BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg474488
Length=2278
Score E
Sequences producing significant alignments: (Bits) Value
AT1G53570.1 | Symbols: MAP3KA, MAPKKK3 | mitogen-activated prot... 3413 0.0
AT1G63700.1 | Symbols: EMB71, YDA, MAPKKK4 | Protein kinase sup... 154 4e-36
> AT1G53570.1 | Symbols: MAP3KA, MAPKKK3 | mitogen-activated protein
kinase kinase kinase 3 | chr1:19987191-19991113 FORWARD
LENGTH=2410
Length=2410
Score = 3413 bits (1848), Expect = 0.0
Identities = 2168/2315 (94%), Gaps = 51/2315 (2%)
Strand=Plus/Plus
Query 1 GATGAAATCTTCATCTTTCGTATCTCTCTTCCTTCTCATGCCCT-AATTTCATCTTCTCT 59
|||||||||||||||||||||||||||| ||||||||||||||| |||||||||| ||||
Sbjct 76 GATGAAATCTTCATCTTTCGTATCTCTCCTCCTTCTCATGCCCTAAATTTCATCTCCTCT 135
Query 60 C-TGTCATCGATTCTGTTAAAAATCTCACCTTTCAATTCAAAAATCCTTCCAGAGTTTTG 118
| ||| || |||||||||||||||||||||||||||||||||| |||||| | |||||
Sbjct 136 CTTGT-ATTGATTCTGTTAAAAATCTCACCTTTCAATTCAAAACCCCTTCC--ATTTTTG 192
Query 119 TG----ATATGCCTACTTGGTGGGGAAGAAAGTCCTGCAAGAACAAGGACGATAATCACA 174
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 193 TGATTAATATGCCTACTTGGTGGGGAAGAAAGTCCTGCAAGAACAAGGACGATAATCACA 252
Query 175 AAGGAATTATCTCCACAGATAGAGATATCAAGA-----GCTG-TGTTGTTGATCCTCCTC 228
|||||| ||||||||||||||||||||||||| |||| |||||||||||||||||
Sbjct 253 GAGGAATCATCTCCACAGATAGAGATATCAAGAGCTCTGCTGTTGTTGTTGATCCTCCTC 312
Query 229 TTACTCCTACTCGTGTTGGTACACCTCGTTGTAGTCGTGAATTCGCCGGAGCTTCTTCTG 288
| ||||||||||||| ||||||||||||||| |||||||||||||| |||||||||||||
Sbjct 313 TCACTCCTACTCGTGGTGGTACACCTCGTTGCAGTCGTGAATTCGCTGGAGCTTCTTCTG 372
Query 289 ------C----TTT--CTCTGATTCTACCGAGAAGAAAGGTCATCCTCTTCCTCGTCCTT 336
| ||| ||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 373 CTTTCTCTGGTTTTGACTCTGATTCTACCGAGAAGAAAGGTCACCCTCTTCCTCGTCCTT 432
Query 337 TACTCTCTCCTGTTTCGATCCATCATCAAGATCATGTAAGCGGATCCACTTCTGGATCTA 396
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 433 TGCTCTCTCCTGTTTCGATCCATCATCAAGATCATGTAAGCGGATCCACTTCTGGATCTA 492
Query 397 CCTCTGTTTCTAGCGTTAGCTCTTCTGGATCAGCTGATGATCAGAGTCAACTTGTTGCTT 456
| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 493 CATCTGTTTCTAGCGTTAGCTCATCTGGATCAGCTGATGATCAGAGTCAACTTGTTGCTT 552
Query 457 CTAGGGGTCATGGTGATGTGAAATTCAATGTAGCAGCAGCACCACGTAGCCCAGAGAGAG 516
||||||||| ||||||||||||||||||||||||||||||||||||||| || |||||||
Sbjct 553 CTAGGGGTCGTGGTGATGTGAAATTCAATGTAGCAGCAGCACCACGTAGTCCTGAGAGAG 612
Query 517 CTTCTCCAAAGGTAGCTACTGCTACTATTAGGCCCACGTCTCCACTGCATCAGCGATTGT 576
||||||||||| ||||||| ||||| ||||||||||||||||| ||||||||| ||||
Sbjct 613 TTTCTCCAAAGGCAGCTACTATTACTACTAGGCCCACGTCTCCACGGCATCAGCGTTTGT 672
Query 577 CTGGAGTTGTGAGCTTAGAGTCTTCTATAGGGAGGAATGATGATGGAAGGTCTTCTTCTG 636
||||||||||||||||||||||||||| |||||||||||||||||||||||| || ||||
Sbjct 673 CTGGAGTTGTGAGCTTAGAGTCTTCTACAGGGAGGAATGATGATGGAAGGTCCTCCTCTG 732
Query 637 AGTGTCACCCTTTGCCTCGACCACCTACTTCTCCTACAAGCCCTTCTGCTGTGCATGGTT 696
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 733 AGTGTCATCCTTTGCCTCGACCACCTACTTCTCCTACAAGCCCTTCTGCTGTGCATGGTT 792
Query 697 CCTGGATTGGAGGAGGCTACGAGACAACCTCTCCTTCGGGGTTTTCCAAGTGGAAAAAAG 756
|| |||||||||||||||||||| |||||||||||||||||||||| |||||||||||
Sbjct 793 CCAGGATTGGAGGAGGCTACGAG---ACCTCTCCTTCGGGGTTTTCCACGTGGAAAAAAG 849
Query 757 GGAAATTTCTTGGGAGTGGCACCTTTGGCCAAGTCTATCTTGGGTTCAACAGTGAGAAAG 816
|||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||
Sbjct 850 GGAAATTTCTTGGGAGTGGCACCTTTGGTCAAGTCTATCTTGGTTTCAACAGTGAGAAAG 909
Query 817 GAAAAATGTGTGCTATTAAAGAGGTGAAGGTCATTTCTGACGACCAAACGTCAAAAGAAT 876
| ||||||||||||||||||||||| ||||||||||||||||| ||||| ||||||||||
Sbjct 910 GGAAAATGTGTGCTATTAAAGAGGTCAAGGTCATTTCTGACGATCAAACATCAAAAGAAT 969
Query 877 GTCTGAAGCAACTAAATCAGGAGATAAATTTGCTTAACCAGCTTTGTCATCCGAATATCG 936
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 970 GTCTGAAGCAACTAAATCAGGAGATAAATTTGCTTAACCAGCTTTGTCATCCGAATATTG 1029
Query 937 TCCAGTATTACGGAAGTGAACTGAGTGAAGAAACCTTGTCCGTCTACTTGGAGTATGTGT 996
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1030 TCCAGTATTACGGAAGTGAACTGAGTGAAGAAACCTTGTCCGTCTACTTGGAGTACGTGT 1089
Query 997 CAGGTGGTTCAATCCATAAACTACTTAAAGAATATGGTTCTTTCACTGAACCTGTTATCC 1056
|||||||||||||||||||||||||||| || |||||||||||||||||||| |||||||
Sbjct 1090 CAGGTGGTTCAATCCATAAACTACTTAAGGATTATGGTTCTTTCACTGAACCCGTTATCC 1149
Query 1057 AAAACTACACGCGGCAGATTCTCGCTGGGCTTGCCTATTTACATGGAAGAAATACAGTAC 1116
|||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||
Sbjct 1150 AAAACTACACGCGGCAGATTCTTGCTGGGCTTGCCTATTTACATGGACGAAATACAGTAC 1209
Query 1117 ATAGGGACATCAAAGGAGCAAATATATTAGTGGATCCGAATGGTGAAATCAAGTTGGCAG 1176
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1210 ATAGGGACATCAAAGGAGCAAATATATTAGTGGATCCGAATGGTGAAATCAAGTTGGCAG 1269
Query 1177 ACTTTGGGATGGCCAGACATGTAGCAGCCTTTTCTACTATGCTTTCTTTCAAAGGGAGTC 1236
||||||||||||||| ||||||| ||||||||||||||||||||||||| ||||||||||
Sbjct 1270 ACTTTGGGATGGCCAAACATGTAACAGCCTTTTCTACTATGCTTTCTTTTAAAGGGAGTC 1329
Query 1237 CTTACTGGATGGCACCCGAGGTTGTGATGAGCCAAAATGGTTACACTCATGCAGTCGATA 1296
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1330 CTTACTGGATGGCACCCGAGGTTGTGATGAGCCAAAATGGCTACACTCATGCAGTCGATA 1389
Query 1297 TCTGGAGTTTGGGTTGTACTATTCTCGAAATGGCAACATCAAAGCCACCTTGGAGCCAGT 1356
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1390 TCTGGAGTTTGGGTTGTACTATTCTGGAAATGGCAACATCAAAGCCACCTTGGAGCCAGT 1449
Query 1357 TTGAAGGGGTTGCTGCGATTTTCAAAATCGGAAACAGTAAAGACACCCCGGAAATACCTG 1416
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1450 TTGAAGGGGTTGCTGCGATTTTCAAAATCGGAAACAGTAAAGACACCCCGGAAATACCTG 1509
Query 1417 ATCACCTTTCAAACGATGCAAAGAATTTTATAAGGCTTTGTCTGCAACGAAATCCGACAG 1476
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1510 ATCACCTTTCAAATGATGCAAAGAATTTTATAAGGCTTTGTCTGCAACGAAATCCGACAG 1569
Query 1477 TACGTCCTACAGCTTGTCAGCTTCTAGAACACCCTTTTCTACGTAATACAACAAGAGTGG 1536
||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1570 TACGTCCTACAGCTTCTCAGCTTCTAGAACACCCTTTTCTACGTAACACAACAAGAGTGG 1629
Query 1537 CTAGTACTAGCATGCCCAAAGA-TACCTCCCCACGTTCCCATGATGGAAGCTTCTCACTG 1595
|||||||||| |||||||||| | || ||||||||||| ||||||||| ||||||||||
Sbjct 1630 CTAGTACTAGTTTGCCCAAAGACTTCC-CCCCACGTTCCTATGATGGAAACTTCTCACTG 1688
Query 1596 C--CA-ACAAGGGAATCCTATCCAGGGAGATTAAGCCATGATAATTACCCAAGACAACCA 1652
| | ||||||||| |||||||||||||| | |||||||||||||| ||| ||| |||
Sbjct 1689 CAGCCTACAAGGGAACCCTATCCAGGGAGACTGAGCCATGATAATTATGCAAAACAGCCA 1748
Query 1653 TTGTCTAGAACTATAAAGAGCCCGAGCAGAGAAAACGTAAGAGCTATCACATCCTTGCCA 1712
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1749 TTGTCTAGAACTATAAAGAGCCCGAGCAGAGAAAACGTAAGAGCTATCACATCCTTACCA 1808
Query 1713 GTATCTCCATGTTCAAGCCCTTTACGCCAACTTGGGCCGGCATACAAAAGCTGTTTCCTG 1772
|||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||
Sbjct 1809 GTATCTCCATGTTCAAGCCCTTTACGCCAACTTGGGCCAGCATACAAAAGTTGTTTCCTG 1868
Query 1773 TCACCTCCTCACCCGTCTTACGCATTTCCTGGTCAAGACAGTGGGTACAACTTAGCGGAG 1832
|||||||||||||||||||||||||||||||| |||||||||||||||||| |||| |||
Sbjct 1869 TCACCTCCTCACCCGTCTTACGCATTTCCTGGGCAAGACAGTGGGTACAACCTAGCAGAG 1928
Query 1833 TTTGCTGCAAGCCCTTTCAGGATGAAGAAAGACACAATGATGGAACCAGCTAGTTTCAGG 1892
||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||
Sbjct 1929 TTTGCTGCAAGCCCTTTCAGGATGAAGAAAGACGCAATGATGGAACCATCTAGTTTCAGG 1988
Query 1893 GGTCAAACATCGAATTTTCCCTTGAGATCAAGACTGGTATAGAAATGGAGCAAAGATTGA 1952
||||||| |||||| || ||||||||||||||||| |||||||||||||||||||||
Sbjct 1989 ACTCAAACACCGAATTCACCATTGAGATCAAGACTGGTGTAGAAATGGAGCAAAGATTGA 2048
Query 1953 GAGACCGAAAGCCACATACGATAAACAAGGCCCAAGGACCATGTACAAAACACAGTGTCT 2012
||||| ||||||||||||| ||||||||||||||| ||||||||| |||||| ||||||
Sbjct 2049 GAGACTGAAAGCCACATACTATAAACAAGGCCCAATGACCATGTATAAAACA--GTGTCT 2106
Query 2013 -CCCCTGGTTTTGGCCTTCTCCTTCTCTACACCCTGGGAAATATGAAGTAATTATGATAC 2071
||||| |||||||||||||||||||| |||||| |||||||||||||| | |||| ||
Sbjct 2107 ACCCCTAGTTTTGGCCTTCTCCTTCTCAACACCCAGGGAAATATGAAGT--T-ATGAGAC 2163
Query 2072 CTTAGTTGTGTGTG-G---AGCATCTACTAGAAGTGGAGATTTTTGGAACAAGAAGGAGA 2127
|||||||||||||| | ||||||| |||||||||||||||||||||||||||||||||
Sbjct 2164 CTTAGTTGTGTGTGTGTGGAGCATCTCCTAGAAGTGGAGATTTTTGGAACAAGAAGGAGA 2223
Query 2128 AATTTGGGGG-AAA-CAGAGAGATGTAAAGAGAAACATGAAAATGAATACAAAGATTATA 2185
|||||||||| ||| |||| |||||||||||||||||||||||||||||||||| |||||
Sbjct 2224 AATTTGGGGGGAAAACAGAAAGATGTAAAGAGAAACATGAAAATGAATACAAAGTTTATA 2283
Query 2186 GAGTG--AGAAGTACAAAGATAGTAAGTTGTGTTGTTATACAAAGATAATATTCAACCAT 2243
||||| ||||||| | |||||||||||||||||| | |||||||||||||||||||||
Sbjct 2284 GAGTGTGAGAAGTATA--GATAGTAAGTTGTGTTGTCACACAAAGATAATATTCAACCAT 2341
Query 2244 TTGTTTTCAACCTACCGTGTGAATATACTTTTCAG 2278
||||||||||||||| |||||||||||||||||||
Sbjct 2342 TTGTTTTCAACCTACAGTGTGAATATACTTTTCAG 2376
> AT1G63700.1 | Symbols: EMB71, YDA, MAPKKK4 | Protein kinase superfamily
protein | chr1:23624666-23629112 REVERSE LENGTH=3275
Length=3275
Score = 154 bits (83), Expect = 4e-36
Identities = 393/537 (73%), Gaps = 44/537 (8%)
Strand=Plus/Plus
Query 985 TGGAGTATGTGTCAGGTGGTTCAATCCATAAACTACTTAAAGAATATGGTTC--TTTCAC 1042
|||||||||| || |||||||| ||| ||||||| ||| |||| ||||| | |||
Sbjct 1517 TGGAGTATGTCTCCGGTGGTTCGATCTATAAACTTCTTCAAGAGTATGG-ACAATTT-GG 1574
Query 1043 TGA-ACCTGTTATCCAAAACTACACGCGGCAGATTCTCGCTGGGCTTGCCTATTTACATG 1101
||| | || || | |||||||| | || ||| | | ||||| || ||||| || |
Sbjct 1575 TGAGA-ATGCCATTCGTAACTACACACAACAAATTTTATCAGGGCTCGCATATTTGCACG 1633
Query 1102 -GAAGAAATACAGTACATAGGGACATCAAAGGAGCAAATATATTAGTGGATCCGAATGGT 1160
|| |||||| || ||||||||||||||||||||||||||||| |||||||| ||||
Sbjct 1634 CCAA-AAATACTGTTCATAGGGACATCAAAGGAGCAAATATATTGGTGGATCCTCATGGA 1692
Query 1161 -GAAATCAA-GTTGGCAGACTTTGGGATGGCCAGACATGT-AGCAGC-CTTTTCTACTAT 1216
|| | || |||| | || ||||||||||| | |||| | | | || | | || |
Sbjct 1693 CGAG-TAAAAGTTG-CTGATTTTGGGATGGCAAAACATATTA-CTGCTCAAT-CTGGTC- 1747
Query 1217 GCTTTCT--TTCAAAGGGAGTCCTTACTGGATGGCACCCGAGGTTG-TGATGAGC-CAAA 1272
|||| | ||||| ||||| || || ||||||||||| ||||| | | | || ||||
Sbjct 1748 -CTTTATCATTCAAGGGGAGCCCATATTGGATGGCACCTGAGGT-GATAAAGAATTCAAA 1805
Query 1273 ATGGT--TACACTCATGCAGTCGATATCTGGAGT-TTGGGTTGTACTATTCTCGAAATGG 1329
||| || || | ||| ||||| || |||||| |||| | ||||| || | |||||||
Sbjct 1806 -TGGCAGTA-AC-CTTGCGGTCGACATATGGAGTCTTGGAT-GTACTGTTTTAGAAATGG 1861
Query 1330 CAACATC-AAAGCCACCTTGGAGCCAGTTTGAAGGGGTTGCTGCGATTTTCAAAATCGGA 1388
| ||| | ||| || || |||||||||| |||||||||| |||| || ||||| || |||
Sbjct 1862 CTACAACGAAA-CCTCCATGGAGCCAGTATGAAGGGGTTCCTGCTATGTTCAAGATTGGA 1920
Query 1389 AACAGTAAAGA-CACCCCGGAAATACCTGATCACCTT-TCA-AACGATGCAAAGAATTTT 1445
||||| || || | || | | || |||||||| || || || || | ||| |||||
Sbjct 1921 AACAGCAAGGAGCTTCCAG-ATATCCCTGATCAT-TTATCTGAA-GAGGGGAAGGATTTT 1977
Query 1446 ATAAGGCTTTGTCTGCAACGAAATCC-G-ACAGTACGTCCTACAGCTTG-TCAGCTT 1499
|||| || || ||| |||| || | | | | |||||||||||| | |||||||
Sbjct 1978 GTAAGAAAATGCCTACAAAGAAACCCCGCAAA-T-CGTCCTACAGCT-GCTCAGCTT 2031
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 113051627340
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5