BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg474494

Length=350
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G53625.1 | Symbols:  | unknown protein; Has 29996 Blast hits...   472    1e-132


> AT1G53625.1 | Symbols:  | unknown protein; Has 29996 Blast hits 
to 6987 proteins in 655 species: Archae - 23; Bacteria - 
6686; Metazoa - 10521; Fungi - 1178; Plants - 7439; Viruses 
- 681; Other Eukaryotes - 3468 (source: NCBI BLink). | chr1:20014410-20014923 
REVERSE LENGTH=514
Length=514

 Score =  472 bits (255),  Expect = 1e-132
 Identities = 321/350 (92%), Gaps = 15/350 (4%)
 Strand=Plus/Plus

Query  1    ATGTGTCGAATGTTATGTTGTTGCTTCTGCCGCaagaagaaaaagccgagagatgtgaaa  60
            ||||||||||| |||||||||||||| |||||||||||||||||||||  ||||||||||
Sbjct  110  ATGTGTCGAATTTTATGTTGTTGCTTTTGCCGCAAGAAGAAAAAGCCGCTAGATGTGAAA  169

Query  61   aagggtaaaaagggaaagaaagaTGGAGGCCTTGTTGTTTTGAAGCAGACTAAGCCTAAG  120
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  170  AAGGGTAAAAAGGGAAAGAAAGATGGAGGCCTTGTTGTTTTGAAGCAGACTAAGCCTAAG  229

Query  121  AAGAAGCGTCGCGATGATGTAGGAGCTATAGGAATAGACTCATGTTGCTGTTgtggcggt  180
            ||||||||||| ||||||||||||||| ||  ||||||||||||||||||||||||||||
Sbjct  230  AAGAAGCGTCGTGATGATGTAGGAGCTGTATCAATAGACTCATGTTGCTGTTGTGGCGGT  289

Query  181  ggtgatggcggtggagatggtggcggagacggtggtggcggcggaggatgtggaggtggt  240
            |||||||| ||||||||||||||||||||||||||||| ||   ||| |||||   ||||
Sbjct  290  GGTGATGGTGGTGGAGATGGTGGCGGAGACGGTGGTGGTGG---AGGCTGTGG---TGGT  343

Query  241  ggtggaggcggtggatgtggaggtggtggtggaggcggtTAAAATATGAGGTTGCTGTAG  300
            ||||| || |    |||||| |||||||||||||||||||||||||||||||| ||||||
Sbjct  344  GGTGG-GG-G----ATGTGGTGGTGGTGGTGGAGGCGGTTAAAATATGAGGTTTCTGTAG  397

Query  301  TTCATCAACATATAATGATCATTTCTTGTGTGTCGTATGTTTATTTGTTT  350
            ||||  | |||||||||||||||||||||||||| |||||||||||||||
Sbjct  398  TTCA--A-CATATAATGATCATTTCTTGTGTGTCATATGTTTATTTGTTT  444



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 16387286174


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5