |||||||||||||| |||||| |||
Sbjct 833 TTTTGCTGGCAATGAGAGGGCAGGTTCTTCCCATTCATGGAGATGGATCAAATGTCAGGA 892
Query 982 GTTACTTGTACTGTGAAGACGTTGCTGAGGCTTTTGAGGTTGTTCTTCACAAAGGAGAAA 1041
| ||| | ||||||||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct 893 GCTACCTCTACTGTGAAGACGTTGCTGAGGCTTTTGAAGTTGTTCTTCACAAGGGAGAAG 952
Query 1042 TCGGCCATGTCTACAATATCGGTACAAAGAGAGAA-AGGAGAGTGA-TCGATGTGGCTAG 1099
| |||||||| |||||||| || || |||| || | |||||||||| | ||||| || |
Sbjct 953 TTGGCCATGTTTACAATATTGGGACGAAGA-AGGAGAGGAGAGTGAAT-GATGTTGCCAA 1010
Query 1100 AGACATCTGCAAACTTTTCGGGAAAGACCCTGAGTC-AAGCATTCA-GTTTGTTGAGAAC 1157
||||||||||||||| ||| | ||||||||| | || ||| || |||||| || |||
Sbjct 1011 AGACATCTGCAAACTCTTCAACATGGACCCTGAGGCGAA-CAT-CAAGTTTGTCGACAAC 1068
Query 1158 CGACCCTTTAATGATCAAAGGTACTTCCTTGATGATCAGAAGCTGAAGAAA-TTGGGATG 1216
|||| ||||| ||||| |||||||||||||| ||||||||||| || ||| ||||||||
Sbjct 1069 AGACCTTTTAACGATCAGAGGTACTTCCTTGACGATCAGAAGCTCAA-AAAGTTGGGATG 1127
Query 1217 G-CAAGAGCGAACAACATGGGAAGATGGACTGAAGAAGACAATGGACTGGTACACTCAGA 1275
| || ||| |||| || |||||||| || ||||||| || ||||| |||||||| ||||
Sbjct 1128 GTCA-GAGAGAACCACGTGGGAAGAAGGGTTGAAGAAAACTATGGATTGGTACACACAGA 1186
Query 1276 ATCCTGAGTGGTGGGGTGATGTTTCTGGAGCTTTGCTTCCTCATCCAAGAATGCTTATGA 1335
| || |||||||||||||||||||||||||| ||||||||||||||||| ||||| ||||
Sbjct 1187 ACCCGGAGTGGTGGGGTGATGTTTCTGGAGCATTGCTTCCTCATCCAAGGATGCTGATGA 1246
Query 1336 TGCCCGGTGG 1345
|||| |||||
Sbjct 1247 TGCCTGGTGG 1256
Score = 608 bits (329), Expect = 7e-173
Identities = 710/890 (80%), Gaps = 42/890 (5%)
Strand=Plus/Plus
Query 1443 AAAG-CTTCGTTGAAGTTTTTGATCTATGGTAAGACCGGTTGGCTTGGTGGTCTTCTAGG 1501
|||| ||||| ||||||| |||| ||||| |||||||| ||| | |||||||| || |
Sbjct 1365 AAAGCCTTCGCTGAAGTTCCTGATATATGGAAAGACCGGATGGATCGGTGGTCTGCT-TG 1423
Query 1502 GAAA-CTATGTGAGAAGCAAGGGATTACATATGAGTATGGGAAAGGACGTTTGGAGGATA 1560
|||| ||||||| |||||||| ||| | || |||||||||||||| || |||||||||
Sbjct 1424 GAAAGATATGTGATAAGCAAGGAATTGCTTACGAGTATGGGAAAGGTCGGTTGGAGGATC 1483
Query 1561 GAGCTTCTCTTGTGGC-GGATATTC-GTAGCATCAAACCTACTCATGTCTTT-AATGCTG 1617
|| |||||||| | || |||||||| | || | || || || ||||| ||| ||| | |
Sbjct 1484 GATCTTCTCTTCT-GCAGGATATTCAG-AGTGTTAAGCCAACCCATGT-TTTCAATTCCG 1540
Query 1618 CTGGTTTAACTGGCAGACCCAACGTTGACTGGTGTGAATCTCACAA-ACCAGAGACCATT 1676
||||| | ||||| |||||||| |||||||||||||| |||||||| ||| ||||| ||
Sbjct 1541 CTGGTGTGACTGGGAGACCCAATGTTGACTGGTGTGAGTCTCACAAGACC-GAGACTATC 1599
Query 1677 CGCGTAAATGTCGCTGGTACTTTGACTCTAGCTGATGTTTGCAGAGAG-AATGATCTCTT 1735
|| | ||||| ||||| || ||||||||||||||||| ||||||||| | || ||| |
Sbjct 1600 CGTGCCAATGTAGCTGGCACATTGACTCTAGCTGATGTCTGCAGAGAGCACGGA-CTCCT 1658
Query 1736 GATGATGAACTTT-GCCACCGGTTGCATCTTTGAGTATGATGCTG-C-A-CATCCTGAGG 1791
|||||||| ||| || || ||||| || || || ||||| | | | | ||||| || |
Sbjct 1659 AATGATGAA-TTTCGCTACTGGTTGTATATTCGAATATGA--C-GACAAGCATCCGGAAG 1714
Query 1792 GTTCGGGTATAGGTTTCAAGGAAGAAGACA-AGCCAAATTTCTTTGGTTCTTTCTACTCG 1850
|||| || || || |||||||| ||||||| | || || ||| ||| ||||||||||||
Sbjct 1715 GTTCAGGAATTGGCTTCAAGGAGGAAGACACA-CCCAACTTCACTGGCTCTTTCTACTCG 1773
Query 1851 AAAACCAAAGCCATGGTTGAGGAGCT-CTTGAGAGAATATGACAATGTATGTACCTTGAG 1909
||||||||||||||||| |||||||| || || || |||||||| ||||| || |||||
Sbjct 1774 AAAACCAAAGCCATGGTCGAGGAGCTGCTAAAG-GAGTATGACAACGTATGCACATTGAG 1832
Query 1910 AGTCCGGATGCCAATCTCCTCAGACCTAAACAACCCAAGAAACTTCATCACGAAGATCTC 1969
|| ||||||| |||||||| || ||||||||||| | ||||||||||| ||||||||
Sbjct 1833 GGTAAGGATGCCGATCTCCTCGGATCTAAACAACCCGCGCAACTTCATCACCAAGATCTC 1892
Query 1970 -ACGCTACAACAAAGTGGTGGACATCCCGAACAGCATGACCATACTGGACGAGCTTCTC- 2027
| | ||||||||||| ||| ||||||| ||||||||||| | |||||||| || |
Sbjct 1893 CAGG-TACAACAAAGTAGTGAACATCCCAAACAGCATGACTGTGTTGGACGAG-TTATTA 1950
Query 2028 CCGATCTCCATCGAGATGGCGAAGAGAAACCT-AAGAGGGATATGGAACTTCACCAACCC 2086
|| |||||||||||||||||||| |||||| | || ||| || ||||||||||| |||||
Sbjct 1951 CCAATCTCCATCGAGATGGCGAAAAGAAACTTGAA-AGGAATCTGGAACTTCACAAACCC 2009
Query 2087 AGGGGTGGTGAGCCACAACGAGATACTGGAGATGTACA-AGAATTACATCGAGCCAGGTT 2145
||| |||||||||||||||||||| || |||||||||| ||| | ||||| | || | |
Sbjct 2010 AGGTGTGGTGAGCCACAACGAGATCCTAGAGATGTACAGAGACT-ACATCAACCCTGAAT 2068
Query 2146 TTAAATGGTCCAACTTTACATTGGAAGAACAAGC-AAAGGTCATTGTTGCTGCGCGAAGC 2204
| |||||| | ||||| ||||| || || ||||| |||| ||||||| ||| | |||||
Sbjct 2069 TCAAATGGGCAAACTTCACATTAGAGGAGCAAGCTAAAG-TCATTGTGGCTCCAAGAAGC 2127
Query 2205 AACAACGAAATGGATGGATCTAAACT-AAGCAAGGAGTTCCCAGAGATGCTACCC-ATCA 2262
|||||||| ||||||| || || || ||| ||| ||||||| ||| | || | | ||||
Sbjct 2128 AACAACGAGATGGATGCTTCCAAGCTCAAGAAAG-AGTTCCCTGAGCTACT-CTCTATCA 2185
Query 2263 AAGAGTCACTGATCAAATACGTCTTT-GAACCAAACAAGAGAACCT-AAG 2310
| ||||| ||||| || || | | | | |||||||||| ||||| |||
Sbjct 2186 AGGAGTCTCTGATTAAGTATG-CATACGGGCCAAACAAGAAAACCTGAAG 2234
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 125066188899
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5