BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg474480
Length=929
Score E
Sequences producing significant alignments: (Bits) Value
AT1G53520.1 | Symbols: | Chalcone-flavanone isomerase family p... 1441 0.0
> AT1G53520.1 | Symbols: | Chalcone-flavanone isomerase family
protein | chr1:19976415-19977955 REVERSE LENGTH=974
Length=974
Score = 1441 bits (780), Expect = 0.0
Identities = 883/932 (95%), Gaps = 10/932 (1%)
Strand=Plus/Plus
Query 1 AAAGTTCGAACACTTAGGATTTATCGCCGGAGTTTTTGAACATGGACGGGATTCTTGCAG 60
|||||||| ||||||||||||||||||||||| ||||||||||||| |||||||||||||
Sbjct 1 AAAGTTCGGACACTTAGGATTTATCGCCGGAG-TTTTGAACATGGATGGGATTCTTGCAG 59
Query 61 CTGTTCCAT-TGGCAATGTGTGTCTCTCTACGCAGTTCTTGTCGGAATCGGGATAATGCT 119
||||||||| | ||| |||||||||||||||||| |||||||||||||| ||||||||||
Sbjct 60 CTGTTCCATCT-GCAGTGTGTGTCTCTCTACGCATTTCTTGTCGGAATCTGGATAATGCT 118
Query 120 GAATCCATATATCATTTTCCCGGCAAATCCTCGAATCGAGTTTCAGTGCTTCAAACTGGG 179
|||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 119 GAATCCATCTATCATTTTCCCGGCAAATCCTTGAATCGAGTTTCAGTGCTTCAAACTGGG 178
Query 180 AACTACGTTTCTTC-TCAAAGATGCAATTCGTTGCTTAAAAAGCGACATTGCAGTGAAAT 238
|||||||| || || | |||| ||||||||||||||||||| |||||||| |||||||
Sbjct 179 AACTACGTCTC-TCGT-AAAG--GCAATTCGTTGCTTAAAAACCGACATTGTGGTGAAAT 234
Query 239 TTCCCGTGTGATCGTAAAATCCGCCGCTTCTTCAGTTGGAAATGTAGACGAGTACGCTGA 298
|||||||||||||||||||||||||||||||||||||||||||| ||| || ||||||||
Sbjct 235 TTCCCGTGTGATCGTAAAATCCGCCGCTTCTTCAGTTGGAAATGCAGAGGACTACGCTGA 294
Query 299 AGAAACGGCTACAAGTGTAAGGTTTCAGAGATCAGTGACATTACCTGGTTGTTCTAGCCC 358
|||||||||||||||||||| |||| ||||||||||||||||||| ||||||||||||||
Sbjct 295 AGAAACGGCTACAAGTGTAAAGTTTAAGAGATCAGTGACATTACCGGGTTGTTCTAGCCC 354
Query 359 GTTGTCTTTGCTTGGCACTGGGTTTAGGGAGAAAAAGTTTGCTATCATCGGTGTCAAAGT 418
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 355 GTTGTCTTTGCTCGGCACTGGGTTTAGGGAGAAAAAGTTTGCTATCATCGGTGTCAAAGT 414
Query 419 CTATGCTGCGGGTTATTATGTGAATGAATCTATCTTGAGCGGGTTAAGCGCTTGGAAAGG 478
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 415 CTATGCTGCGGGTTATTATGTGAATGAATCTATCTTGAGCGGGTTAAGCGCTTGGACAGG 474
Query 479 GAGGTCTGCTGATGAGATCCAGAGAGATTCATCACTGTTTAGTT-CCATTTTTCAAGCTC 537
| | ||||||||||||||||| |||||||||||||||||| ||| ||||||| |||||||
Sbjct 475 GCGATCTGCTGATGAGATCCAAAGAGATTCATCACTGTTT-GTTTCCATTTTCCAAGCTC 533
Query 538 AAGCAGAGAAATCGTTGCAGATTGTTCTTGTCAGAGATGTTGATGGTAAAACCTTCTGGG 597
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 534 AAGCAGAGAAATCGTTGCAGATTGTTCTTGTGAGAGATGTTGATGGTAAAACCTTCTGGG 593
Query 598 ATGCTTTGGATGAAGCCATTTCACCGAGAATCAAATCTCCATCTTCTGATGATACAACCG 657
|||| |||||||||||||||||||||||||||||||||||||||||||| |||||||| |
Sbjct 594 ATGCATTGGATGAAGCCATTTCACCGAGAATCAAATCTCCATCTTCTGAGGATACAACTG 653
Query 658 CCCTCTCTACATTCCGCGGGATCTTCCAAAACAGACCTCTCAACAAAGGAAGTGTCATAC 717
| |||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||
Sbjct 654 CTCTCTCTACATTCCGTGGGATTTTCCAAAACAGACCTCTCAACAAAGGAAGTGTCATAC 713
Query 718 TCTTGACTTGGATCAACACTTCTAAAATGCTTGTTTCTGTTTCTTCGGGAGGATTGCCAA 777
||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| ||||
Sbjct 714 TCTTGACTTGGATCAACACTTCTAATATGCTTGTTTCTGTTTCGTCGGGAGGATTACCAA 773
Query 778 CGGATGTGGATGCAACAATCGAGTCAGGTAATGTTACATCTGCTCTATTTGATGTGTTCT 837
|| ||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||
Sbjct 774 CGAATGTGGATGCAACGATCGAGTCAGGTAATGTTACATCTGCTCTGTTTGATGTGTTCT 833
Query 838 TTGGGGATTCTCCAGTTTCTCCTACATTGAAATCCTCAGTAGCTAACCAATTAGCTATGA 897
|||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||
Sbjct 834 TTGGGGATTCTCCAGTTTCTCCTACATTGAAATCCTCAGTGGCTAACCAATTAGCCATGA 893
Query 898 CCCTTGTGTAAAAGTAAAGACCATGTTGTAAT 929
|||| |||||||||||||||||||||||||||
Sbjct 894 CCCTAGTGTAAAAGTAAAGACCATGTTGTAAT 925
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45411668888
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5